Open Access Article
Ambili
Ramanthrikkovil Variyam
a,
Mateusz
Rzycki
b,
Ramesh
Nandi
a,
Alexei A.
Stuchebrukhov
c,
Dominik
Drabik
b and
Nadav
Amdursky
*ad
aSchulich Faculty of Chemistry, Technion – Israel Institute of Technology, Haifa, 3200003, Israel. E-mail: amdursky@technion.ac.il
bDepartment of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, 50-370, Poland
cDepartment of Chemistry, University of California at Davis, One Shields Avenue, Davis, California 95616, USA
dChemistry, School of Mathematical and Physical Sciences, University of Sheffield, Sheffield S3 7HF, UK. E-mail: n.amdursky@sheffield.ac.uk
First published on 17th February 2025
Biological membranes play a major role in diffusing protons on their surfaces between transmembrane protein complexes. The retention of protons on the membrane's surface is commonly described by a membrane-associated proton barrier that determines the efficiency of protons escaping from surface to bulk, which correlates with the proton diffusion (PD) dimensionality at the membrane's surface. Here, we explore the role of the membrane's biophysical properties and its ability to accept a proton from a light-triggered proton donor situated on the membrane's surface and to support PD around the probe. By changing lipid composition and temperature, while going through the melting point of the membrane, we directly investigate the role of the membrane phase in PD. We show that the proton transfer process from the proton donor to the membrane is more efficient in the liquid phase of the membrane than in the gel phase, with very low calculated activation energies that are also dependent on the lipid composition of the membrane. We further show that the liquid phase of the membrane allows higher dimensionalities (close to 3) of PD around the probe, indicating lower membrane proton barriers. In the gel phase, we show that the dimensionality of PD is lower, in some cases reaching values closer to 1, thus implying specific pathways for PD, which results in a higher proton recombination rate with the membrane-tethered probe. Computational simulations indicate that the change in PD between the two phases can be correlated to the membrane's ‘stiffness’ and ‘looseness’ at each phase.
While the proton barrier can result in a delayed equilibrium between protons on the surface of the membrane and bulk protons and can explain the observed lateral long-range PD on the surface of the membrane, lateral long-range PD and the mechanism behind the proton barrier are not well understood. Also, the nature of the delayed equilibrium process is mysterious; while some suggest a quasi-equilibrium model between protons on the surface and bulk,19–21i.e., fast desorption and adsorption of protons from the surface to the bulk, others suggest a non-equilibrium model,12,16,22i.e., the retention of the protons on the surface of the membrane. While the initial studies targeting the membrane-related proton barrier proved the capability of biological membranes to support lateral PD,3–5,23 more recent studies targeted the role of the membrane composition in this process.15–18,24–27 A fundamental biophysical property of the membrane that was commonly overlooked in most studies concerning PD on the surface of biological membranes is the membrane phase, liquid (fluid) vs. gel (solid) phase. In general, the phase transition of biological membranes is a complicated process involving various intermediate stages of lipid ordering as the membrane transitions between its two phases.28 Traditionally, and even though it is not a first-order process, the phase transition is characterized by a transition melting temperature (Tm), commonly determined by calorimetry/thermal techniques.29,30 This transition signifies a global alteration in the membrane's fluidity. As the temperature increases beyond the Tm, a greater portion of the membrane exists in its liquid phase. Conversely, as the temperature decreases below the Tm, a larger portion of the membrane resides in its gel (ordered) phase. In this study, we directly tackle the role of the membrane phase, which is also related to the membrane composition, on the ability of the membrane to support PD and the nature of the proton barrier. By changing the composition of the membrane and performing temperature-dependent measurements going through the Tm, we can resolve the changes in the PD and other PT processes happening on the surface of the membrane and decipher the mechanism of PT.
To measure the PT reactions on the surface of the biological membrane, we use here our recently developed probe that can be tethered to the surface of the membrane and can release, i.e., inject, a proton to the surface of the membrane on demand following light excitation.15,31 The probe is based on the pyranine photoacid to which long alkyl chains were attached, a probe that we term C12-HPTS (Fig. 1). Following excitation and owing to the low pKa value in the excited state of the probe, it undergoes a deprotonation process known as excited-state PT (ESPT):
![]() | (1) |
:
PA, but now we use the DMPC and DMPA (DM = 1,2-dimyristoyl, i.e., 14
:
0 PC or PA). Unlike the POPC
:
POPA system, where all the different membrane compositions have their Tm below room temperature (RT), i.e., they are all in their liquid phase at RT, the DMPC
:
DMPA system has a large accessible range of Tm values between 24 °C (for DMPC) and 52 °C (for DMPA), hence, allowing us to follow the PT processes at different phases (Fig. 1 for the molecular structure of DMPC and DMPA, the ratios used in this study, and the Tm values of each membrane). Furthermore, while comparing the DM system to the PO system, we can compare the PT properties of a membrane with the same headgroup but at different phases at a given temperature. Importantly, in both DM and PO systems, the PC and PA lipids create a homogenous distribution of lipids without a clear indication of phase separation or domain formation.32
In terms of the size of the vesicles used, all the different SUVs used in this study were of a similar size with a diameter of ∼100 nm, as estimated using dynamic light scattering (DLS) (Fig. S1†). The density of the inserted probe (1% vs. lipids) is such that the averaged distance between the probes is of the order of 7 nm, which is the same order of magnitude to the distance of protein proton channels/pumps within membranes. Another important system criterion is that the C12-HPTS probe should be protonated (in its ground state) at the pH value of the solution used to allow the ESPT process in the excited-state. To verify it, we performed pH titration and followed the UV-vis absorption of the probe in each membrane composition used here (Fig. S2 and Table S1† for the calculated apparent ground state pKa values of the probe in the membranes).
![]() | (2) |
At this stage, we can already see a general trend where below the melting point, when the membrane is in its gel phase, the change in the RO−*/ROH* as a function of temperature is modest compared to the change in the ratio above the Tm when the membrane is in its liquid phase (the insets of Fig. 2). However, from the steady-state fluorescence measurements alone, we cannot extract the needed PT rates to understand the PD process (as both the kPT and kPT−1 rates are unknown and temperature-dependent), which leads us to the time-resolved measurements.
. The first process is the ESPT process, the deprotonation of the excited probe, which is a fast process on the dozens to hundreds of picoseconds. This process reflects how good the surface of the membrane is in accepting the proton from the excited probe. A poor proton acceptor will result in a slow ESPT process, as we showed previously for cationic membranes,15 whereas a good proton acceptor will result in a fast ESPT, as we showed for anionic (POPA) membranes. Following the fast initial ESPT, there are two competing processes: the reverse proton recombination process (with RO−*) for reforming ROH* and the PD process, resulting in the escape of protons from RO−*.
Fig. 3 shows the time-resolved decay of ROH* for the DMPC and DMPA membranes and the different ratios between them used in this study (Fig. S4† for the graphs for POPC and POPA), measured at different temperatures (from 10° to 70 °C). Already in this stage, it is evident that the change in temperature changes both the initial fast process and the subsequent slow decay tail.
The fast initial ESPT process can be decoupled from the PD parameters of the accepting medium and the subsequent proton geminate recombination process, whereas the depletion in the excited ROH population (pROH*(t)) at very early times (dozens to hundreds of picoseconds) can be expressed as:25
![]() | (3) |
![]() | (4) |
Accordingly, we can use our time-resolved measurements of all the different membranes used in this study at different temperatures (from 10° to 70 °C) to extract kPT from the first ∼100 ps of the decay, and d from later (>2 ns) in the decay (Fig. S5 and Table S3†). The time-resolved measurements at the position of RO−* (Fig. S6†) can be used to calculate its krx at the different membrane models and temperatures. By knowing, kPT, krx, and RO−*/ROH*, we can extract the recombination rate kPT−1 using eqn (2) (Table S4†). It should be noted that in line with our previous study showing an anomalous change in kPT and kPT−1 as a function of the %POPA in POPC vesicles at RT,26 we also observe the same anomaly for the DMPC
:
DMPA system at both the high-temperature liquid phase and the low-temperature gel phase (Fig. S7†). As discussed in our previous study,26 this non-monotonic change in ESPT parameters occurring at low PA concentrations within PC membranes can be attributed to changes in the membrane's structure at these low concentrations of PA (such as the presence of defects) while considering a regular distribution of lipids in the system. Nonetheless, our focus here is the change in the PT and PD properties as a function of temperature for different phases of a given membrane.
![]() | ||
Fig. 4 The extracted kPT values (top panels, green dots) from the initial decay and the extracted dimensionality (d) values (bottom panels, right axis, blue dots) from the slow tail of the decay of ROH* (see fitting in Fig. S5†), together with the extracted kPT−1 values (bottom panels, left axis, red dots) using eqn (2) for membranes composed of (a) DMPC, DMPC : DMPA ratios of (b) 9 : 1, (c) 3 : 1, (d) 1 : 1, (e) 1 : 3, and (f) DMPA. The insets of the top panels are the same data plotted in an Arrhenius type (ln(kPT) vs. 1000/T) together with the calculated activation energy at each membrane phase. | ||
:
1 for DMPC
:
DMPA), the Ea calculated for the gel phase is higher than the one calculated for the liquid phase. However, in DMPA membranes and the ratio of up to 1
:
3 of DMPC
:
DMPA, the Ea calculated for the liquid phase was higher than that calculated for the gel phase. The latter trend was also observed for POPA membranes, having an accessible Tm value (28 °C) (Fig. S8† comparing DMPA to POPA), hence highlighting the role of the headgroup in this observation. This finding is surprising since, as stated, the Ea is expected to increase with decreasing temperatures. Interestingly, the liquid phase of PC-rich membranes and the gel phase of PA-rich membranes both result in a very low Ea of the PT process in the order of only 11–14 meV. This small value indicates almost activation-less proton dissociation from the excited state, given kBT at room temperature of 25 meV. It should be noted that all the extracted Ea values here are on the lower end of what was observed with the pyranine photoacid in solution,36 which highlights the different environment of the membrane surface for accepting a proton compared to the bulk medium.
The magnitude of the proton dissociation rate kPT ∼1010 s−1 that we obtain together with the magnitude of activation energy (enthalpy), Ea ∼10 meV, can be used by the transition state theory, kPT = 1013
exp(−ΔG/RT), to calculate the activation entropy part (TΔS) of ΔG, which comes out to be around −180 meV. The latter estimate can be interpreted in terms of the fraction of thermal configuration states of the probe within the membrane with strong hydrogen bonds that lead to proton release,
. Such hydrogen bonds are transient, and the obtained number is a statistical fraction of total configurations that result in the reaction.
Moreover, if we assume that the recombination occurs with the typical bimolecular rate of 1011 M−1 s−1, the concentration corresponding to the geminate proton around the probe can be evaluated from the relation kPT−1 = 1011[H+]g. For a rate in the magnitude of kPT−1 ∼109 s−1, we find that the geminate proton concentration is [H+]g = 10−2 M, i.e. the effective geminate is at pH = 2, i.e. much lower than the pH of biological system. Interestingly, this geminate concentration corresponds to one proton per ∼100 nm−3, which means the geminate proton explores the region of some 4–5 nm around the probe before recombining with the probe. This distance is also in the same order of the calculated distance between the probes on the surface of the membrane.
As for the change in the calculated kPT−1 values, we observed a gradual decrease in kPT−1 as a function of temperature, without a major indication of a different rate of change between the liquid and gel phases of the membrane. This means that the recombination of the proton coming from the membrane with RO−* is more efficient at low temperatures, which is in contrast to the discussed kPT. Moreover, the change in the magnitude of kPT−1 is also larger than the discussed change in kPT, whereas for the DMPC/DMPA system and the different ratios of them, the change in kPT−1 is several folds going from 10° to 70 °C. Interestingly, the change in kPT−1 as a function of temperature is lower for the PO systems than the DM ones, and especially while comparing POPC and DMPC (Fig. S10†). What does it all mean? Unlike kPT, which is not associated with the subsequent PD happening after proton dissociation, kPT−1 is highly related to the PD parameters of the dissociated proton. If the dissociated proton can rapidly diffuse away from RO−*, it will result in low kPT−1 values, and vice versa. Accordingly, the high kPT−1 calculated for the low temperatures is indicative of the poor escape of protons at such temperatures, which is reasonable. The magnitude of the change in kPT−1 as a function of temperature is then directly related to the capability of the membrane to enable lateral PD from the probe or the escape of protons from the membrane surface to bulk. We can define two important parameters in this context: the proton diffusion coefficient of the process and its dimensionality. Unlike previous models,35 our model for the ESPT process does not estimate the proton diffusion coefficient of the dissociated proton. However, as discussed, we can directly estimate the dimensionality of PD from the long-time component of the decay.
:
DMPC ratios falls between 2 and 3, whereas the higher the PA fraction, the closer it is to 2. The next important observation is that the extracted d values change as a function of temperature, whereas the lower the temperature, the lower the d value. Moreover, the magnitude of the change of d values as a function of temperature is generally smaller at the liquid phase of the membrane (at high temperatures) compared to a larger change in the gel phase (at low temperatures). For DMPC, the d values go down to 2.4 at 10 °C. However, upon adding PA, and regardless of the amount of PA (even at the small DMPC
:
DMPA ratio of 9
:
1), the calculated dimensionality is significantly reduced, reaching values of ≤1.5 at the low-temperature gel phase of such membranes. Such low dimensionality values suggest a further restriction of the PD process from lateral dimensionality to lower ones, such as the previously discussed pathways/wires for protons on the surface of membranes,12,38 and an increase in the proton barrier of the membrane.
To summarize this part of the discussion, our temperature-dependence studies of the different membranes reveal a clear distinction between the capability of membranes to accept a proton and support PD in their liquid vs. gel phase, which is also dependent on their composition. The activation energy for the PT process from the probe to the surface is generally low (<40 meV), whereas in membranes with high PC content, the Ea is higher in the gel phase, and in membranes with high PA content, the Ea is higher in the liquid phase. Following dissociation, the recombination rate of the proton with the deprotonated probe decreases as a function of increasing temperature due to the escape and diffusion of protons from the probe. The PD dimensionality is also temperature-dependent, showing larger values in the liquid phase than in the gel phase. We also observed that having PA in the membrane results in a lower dimensionality (<2) at the gel phases of such membranes.
:
DMPA ratios used here and at different temperatures covering the two sides of the Tm: membrane thickness, area per lipid, lipid diffusion, and membrane bending (Fig. 5).
The first notable observation from Fig. 5 is that all the biophysical properties simulated are experiencing a sharp change in their values around the Tm of the membrane composition, which also corresponds to what we found with the kPT values (Fig. 4). According to our calculations, the membranes in their gel phase have a lower area per lipid, slower lipid diffusion, they are thicker, and with a higher bending energy than the membranes in their liquid phase. Hence, the efficient kPT values we observed in the liquid phase are associated with a ‘looseness’ structure of the membrane (high area per lipid, fast diffusion of lipids, low thickness, and low bending energy). This membrane configuration also allows higher dimensionality of PD, while for membranes with high content of DMPC, it also lowers the membrane proton barrier, i.e., the escape of protons from the surface. On the other side, the ‘stiffer’ membrane conformation at low temperatures supports lower dimensionality of PD, i.e., the emergence of proton pathways, which in turn increases the kPT−1 values. Such ‘stiffer’ membrane conformation at low temperatures also changes the membrane configuration, as can be observed by the high bending (Fig. 5d), which also results in high membrane thickness (Fig. 5b), both due to the straightening of lipid tails.
Another notable observation from the computational analysis is that for membranes with a high content of DMPA (the red and dark orange curves, correspond to DMPA and PC
:
PA of 1
:
3, respectively, in Fig. 5), the calculated parameters do not vary much as a function of temperature but only within the temperatures of their gel phase (primarily the area per lipid and membrane thickness). This observation might be correlated to the very low activation energy we found for the kPT values in this temperature range for the different membrane compositions.
(1) As expected, the PT rate from the photoacid to the membrane increases as a function of temperature, and we found the largest change while going from the gel to the liquid phase.
(2) The activation energy of the PT process between the probe and membrane is very low (∼10–40 meV), and it is also dependent on the lipid composition. In membranes with a high content of DMPA, the activation energy is lower in the gel phase than in the liquid phase, while in membranes with a high content of DMPC it is the opposite, the activation energy is lower in the liquid phase.
(3) The extracted back recombination process is also temperature-dependent, but unlike the PT process to the membrane, the rate of the reverse process (kPT−1) is decreasing as a function of temperature, i.e., it is higher in the gel phase, with no major ‘jump’ around the Tm. The extracted kinetic parameters also indicate that the concentration of protons on the surface of the membrane following the photoacid deprotonation is orders of magnitude larger than the one in the solution, thus further implying the existence of a proton barrier.
(4) The extracted dimensionality is also temperature-dependent, and it is increasing as a function of temperature. As one can expect, increasing the temperature can overcome the proton barrier of the membrane. Indeed, we observed that at high temperatures, and especially for membranes containing primarily DMPC, the extracted dimensionality is approaching 3, i.e., escape of protons from the surface to the bulk. On the other extreme, we found that except for pure DMPC membranes, at low temperatures, in the gel phase of the membrane, the dimensionality is reduced to below 2. This interesting observation implies the formation of proton pathways in the gel phase that restrict proton diffusion dimensionality, assisted by the presence of DMPA lipids.
In our study, we also performed temperature-dependent computational studies of several of the membrane's biophysical properties: membrane thickness, area per lipid, lipid diffusion, and membrane bending energy, for the different lipid compositions used in this study. The computational result also shows a major change in each of the parameters around the Tm of the membrane. Such results imply a correlation between the observed PT and PD properties of the membrane to the other biophysical properties and suggest that the PT/PD properties observed for the gel phase might be due to the ‘stiffness’ of the membrane in that phase, while for the liquid phase, it might be due to the ‘looseness’ of the membrane in that phase.
:
100 for the probe to lipid molecules. The solvent was evaporated to and a dried lipid film was formed. Later, the lipid film was rehydrated with a 5 mM phosphate buffer of pH 7.4. Finally, the solution was extruded through a polycarbonate membrane (purchased from T&T Scientific) to obtain a homogenous solution. When needed, the pH was adjusted using 0.1 M NaOH or HCl solutions.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4sc07044e |
| This journal is © The Royal Society of Chemistry 2025 |