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Issue 14, 2019
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Single-cell RT-LAMP mRNA detection by integrated droplet sorting and merging

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Abstract

Recent advances in transcriptomic analysis at single-cell resolution reveal cell-to-cell heterogeneity in a biological sample with unprecedented resolution. Partitioning single cells in individual micro-droplets and harvesting each cell's mRNA molecules for next-generation sequencing has proven to be an effective method for profiling transcriptomes from a large number of cells at high throughput. However, the assays to recover the full transcriptomes are time-consuming in sample preparation and require expensive reagents and sequencing cost. Many biomedical applications, such as pathogen detection, prefer highly sensitive, reliable and low-cost detection of selected genes. Here, we present a droplet-based microfluidic platform that permits seamless on-chip droplet sorting and merging, which enables completing multi-step reaction assays within a short time. By sequentially adding lysis buffers and reactant mixtures to micro-droplet reactors, we developed a novel workflow of single-cell reverse transcription loop-mediated-isothermal amplification (scRT-LAMP) to quantify specific mRNA expression levels in different cell types within one hour. Including single cell encapsulation, sorting, lysing, reactant addition, and quantitative mRNA detection, the fully on-chip workflow provides a rapid, robust, and high-throughput experimental approach for a wide variety of biomedical studies.

Graphical abstract: Single-cell RT-LAMP mRNA detection by integrated droplet sorting and merging

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Publication details

The article was received on 15 Feb 2019, accepted on 06 Jun 2019 and first published on 08 Jun 2019


Article type: Paper
DOI: 10.1039/C9LC00161A
Lab Chip, 2019,19, 2425-2434

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    Single-cell RT-LAMP mRNA detection by integrated droplet sorting and merging

    M. T. Chung, K. Kurabayashi and D. Cai, Lab Chip, 2019, 19, 2425
    DOI: 10.1039/C9LC00161A

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