Open Access Article
Lucía Palomino-Ruiz
*ab,
Juan P. Mora-Fuentes†
a,
Silvia Castro-Fernandeza,
Irene R. Márquez
ac,
Juan M. Cuerva
a,
José Catalán-Toledod,
Marta Mas-Torrent
d,
Núria Crivillers
d,
Edmund Leary
b,
Alba Millán
a,
Linda A. Zotti
*efg,
M. Teresa González
*b and
Araceli G. Campaña
*a
aDepartamento de Química Orgánica, Facultad de Ciencias, Unidad de Excelencia de Quıímica Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada, 18071 Granada, Spain. E-mail: lucia.palomino@imdea.org; araceligc@ugr.es
bFundación IMDEA Nanociencia, 28049 Madrid, Spain. E-mail: teresa.gonzalez@imdea.org
cCentro de Instrumentación Científica, Universidad de Granada, 18071 Granada, Spain
dInstitut de Ciència de Materials de Barcelona (ICMAB, CSIC), Campus de la UAB s/n, Bellaterra 08193, Spain
eDepartamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, 28049 Madrid, Spain. E-mail: linda.zotti@uam.es
fCondensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
gInstituto Nicolás Cabrera (INC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
First published on 19th December 2025
Pristine graphene exhibits unique physical and chemical properties. However, during its fabrication different imperfections are inevitably formed, which can induce changes to the properties of the material. Bottom-up methologies make it possible to synthesise graphene nanostructures incorporating selected defects in different positions. These graphene-like molecules of reduced size are being increasingly used, first as simple models to investigate the impact of different kind of structural defects, and secondly for achieving structures with selected properties for specific purposes. Some of these defects are able to induce curvature in the structure, but their impact on electron transport has scarcely been investigated. We report the first electron-transport study through saddle-shaped nanographenes, including experimental and theoretical perspectives. For the studied systems, we demonstrate that the inclusion of this kind of curvature by means of a tropone ring at the edge of the structure has no significant effect in terms of both single-molecule and self-assembled monolayer conductance, while enhancing solubility and processability considerably when compared to the defect-free analogues. These results aim at finding useful correlations between out-of-plane distortion on nanographenes and the electron transport through them, in view of the increasing interest in processable carbon nanostructures as potential candidates for the next generation of electronic technologies.
Nanographenes (NGs) and other extended polycyclic conjugated hydrocarbons (PCHs) are highly attractive compounds for electronic and optoelectronic applications since their properties can be tuned depending on their size, shape, topology and other structural characteristics.6–8 Some of them have been successfully incorporated into high-performance opto-electronic devices, pointing to promising applications such as organic field-effect transistors9,10 and phototransistors for data storage devices.11 NGs also serve as excellent models for investigating the properties of graphene at a reduced scale, with the advantage of offering a well-defined energy gap. Remarkably, their electronic properties at the single-molecule level have been scarcely explored to date. Previous experimental studies are mainly limited to relatively small PCHs (Fig. 1, top) such as pyrene,12 anthanthrene,13 perylene dimides (PDIs)14 and other N-doped analogues,15 together with some NGs such as hexa-peri-hexabenzocoronene (HBC) derivatives16 or oligomers,17 and molecular bilayer-graphene.18 In particular, curved PCHs, presenting a conjugated sp2 surface out of the plane, remain almost unexplored in the field, even when it has been probed to present different optical and redox properties when compared to planar systems of similar size.19 In this sense, the curvature can be induced by the presence of non-hexagonal rings in the structure. Depending on the number of C atoms (n) in these non-hexagonal rings, different types of curvature can be observed. Rings with n = 3–5 generate bowl-shaped (positively-curved) structures, while rings with n = 7–16 lead to saddle-shaped (negatively curved) structures.20 In contrast, some particular combination of 5- and 7-membered rings are able to cancel the curvature, maintaining planar structures.21 The electron-transport through positively curved corannulene junctions has only been theoretically studied, finding a higher conductance for alkyne-terminated molecules than for other saturated linkers.22 Promising spin filter behavior was also predicted for organometallic single-molecule junctions using corannulenes as ligands.23 Concerning electron-transport through saddle-shaped PCHs, it remains completely unexplored from both experimental and theoretical points of view. The lack of information about the electronic properties of curved NGs makes it difficult to draw consistent assumptions, not only about the impact of curvature on the electron transport properties with respect to defect-free planar structures, but also to predict if these two types of curvature affect differently. This current gap is also surprising, considering curved NGs offer appealing options for organic electronic materials, given their enhanced solubility and processability. In particular, saddle-shaped structures display certain conformational flexibility, in contrast with the rigidity of the bowl-shaped structures, and have potential for novel self-assemblies, different from those occurring in planar counterparts.
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| Fig. 1 Top: structures of selected well-defined planar12,13,16 (left) or bowl-shaped22 (right) PCHs in which electron transport have been studied (L: represents linkers for electrode anchoring). Bottom: structures of saddle-shaped NGs (left) and planar NGs (right) studied in this work and its representation between gold electrodes (in yellow). | ||
In this context, we aim to examine the interplay between defective curved structures and electron transport properties in NGs, thereby providing a deeper understanding of their potential applications in future technologies. Here we report on the electron-transport properties of saddle-shaped NGs (Fig. 1, bottom), in comparison with the corresponding planar pristine analogues. Moreover, we also evaluate the effect of two different anchoring groups. After the stepwise synthesis and full characterization of the target molecules, we experimentally determine that the conductance values of the selected NGs are unaffected by the curvature. We first studied their single-molecule conductance by means of scanning tunneling microscopy break-junction (STM-BJ) technique, which has been extensively used for characterizing electron-transport properties at the single molecule level.24 These transport measurements are compared with the ones obtained in large molecular junctions using the technique based on the liquid metal eutectic gallium indium alloy (EGaIn) as soft top contact electrode on NGs monolayers.25 Calculations based on density functional theory (DFT) were performed for evaluating the theoretical conductance values of the molecules, resulting in a better comprehension of the transport phenomena through these systems.
In our study, we have selected two different anchoring groups, which have been included in equivalent positions in both curved and planar analogues. One of the main purposes of the anchoring groups is to create an efficient electronic coupling with the electrodes. Although some previous studies on graphene-related molecules have been conducted without adding anchoring groups,28–30 they are key for ensuring reproducible and well-defined molecule-electrode contacts. The nature of the linker also plays a fundamental role in the transport, being responsible for changes in conductance of even orders of magnitude for a given molecular backbone. In particular, we have used (i) thiomethyl groups (–SMe),31–34 linked to the HBC cores through a ethynylbenzene as spacer, and (ii) alkynes (–alk),35–39 directly bonded to the core. These groups are strategically located on opposite edges of the HBC core to force the electronic current to cross the π-system from one side to the other. The linkers were introduced by Sonogashira coupling from the dibromo (diBr) functionalized HBC/7-HBC cores, using the corresponding alkyne derivative in each case. Planar diBr-HBC was synthesized using a well-established protocol,40 based on Diels–Alder reaction of diphenylacetylenes with tetraphenylcyclopentadienones, and followed by oxidative cyclodehydrogenation. In the case of the curved diBr-7-HBC, its synthesis was also previously reported41 by a sequence of alkyne cyclotrimerization reactions of adequate precursors, followed by oxidative cyclodehydrogenation.27 The experimental details and structural characterization of the compounds can be found in the SI, section S1.
000–13
000 traces per measurement round. The results obtained for the two pairs of curved and planar molecules with the same anchoring group (7-HBC-SMe/HBC-SMe pair and 7-HBC-alk/HBC-alk pair) are analyzed independently in the following sections.
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| Fig. 3 2D histograms of log(G/G0) vs. V, built from the −1.5 to +1.5 V ramps along the molecular plateaus for 7-HBC-SMe (a) and HBC-SMe (b). | ||
For further insight, we performed computational simulations based on DFT (see details in the SI, section S3). The gas-phase optimized geometry of 7-HBC-SMe shows an angle of approximately 18° between the planes of two consecutive rings along the backbone axis and 10° in the perpendicular direction. Overall, this gives rise to a total depth of the conjugated core and the whole compound of 1.8 Å and 6.6 Å, respectively, along the longitudinal direction. The gas-phase calculations revealed a very similar spatial distribution of the HOMO in HBC-SMe and 7-HBC-SMe, apart from additional weight on the oxygen in the latter (see Fig. S10). There is also a very close energy alignment of the frontier orbitals of the two compounds (the HOMO (LUMO) of 7-HBC-SMe being only 0.11 eV (0.18 eV) lower than for HBC-SMe). This might be surprising at first, since one would expect the bending in the curved structure to raise both HOMO and LUMO.44 This would be a consequence of the symmetry breaking of the π system between the regions above and below the molecular plane, which in turn breaks the conjugation uniformity, slightly destabilizing the system.
Previous calculations in the literature focused on bending compounds rather than comparing compounds where curvature has been created by chemical manipulation. In particular, in PCHs, bending is known to shift the frontier orbitals in different ways. For example, in the case of bent acenes, both HOMO and LUMO shift to higher energies,44 while for PDIs,45,46 the HOMO energy increases while the LUMO energy decreases upon bending. For pyrenacenes, however, the opposite with respect to PDIs is predicted,47 due to a bonding interaction arising between the orbital lobes as they approach each other upon bending. Following the same reasoning about the HOMO lobes for 7-HBC-SMe (Fig. S10), an antibonding interaction would be expected, since the curvature of the structure enhances the interaction between certain lobes of opposite phases along the transport direction. The system would thus destabilize and, in turn, raise the HOMO energy with respect to that of HBC-SMe. That said, several factors will counteract this effect, considering that the negative curvature in our system requires structural modification of the pristine planar analogue, rather than a simple bending. Firstly, the presence of the electron-withdrawing carbonyl group is expected to pull the levels down.48,49 Secondly, this group breaks direct conjugation between two adjacent phenyl rings, which would tend to widen the HOMO–LUMO gap. This is evidenced by the energetics resulting from replacing the CO group with a CH2 group, which can be regarded as the minimal chemical modification (Table S3 and Fig. S17 in section S3.3.3. of the SI).
In Fig. 2c, we report the transmission curves computed for metal–molecule–metal junctions based on the two compounds. Since the –SMe group prefers binding to undercoordinated gold atoms,50 the molecules were placed in ideal top-binding positions (Fig. 2d and e). The computed curves were obtained via a combination of DFT and Green's function techniques51,52 (see section S3 of the SI for further details on the methodology and additional computational analyses of the systems). We observe that, in both cases, the transport takes place through the tail of the HOMO, the energetic position of which reflects the same trend found in the gas phase, albeit with a slightly larger shift between the two compounds (by 0.1 eV, probably due to structural re-adjustment taking place in the geometry optimization). The transmission values are very similar for energies in the range ±0.5 eV around the Fermi level. This is partially due to the proximity of the two HOMO resonances with respect to each other, and partially to the equal energetic distance between HOMO and LUMO resonances. This results in the two transmission curves crossing near the Fermi level. Thus, the molecular conductance (given, to a good approximation, by the transmission at this energy) is found to be very similar (1.6 × 10−5 G0 and 1.1 × 10−5 G0 for 7-HBC-SMe and HBC-SMe, respectively). Such behavior is consistent with the experimental results discussed above, which showed similar conductance for the two compounds. The similarity in the 7-HBC-SMe/HBC-SMe pair is also consistent with predictions obtained by tight-binding (TB) approaches (SI, section S3.2).
In order to investigate the effect of the lateral π-extension and conjugation in the electron transport, we synthetized the heptagon-containing hexaphenylbenzene (HPB) analogue 7-HPB-SMe (see SI, Scheme S4). This compound has a similar size but is less conjugated than 7-HBC-SMe, as the additional C–C bonds responsible for creating the HBC core are missing. The results of the STM-BJ experiments for this molecule are available in Fig. S4. The 2D histogram (Fig. S4a) reveals a single well-defined conductance signal that starts below −6 log(G/G0) and extends beyond the limits of the experimental detection window, with a mean conductance of about 1.5 orders of magnitude lower than that of 7-HBC-SMe. No signals compatible with through-space conjugation were observed in this case, as has been previously reported for other HPB-based molecules.53 The plateau length distributions concur at the same values for both molecules (Fig. S4b), in agreement with their almost identical expected linker-to-linker distances (see Table S1). The experimental conductance decrease observed for 7-HPB-SMe with respect to 7-HBC-SMe, agrees with the computed transmission curves (Fig. S15d). A closer inspection of the optimized junction geometries (Fig. 2d and Fig. S15a) allows us to relate this conductance change with the different dihedral angles in the central moiety, going from 63° in the 7-HPB-SMe to near zero in 7-HBC-SMe (see section S3.3.1. of the SI for further discussion). These results show that the lateral extension of conjugation is a good strategy for increasing the conductance while maintaining the length, as long as it is associated with limiting the torsion angles along the conduction pathway.
2D and 1D histograms built from the G–z traces showing plateaus for 7-HBC-alk and HBC-alk are available in Fig. 4a and b (950 G–z traces, 7% success rate, and 844 G–z traces, 4% success rate, respectively), and display a very different molecular signal than that obtained for the –SMe terminated pair. The histograms reveal a multi-peak molecular signal that expands for more than 3 orders of magnitude. Multi-peak signals are normally an indication of various processes occurring in the junction while stretching the electrodes. This kind of profile, typically observed for compounds with terminal alkyne groups,35–39 can be difficult to interpret without further data analysis. For a deeper understanding of this behavior, a clustering-based analysis was applied to the data, indicated in Fig. 4a and b with a black arrow. In this analysis, we could distinguish three groups (A, B and C) within the G–z traces with plateaus for 7-HBC-alk and HBC-alk.
Clearly, the observations in terms of histogram profiles, conductance values and plateau lengths for the three groups for 7-HBC-alk and HBC-alk are very similar. This result confirms that inducing curvature in the system by the applied structural changes is not translated into a loss of electron transport potential at the single-molecule level, regardless of the selected anchoring group and, therefore, independently of the coupling strength with the electrodes.
For both compounds, groups A and B display flat plateaus followed by a bulged conductance fall. This drastic change in the trace profile is an indication of a transition between different processes during the breakdown of the junction. The length distributions until the end of the flat region and until the end of the bulged tail suggest that the former corresponds to the formation of a stable molecular junction, while the latter is due to rearrangements of the gold prior to the junction breakage, in agreement with previous theoretical54 and experimental35 work with ethynyl-terminated molecules. The conductance values for this flatter region are slightly higher in group A (log(G/G0) = −3) than in group B (log(G/G0) = −3.5), suggesting that they are generated by two slightly different stable junctions. The most plausible hypothesis relates them with the different ways of bonding that have been reported for Au and acetylene groups, involving not only σ/σ interactions, but also σ/π and π/π.55 The third group (C), is formed by sloping traces, going towards lower conductance values.
The transmission curves obtained by DFT (Fig. 4c), as well as TB calculation (Fig. S13), support once more the experimental similarities between the flat and curved compounds. In addition, they predict higher conductance for the ethynyl-terminated compounds with respect to the longer ethynylbenzene-SMe counterparts, in agreement with the general experimental trend. The difference between the theoretical values for the two types of binding is approximately one order of magnitude, in agreement with the difference in length, although slightly lower than observed experimentally. The large experimental distribution in conductance suggests that more geometrical configurations other than those shown in Fig. 4d and e are at play. For instance, it was reported that terminal alkynes prefer to bind to gold in bridge positions.36,55 In addition, binding geometries involving the aforementioned σ/π and π/π interaction at the metal–molecule interface may also be formed. Considering the relative theoretical difference between –SMe and alkyne groups implies that the geometries analysed in Fig. 4d and e fit in the lower tail of the experimental distribution. Conversely, the transmission curves computed for the alkyne family in the bridge binding position (Fig. S16) show higher conductance values than in the top configuration and could thus correspond to the higher-conductance experimental plateaus. Remarkably, placing the flat and curved compounds in identical binding geometries results, again, in similar conductance values. That said, a precise assignment of experimental conductance groups to specific binding geometries would require an extensive computational study covering a much larger variety of structures at different stretching stages. This goes well beyond the bounds of this work. A more detailed analysis and further discussion about the three conductance groups can be found in the SI.
Subsequently, charge transport measurements were performed using the liquid metal EGaIn as top electrode, giving EGaIn/GaOx/SAMs/AuTS large area junctions. The EGaIn metal can be shaped as a tip to soft-contact organic layer and it has been previously employed to measure the transport through a wide variety of molecular monolayers,57,58 including SAMs composed of conjugated molecules.25 As shown in Fig. S19, similar log|J| values were measured for each pair of SAMs, indicating that the curvature does not affect the measured current density values, which is in agreement with the results described above for single-molecule junctions. It is therefore shown again that this kind of structural defects does not affect the electron-transport in graphene-like molecules, while being beneficial for processability, adsorption or electrochemical properties.
Supplementary Information (SI): synthesis and full characterisation of compounds; experimental details of STM-BJ and EGaIn techniques and further measurements; further details on DFT and TB calculations. See DOI: https://doi.org/10.1039/d5nr04033g.
Footnote |
| † Present address: Departamento de Química Orgánica, Centro Singular de Investigación de Química Biológica y Materiales Moleculares, Universidad de Santiago de Compostela, 18071 Santiago de Compostela, Spain. |
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