Themed collection Most popular 2022 physical and theoretical chemistry articles

30 items
Open Access Review Article

Modeling titanium dioxide nanostructures for photocatalysis and photovoltaics

The latest findings from theoretical investigations into TiO2 nanoparticles are reviewed, including both realistic models from a bottom-up approach (1–3 nm diameter) and cut from bulk models (>3 nm diameter) in a top-down approach.

Graphical abstract: Modeling titanium dioxide nanostructures for photocatalysis and photovoltaics
Open Access Review Article

NIR TADF emitters and OLEDs: challenges, progress, and perspectives

This review presents the recent progress of NIR TADF emitters along with their molecular design strategies and photophysical properties, as well as the electroluminescence performance data of the emitters and their OLEDs.

Graphical abstract: NIR TADF emitters and OLEDs: challenges, progress, and perspectives
From the themed collection: In celebration of Chinese New Year
Open Access Edge Article

Data-driven discovery of molecular photoswitches with multioutput Gaussian processes

We present a data-driven discovery pipeline for molecular photoswitches through multitask learning with Gaussian processes. Through subsequent screening, we identify several motifs with separated and red-shifted electronic absorption bands.

Graphical abstract: Data-driven discovery of molecular photoswitches with multioutput Gaussian processes
Open Access Edge Article

Interrogating the thionium hydrogen bond as a noncovalent stereocontrolling interaction in chiral phosphate catalysis

Transferable selectivity profiles allow data from intermolecular reactions using iminium substrates to be applied to predict intramolecular reactions involving thioniums.

Graphical abstract: Interrogating the thionium hydrogen bond as a noncovalent stereocontrolling interaction in chiral phosphate catalysis
From the themed collection: 2022 ChemSci Pick of the Week Collection
Open Access Edge Article

Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase

The large conformational change of topaquinone in bacterial copper amine oxidase occurs through the TPQ ring rotation and slide, which are essential to stabilize the semiquinone form.

Graphical abstract: Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase
Open Access Edge Article

Bare and ligand protected planar hexacoordinate silicon in SiSb3M3+ (M = Ca, Sr, Ba) clusters

The global minimum of SiSb3M3+ (M = Ca, Sr, Ba) is a D3h symmetric structure containing an elusive planar hexacoordinate silicon (phSi) atom. Most importantly, the phSi core remains intact in ligand protected environment as well.

Graphical abstract: Bare and ligand protected planar hexacoordinate silicon in SiSb3M3+ (M = Ca, Sr, Ba) clusters
From the themed collection: 2022 Chemical Science HOT Article Collection
Open Access Edge Article

[Cu18H3(S-Adm)12(PPh3)4Cl2]: fusion of Platonic and Johnson solids through a Cu(0) center and its photophysical properties

An example of a butterfly-like [Cu18H3(S-Adm)12(PPh3)4Cl2] cluster with vertex-sharing kernels through a Cu(0) center. Combined experimental and theoretical results correlate its photophysical properties with its unique structural architecture.

Graphical abstract: [Cu18H3(S-Adm)12(PPh3)4Cl2]: fusion of Platonic and Johnson solids through a Cu(0) center and its photophysical properties
Open Access Edge Article

Color-tunable persistent luminescence in 1D zinc–organic halide microcrystals for single-component white light and temperature-gating optical waveguides

1D zinc–organic halide microcrystals exhibiting thermally assisted spectral separation of fluorescence and phosphorescence could be used as single-component standard white-light and temperature-gating active waveguides.

Graphical abstract: Color-tunable persistent luminescence in 1D zinc–organic halide microcrystals for single-component white light and temperature-gating optical waveguides
Open Access Edge Article

A rechargeable molecular solar thermal system below 0 °C

We demonstrate rationally designed arylazopyrazoles as MOST-PCM that can be circularly charged and discharged below 0 °C with visible light.

Graphical abstract: A rechargeable molecular solar thermal system below 0 °C
Open Access Edge Article

Predicting reaction conditions from limited data through active transfer learning

Transfer learning is combined with active learning to discover synthetic reaction conditions in a small-data regime. This strategy is tested on cross-coupling reactions from a high-throughput experimentation dataset and shows promising results.

Graphical abstract: Predicting reaction conditions from limited data through active transfer learning
Open Access Edge Article

The oxidation state in low-valent beryllium and magnesium compounds

This article examines the electronic structure of group 2 (E = Be and Mg) ligand stabilized compounds. We elaborate on the donor–acceptor interaction L(0) ⇆ E(0) ⇆ L(0) and diradical L(−1) → E(+2) ← L(−1) pictures to assess the oxidation state of the metal.

Graphical abstract: The oxidation state in low-valent beryllium and magnesium compounds
Open Access Edge Article

Why heterogeneous single-atom catalysts preferentially produce CO in the electrochemical CO2 reduction reaction

This report discloses a nontrivial role of the CO2 adsorption mode in governing the CO/formate selectivity of single-atom catalysts towards two-electron CO2 reduction.

Graphical abstract: Why heterogeneous single-atom catalysts preferentially produce CO in the electrochemical CO2 reduction reaction
From the themed collection: In celebration of Chinese New Year
Open Access Edge Article

Non-covalent reconfigurable microgel colloidosomes with a well-defined bilayer shell

Inverse W/O Pickering emulsions and reconfigurable microgelsomes with a well-defined bilayer structure are prepared from octanol-swollen PNIPAM-co-MAA microgels and the combination of binary microgels, which promise wider application of soft colloids.

Graphical abstract: Non-covalent reconfigurable microgel colloidosomes with a well-defined bilayer shell
Open Access Edge Article

Prediction and realisation of high mobility and degenerate p-type conductivity in CaCuP thin films

We synthesize air-stable, p-type CaCuP thin films with high hole concentration and high hole mobility as potential p-type transparent conductors. We study their optoelectronic properties in detail by advanced experimental and computational methods.

Graphical abstract: Prediction and realisation of high mobility and degenerate p-type conductivity in CaCuP thin films
From the themed collection: 2022 Chemical Science HOT Article Collection
Open Access Edge Article

Extending conceptual DFT to include external variables: the influence of magnetic fields

An extension of conceptual DFT to include the influence of an external magnetic field is proposed in the context of a program set up to cope with the ever increasing variability of reaction conditions and concomitant reactivity.

Graphical abstract: Extending conceptual DFT to include external variables: the influence of magnetic fields
Open Access Edge Article

Predicting biomolecule adsorption on MoS2 nanosheets with high structural fidelity

Benchmarked van der Waals density functional theory calculations are used to create a force-field to describe biomolecule interactions at the aqueous MoS2 interface, which can recover interfacial biomolecule adsorption with high structural fidelity.

Graphical abstract: Predicting biomolecule adsorption on MoS2 nanosheets with high structural fidelity
From the themed collection: 2022 ChemSci Pick of the Week Collection
Open Access Edge Article

An open source computational workflow for the discovery of autocatalytic networks in abiotic reactions

We present an open-source chemoinformatic workflow to generate and analyze complex abiological chemical networks to discover novel compounds and autocatalytic processes. We demonstrate this pipeline's capabilities against a well-studied model system.

Graphical abstract: An open source computational workflow for the discovery of autocatalytic networks in abiotic reactions
Open Access Edge Article

Data-driven discovery of cardiolipin-selective small molecules by computational active learning

We present a data-driven approach combining deep learning-enabled active learning with coarse-grained simulations and alchemical free energy calculations to discover small molecules to selectively permeate cardiolipin membranes.

Graphical abstract: Data-driven discovery of cardiolipin-selective small molecules by computational active learning
From the themed collection: 2022 ChemSci Pick of the Week Collection
Open Access Edge Article

Mining anion–aromatic interactions in the Protein Data Bank

The comprehensive analysis of non-redundant PDB macromolecular structures investigating anion distributions around all aromatic molecules in available biosystems is presented.

Graphical abstract: Mining anion–aromatic interactions in the Protein Data Bank
From the themed collection: Emerging Frontiers in Aromaticity
Open Access Edge Article

Model agnostic generation of counterfactual explanations for molecules

Generating model agnostic molecular counterfactual explanations to explain model predictions.

Graphical abstract: Model agnostic generation of counterfactual explanations for molecules
From the themed collection: 2022 Chemical Science HOT Article Collection
Open Access Edge Article

Computationally driven discovery of SARS-CoV-2 Mpro inhibitors: from design to experimental validation

The dominant binding mode of the QUB-00006-Int-07 main protease inhibitor during absolute binding free energy simulations.

Graphical abstract: Computationally driven discovery of SARS-CoV-2 Mpro inhibitors: from design to experimental validation
Open Access Edge Article

PIGNet: a physics-informed deep learning model toward generalized drug–target interaction predictions

PIGNet, a deep neural network-based drug–target interaction model guided by physics and extensive data augmentation, shows significantly improved generalization ability and model performance.

Graphical abstract: PIGNet: a physics-informed deep learning model toward generalized drug–target interaction predictions
From the themed collection: 2022 ChemSci Pick of the Week Collection
Open Access Edge Article

A reactivity model for oxidative addition to palladium enables quantitative predictions for catalytic cross-coupling reactions

We report a quantitative model for oxidative addition reactivity in palladium-catalyzed cross-coupling, which is broadly applicable to predict reactivity and selectivity for complex substrates from simple molecular descriptors.

Graphical abstract: A reactivity model for oxidative addition to palladium enables quantitative predictions for catalytic cross-coupling reactions
Open Access Edge Article

Synaptotagmin-1 C2B domains cooperatively stabilize the fusion stalk via a master-servant mechanism

Synaptotagmin-1 is a low-affinity Ca2+ sensor that triggers synchronous vesicle fusion.

Graphical abstract: Synaptotagmin-1 C2B domains cooperatively stabilize the fusion stalk via a master-servant mechanism
Open Access Edge Article

Generating 3D molecules conditional on receptor binding sites with deep generative models

We generate 3D molecules conditioned on receptor binding sites by training a deep generative model on protein–ligand complexes. Our model uses the conditional receptor information to make chemically relevant changes to the generated molecules.

Graphical abstract: Generating 3D molecules conditional on receptor binding sites with deep generative models
Open Access Edge Article

Photosensitization mechanisms at the air–water interface of aqueous aerosols

First-principles molecular dynamics simulations of imidazole-2-carboxaldehyde at the air–water interface highlight the role of surfactants in stabilising the reactive triplet state involved in photosensitisation reactions in aqueous aerosols.

Graphical abstract: Photosensitization mechanisms at the air–water interface of aqueous aerosols
Open Access Edge Article

Equilibria between conformational states of the Ras oncogene protein revealed by high pressure crystallography

The equilibria between structural states induced by pressure within the crystal structure of Ras are illustrated with different colors corresponding to different Ras substates.

Graphical abstract: Equilibria between conformational states of the Ras oncogene protein revealed by high pressure crystallography
Open Access Edge Article

Low-energy electron distributions from the photoionization of liquid water: a sensitive test of electron mean free paths

Our study reveals the detailed influence of elastic and inelastic mean-free paths on the complete photoelectron spectra of liquid water, including the low-energy electron distributions and the reshaping of the primary photoelectron bands.

Graphical abstract: Low-energy electron distributions from the photoionization of liquid water: a sensitive test of electron mean free paths
Open Access Edge Article

Improving machine learning performance on small chemical reaction data with unsupervised contrastive pretraining

Contrastive pretraining of chemical reactions by matching augmented reaction representations to improve machine learning performance on small reaction datasets.

Graphical abstract: Improving machine learning performance on small chemical reaction data with unsupervised contrastive pretraining
Open Access Edge Article

MGraphDTA: deep multiscale graph neural network for explainable drug–target binding affinity prediction

MGraphDTA is designed to capture the local and global structure of a compound simultaneously for drug–target affinity prediction and can provide explanations that are consistent with pharmacologists.

Graphical abstract: MGraphDTA: deep multiscale graph neural network for explainable drug–target binding affinity prediction
30 items

About this collection

This specially curated collection pulls together some of the most popular articles from 2022 in the field of physical and theoretical chemistry. The collection presents some outstanding contributions to the field, ranging from deep learning models for predicting drug-target interactions, through to investigations into colour-tunable persistent luminescence in low-dimensional zinc-organic halide microcrystals. As with all Chemical Science articles, they are all completely free to access and read. We hope you enjoy browsing through this collection.

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