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Powder X-ray diffraction assisted evolutionary algorithm for crystal structure prediction

Stefano Racioppi a, Alberto Otero-de-la-Roza b, Samad Hajinazar a and Eva Zurek *a
aDepartment of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, USA. E-mail: ezurek@buffalo.edu
bDepartmento de Química Física y Analítica and MALTA Consolider Team, Facultad de Química, Universidad de Oviedo, 33006 Oviedo, Spain

Received 21st August 2024 , Accepted 6th November 2024

First published on 6th November 2024


Abstract

Experimentally obtained powder X-ray diffraction (PXRD) patterns can be difficult to solve, precluding the full characterization of materials, pharmaceuticals, and geological compounds. Herein, we propose a method based upon a multi-objective evolutionary search that uses both a structure's enthalpy and similarity to a reference PXRD pattern (constituted by a list of peak positions and their intensities) to facilitate structure solution of inorganic systems. Because the similarity index is computed for locally optimized cells that are subsequently distorted to find the best match with the reference, this process transcends both computational (e.g., choice of theoretical method, and 0 K approximation) and experimental (e.g., external stimuli, and metastability) limitations. We illustrate how the proposed methodology can be employed to successfully uncover complex crystal structures by applying it to a range of test cases, including inorganic minerals, elements ramp-compressed to extreme conditions, and molecular crystals. The results demonstrate that our approach not only improves the accuracy of structure prediction, but also significantly reduces the time required to achieve reliable solutions, thus providing a powerful tool for the advancement of materials science and related fields.


1 Introduction

The crystal structure of a compound is key for predicting and rationalizing its properties.1–3 Therefore, crystal structure determination is one of the bedrocks upon which chemistry, materials science, physics, as well as earth and planetary science is based. Indeed, common to all of these fields is the need for characterizing the structure of the chemical system using various spectroscopies. While methods such as Raman, Infra-Red or Nuclear Magnetic Resonance Spectroscopy provide information that can indirectly deduce the structural motifs present, only diffraction is directly related to the atomic positions. Various diffraction techniques are available, varying according to the scattering source (X-rays, neutrons or electrons) or from the nature of the sample (powder, single crystal or even liquid). Diffraction from single crystals is the gold standard, but in practice it can be difficult or impossible to obtain single crystals of adequate quality and size to achieve a reliable structure solution. Therefore, the possibility of obtaining structural information from microcrystalline powder-like samples becomes important.4 However, unlike diffraction from single crystals, powder X-ray diffraction (PXRD) is typically not sensitive enough to provide information about the positions of light elements such as hydrogen and lithium (if combined with other heavier elements), nor can it differentiate between elements with similar mass numbers. Though neutron diffraction is sensitive to the location of light elements it requires large samples. Thus, PXRD is the most commonly used tool to deduce the structural information of battery materials, superconductors, minerals found in the deep Earth, pharmaceutical drugs, and more.1,5–7

When a good quality PXRD pattern is in-hand, it is relatively easy to retrieve information on the size of the unit cell, but a structure solution with refinement of the atomic positions remains, to date, a challenging procedure. The inherent limitation of PXRD lies in its projection of three-dimensional diffraction data onto a one-dimensional scale when measuring powder samples, often resulting in peak overlap.4,8 To perform such refinements, various techniques9–11 are available, from those developed by Rietveld12 or Le Bail13 to modellings based on reverse Monte Carlo,4,14 genetic15,16 or machine learning17,18 algorithms. Nonetheless, crystal structure solution from PXRD data remains a grand challenge in crystallography. Further complicating structural characterization is the presence of mixed-phases, sample peaks that are obscured by ones originating from the experimental apparatus, noisy background of the diffractogram, and preferred orientation of the microcrystallites. These situations are common, for example, when compounds are synthesized for the first time, matter is compressed within diamond anvil cells or in dynamic (shock or ramp) compression experiments, or simply due to the morphology of the crystallites. Because of these difficulties, theoretical calculations have become useful tools to assist structure solution given a PXRD pattern. We also mention a promising route, which has been applied to organic molecular crystals, where structures are determined directly from chemical shifts, aided by machine learning.19,20

Another strategy, popular especially in the high-pressure field, is based upon crystal structure prediction (CSP) algorithms, which aim to locate the most stable atomic configuration for a user-defined chemical composition at a given pressure and at zero temperature. Some of the most popular techniques include random or evolutionary searches, particle-swarm optimization, and Monte-Carlo or molecular dynamics based algorithms.21 In the family of evolutionary algorithms, a fitness is assigned to each DFT-optimized structure, and this fitness is related to the structure's likelihood to be chosen as a parent for the next generation.22 In a traditional evolutionary search, the fitness is obtained from the energy (or enthalpy) of the system relative to (a subset) of those that have been optimized. This fitness is crucial in driving the algorithm towards promising regions of the energy landscape in the search for thermodynamically stable structures.

However, not all of the compounds that are predicted to be the most stable are necessarily those that are experimentally observed. When compared to PXRD diffractograms, this discrepancy can be attributed to several factors, including the numerous approximations involved in the computations (e.g., choice of level of theory, pseudopotential, and the neglect of finite temperature contributions), as well as variations in synthetic and experimental conditions.23 As a result, achieving the closest match with the experimental data often necessitates screening many metastable phases, especially in the case of polymorphism, where the differences in energy between them may be minimal.24,25 This laborious manual screening process carries the risk of overlooking the optimal matching structure amid the hundreds or even thousands of predicted structures.

To circumvent this challenge and potentially steer the structure search towards a better match a constrained algorithm that focuses the search on structures with particular features (Bravais lattices, space groups, coordination numbers) has been proposed.26 However, a guiding CSP algorithm, which employs both the experimental PXRD and the DFT-calculated energy and structure simultaneously, and in an equal footing, could prove even more beneficial.

Perhaps the most intricate method proposed to date is the first-principle-assisted structure solution (FPASS) technique,27,28 which combines DFT calculations with experimental XRD data and statistical symmetry information in a genetic algorithm for structure determination. Similar methods have followed during the years, retaining the philosophy of combining information gleaned from diffraction data (lattice parameter, symmetry, stoichiometry, etc.) to reduce the space of a structure search with DFT optimization.25,29 A similarity index calculated between experimental and simulated PXRD patterns has been exploited in particle swarm optimization (PSO),30 utilizing a weighted cross-correlation function to re-evaluate the velocity of each structure in the crystal structure search. With this technique, the simulated phases that best match the experimental PXRD pattern lead the PSO search. This methodology was shown to aid the prediction of the ground state phases of ZnO and TiO2,30 however the authors did not report if their discovery was accelerated compared to a standard energy-only-search, or if this algorithm could aid in the recognition of metastable phases. Non-CSP-based approaches have also been proposed, such as molecular dynamics simulations biased by experimental diffraction data.31 For molecular organic crystals fast dispersion-corrected DFT optimizations have been proposed and used to improve the fit with the experimental PXRD patterns.32

In the present study, we outline our approach for enhancing CSP by leveraging PXRD data through a synergistic combination of the XtalOpt evolutionary algorithm22,33 and the variable-cell Gaussian powder-based similarity index (VC-GPWDF)34 implemented in the critic2 program.35 Confusingly, despite the label “similarity index”, this and similar methods actually calculate the dissimilarity between two patterns. By using the multi-objective search capability embedded in XtalOpt,36 we illustrate the CSP search is able to accelerate the structural recognition of both experimental and simulated PXRD patterns. This strategy goes beyond the aforementioned methodologies developed to assist CSP using crystallographic and diffraction information.27,30 Specifically, it overcomes many of the challenges that result from the comparison of experimental diffraction data collected at finite temperature and pressure with in silico patterns calculated for geometry-optimized structures at 0 K. Therefore, this technique becomes particularly advantageous when the reference PXRD diffractogram diverges from the computed ground state structure of a specific stoichiometry due to experimental conditions (pressure, hydrostaticity, temperature, etc.) or because of theoretical limitations; or for finding metastable phases.

2 Computational approach

2.1 Multi-objective search

The foundation of our newly proposed technique is based upon multi-objective global optimization,37 as implemented in the XtalOpt code version 13.0.36 In this extension of the XtalOpt evolutionary algorithm, the fitness of an individual structure can be based upon multiple objectives, including a structure's energy or enthalpy, as well as other user-specified features. After locally relaxing a structure, XtalOpt automatically calls the external codes specified by the user to compute the desired target properties, whose values are employed in conjunction with the enthalpy to calculate the corresponding multi-objective fitness. In the present work, the similarity in the PXRD pattern of a structure compared to that of a reference (S) is chosen as an objective to be minimized, while the enthalpy (H) is simultaneously minimized (eqn (1)). With Ss and Hs representing the numerical value of the similarity index and enthalpy of structure s, respectively, the fitness is defined through the following weighted sum:
 
image file: d4dd00269e-t1.tif(1)
Here, w is the weight assigned to the PXRD similarity objective, and Amin and Amax represent the minimum and maximum value of the objective {A = S, H} for the pool of structures. The weights of the objective are constrained to be a real number between 0 and 1, and their sum must equal 1 for the calculation of the fitness, fs. This fitness measure, subsequently, is used by XtalOpt to evaluate the suitability of candidate structures for the selection of the parent pool, from which new structures are produced by applying various evolutionary operations, as described more fully in ref. 33.

2.2 PXRD-assisted crystal structure prediction

We introduce here the XtalOpt-VC-GPWDF coupled technique, whose schematic workflow is illustrated in Fig. 1, to conduct PXRD similarity tests during the execution of the crystal structure search. In this multi-objective search, the energy or enthalpy (Hs in eqn (1)) is obtained from any external optimizer of periodic systems (herein, we employ the Vienna Ab initio Simulation Package, VASP, see also Computational details).38 The similarity of a structure's simulated PXRD pattern with that of a reference (Ss in eqn (1)) is obtained using the newly developed variable-cell Gaussian powder-based similarity index (VC-GPWDF),34 a modified version of de Gelder's similarity index,39 that ranges from 0 for identical structures to 1 for maximum dissimilarity. Analogous to other methods,40–42 the similarity is evaluated between a reference PXRD diffractogram, which can be either experimental or computer-generated, and a second diffractogram computed from one of the XtalOpt predicted structures by critic2,35 which also handles the VC-GPWDF similarity index calculation. The reference diffractogram is input as an external list of values containing the 2θ angle of diffraction, and its corresponding relative intensity [2θ; I], and then parsed by critic2. The list does not need to be continuous, nor does it need to cover the whole PXRD diffractogram range. In fact, a short list of a few specific indexed peaks, or just fragments of a PXRD diffractogram, are valid inputs as well. This aspect facilitates the PXRD-assisted crystal structure search, and is particularly useful when multiple phases are present in the sample, or when the noise is large in the experimental data.
image file: d4dd00269e-f1.tif
Fig. 1 Schematic workflow for conducting the PXRD-assisted crystal structure search with the combined XtalOpt-VC-GPWDF method.

The initial pool of structures can be generated internally using the RandSpg algorithm,43 or externally (e.g., by PyXtal44), with the structures subsequently being read in as “seeds”. Local geometry relaxations can be performed with any external code for periodic systems. The similarity index, which is used to determine the fitness of the offspring, is calculated by critic2 using the optimized geometries of the structures generated by XtalOpt and the input [2θ; I] list. The use of the similarity index in the calculation of the fitness will steer the evolutionary algorithm to favor those structures that better represent the experimental PXRD as structures for the next generation. In our implementation the nature of the (dis)similarity does not alter the evolutionary operators used or their probability, though one can imagine that could.

In the original version of de Gelder's method, a similarity index is obtained by integrating numerically the product of the powder patterns of both crystals. It assumes a value of zero if the two patterns are the same (indicating that the crystals are identical) and a value of one for completely non-overlapping patterns. In the modified versions of de Gelder's method (GPWDF and VC-GPWDF) the similarity index is calculated analytically, rather than using numerical integration, from the list of reflection angles and intensities.34 This approach is more efficient compared to de Gelder's, since it allows for the computation of analytical derivatives with respect to the structural parameters, enabling the easy minimization of the similarity index as a function of structural parameters like the lattice strain – which is the basis of the VC-GPWDF approach.

The VC-GPWDF method is exhaustively described in ref. 34; herein we provide a brief summary. In VC-GPWDF, the reference powder pattern is first pre-processed to extract the reflection angle and intensity pairs. This pre-processing step helps in circumventing the difficulties caused when comparing the pattern of calculated structures with experimental patterns that contain artifacts such as noise, varying peak shapes and widths, and a background contribution (in the present work, the user inputs a list of [2θ; I], as previously described). Given the experimental reflection angles and intensities, VC-GPWDF seeks lattice deformations (strains) of the input structure that maximize agreement with the experimental pattern. This is done by carrying out a global minimization of the GPWDF score as a function of the six lattice strains in the input structure, up to a maximum strain chosen by the user (in the present work, we employed the default values of 10% maximum deformation over the cell length and 5° for the angles). By doing this, VC-GPWDF can measure crystal similarity between structures that are not entirely comparable due to cell deformations because of, for instance, being determined under different experimental conditions or, in the case of structures calculated with DFT, due to missing vibrational effects. The final VC-GPWDF score is the smallest GPWDF among all deformations, and is equal to zero for identical crystals (after deformation). VC-GPWDF also produces the cell deformation of the input structure that maximizes agreement with the target pattern. Compared to other programs used to perform structure determination using cross-correlation functions, like the Fit with Deviating Lattice parameters (FIDEL),45VC-GPWDF has two advantages: (i) it performs a global optimization, and therefore is unlikely to get caught in a local minimum, and (ii) it uses an analytical version of de Gelder's index, enabling fast local optimizations. The whole VC-GPWDF procedure has very low computational cost, and can take seconds/minutes per structure on a desktop computer.

Let us now illustrate the power of this new technique for three inorganic systems: (1) brookite, a metastable polymorph of TiO2; (2) sodium ramp-compressed to hundreds of GPa of pressure; and (3) vaterite, a natural polytypic structure of calcium carbonate. Each system will be introduced and discussed in-depth in their specific sections, while the complete computational details are reported at the end of this work. These systems were chosen to limit the computational cost while demonstrating the advantages provided by our method, since the number of local minima scales exponentially with the degrees of freedom, 3N + 3 for a 3D crystal.46 In fact, the number of atoms in our CSP searches is not greater than 60 per unit cell, reached by CaCO3 with Z = 12 (see Computational details). However, the PXRD-assisted strategy could, in principle, be applied to larger systems (depending on the available computational resources, and on the method used for local relaxation), for which the acceleration would be even more evident compared to random or unassisted searches.

3 Results and discussion

3.1 TiO2 – brookite

TiO2 naturally exists in three different polymorphs at ambient conditions: anatase (I41/amd), brookite (Pbca) and rutile (P42/mnm) with 4, 8 and 2 formula units (FUs), respectively, in their conventional unit cells (Fig. 2). These polymorphs have been frequently used as benchmarks for CSP methods and related computational models.22,26,30,43 At the PBE level of theory, we predict anatase as the ground state, followed by brookite (ΔE = 13.5 meV per atom) and rutile (ΔE = 26.7 meV per atom), in-line with previous DFT calculations.26 Some classic interatomic potentials developed for this system, however, predict different stability orderings.26
image file: d4dd00269e-f2.tif
Fig. 2 Polymorphs of TiO2 and their simulated powder X-ray diffraction (PXRD) patterns. Conventional unit cells of the three natural polymorphs of TiO2 at ambient conditions: anatase (I41/amd, 4 FU), brookite (Pbca, 8 FU) and rutile (P42/mnm, 2 FU). Titanium atoms are blue, oxygen red. Below, we show the PXRD pattern generated from the three phases (λ = 1.54056 Å, which corresponds to the wavelength of Cu Kα radiation) and the corresponding similarity index calculated by VC-GPWDF using the PXRD-pattern of brookite as reference. The patterns shown are for the smallest similarity index that can be obtained by varying the unit cell parameters.

A typical CSP search performed on TiO2 will almost certainly locate the ground state phase, in this case, anatase (within the PBE approximation and ensuring that the FUs considered in the search include multiples of 4). While a standard CSP search is also likely to discover metastable rutile, owing to its high-symmetry and small unit cell, brookite may be difficult to find due to its metastability and low symmetry. Indeed, in an earlier study, a regular CSP search on TiO2 with 8 FU found anatase, rutile and brookite as the 187th, 559th and 1141st crystals optimized, respectively.26 A constrained search, where the parent pool was restricted to those structures that possessed an orthorhombic Bravais lattice only, accelerated the discovery of brookite (as the 345th structure). Another way in which brookite might be found is by steering an evolutionary algorithm with additional information, such as PXRD data, as we illustrate below.

In the bottom panel of Fig. 2, the PXRD pattern of the geometry-optimized structures of the three aforementioned polymorphs of titanium dioxide are plotted. The similarity to brookite, where the reference PXRD data was generated with Mercury 2022.3.0 (ref. 47) in the range from 1° to 120° in 2θ with a step of 0.1°, from the experimental structure collected by Meagher and Lager at room temperature (ICSD = 36408; lattice parameters in Å: a = 5.138, b = 9.174, c = 5.449)48 is also provided. Despite the fact that the similarity index (or dissimilarity) is low, 0.01, the DFT-optimized cell parameters are quite different from that of the reference: a = 5.192 Å, b = 9.274 Å, c = 5.509 Å. In fact, if we calculated the similarity index using the DFT-optimized structure directly, as proposed in other methodologies (see Introduction), a value of 0.17 would be obtained (to be compared to 0.43 for anatase and 0.93 for rutile). Because VC-GPWDF performs unit cell deformations, which include varying the DFT-optimized cell parameters during the comparison of the reference and trial structures, it becomes possible to retrieve a nearly zero similarity index for the correct structure. The cell parameters of the relaxed structure post-refinement with VC-GPWDF are varied to a = 5.140 Å, b = 9.171 Å and c = 5.447 Å, which almost exactly coincides with the reference structure.

Now that we have described how the VC-GPWDF method can modulate a DFT-optimized structure, so that it provides the best match with the reference, let us examine the optimal similarity it provides between brookite and the two higher symmetry polymorphs. The main difference between the diffractogram of orthorhombic brookite with the one computed for the two tetragonal phases is the number of peaks, which is much larger in the less symmetric case. Moreover, brookite presents three intense peaks at low angles, two of them very close to each other (25.3°, 25.7° and 30.8° in 2θ degree, respectively), while in the tetragonal phases, only one high intensity peak is found. One of the reasons why rutile has a larger similarity index to brookite than anatase, is that in anatase the intense peak is in a range of 2θ similar to where the first doublet of peaks in brookite is found, while in rutile it is at a higher angle (∼27°).

Now, let's put the VC-GPWDF similarity index in action with XtalOpt to predict the metastable, low symmetry, phase of TiO2, brookite. To begin, two single-objective (classic enthalpy based) CSP runs with 8 FU in the cell (24 atoms) were performed as reference tests generating a total of 1000 structures each (Table 1). In both searches, brookite was not found, while the more symmetric anatase and rutile were generated, in-line with previous studies where 1100+ structures were optimized to find the orthorhombic phase.26 Coupling XtalOpt with the VC-GPWDF algorithm to perform the multi-objective search, it was possible to find brookite in shorter evolutionary searches (see Table 1). However, this success appeared to be sensitive to the fitness weight parameter connected to the PXRD data (eqn (1)). In this test, brookite was successfully found using w ≥ 0.6 prompting us to analyze how the choice of the weight influences the fitness of the three polymorphs of TiO2 (Section S1). The fitness is related to the probability that a structure has for being chosen as a parent in the evolutionary search, but there are other factors, including the symmetry and the types of lattices in the initial pool, as well as the random parameters chosen during the course of the CSP search, which also influence a structure's discovery. Though the fitness of brookite was higher than that of anatase already using a weight of 0.1, this polymorph was not discovered in our short CSP search even when a weight of 0.3 was used. While it is probable that brookite could be found in fewer structures than in a regular search (∼1100) with this weight, increasing the weight to 0.6 hastens its appearance by more than a factor of two.

Table 1 Benchmark tests on TiO2-brookite using single- or multi-objective crystal structure prediction runs with 8 formula units. The number of total structures-per-run (# structures), the weight assigned to the powder X-ray diffraction similarity objective (w), and the output result of the search (if brookite was found or not), are reporteda
Run Single-objective Multi-objective
1 2 1 2 3
a If the Pbca brookite phase was fortuitously generated in the initial pool by RandSpg, the run was repeated.
# Structures 1000 1000 500 500 500
w 0.0 0.0 0.3 0.6 0.9
Brookite No No No Yes Yes


In the past, when the multi-objective PXRD search was not available, it was suggested that constraining the breeding pool to structures whose (sub)lattice was consistent with a particular Bravais lattice or space group (potentially deduced from a diffractogram) could be employed for unveiling the structure of a synthesized compound.49 However, as shown in the following two examples, the PXRD search proposed herein is preferred since it accounts for possible variations in the crystal lattice (see below, Na in ramp-compression), and constraining a CSP search with an indexed unit cell might even be counter-productive in some rare cases (see below, The tricky case of vaterite).

3.2 Na in ramp-compression experiments

High-quality, and perhaps already indexed PXRD data can surely increase the success of the multi-objective search strategy that we describe above. However, data collected at extreme conditions, such as in dynamic or ramp compression experiments that explore the chemistry of the interiors of planets or high-energy-density quantum matter,50 often require substantial support from theory for their interpretation. In fact, the data obtained in these experiments is obscured by noisy background, mostly sourced by the hot plasma ablated by the sample target during the laser irradiation,51 jeopardizing the indexing of weak reflection's peaks, which might be covered by the background. Therefore, the comparison with PXRD data simulated from theoretical structures is often necessary to identify a phase in shock experiments. Despite this synergistic approach, the structural determination of new phases measured at extreme conditions still remains a great scientific challenge.52

A noisy background is not the only challenge in the structural solution from shock and ramp compression experiments. In fact, the kinetics in dynamic compression experiments, together with the uniaxial orientation of the shock front can alter the expected (theoretical) PT path followed in a phase diagram, greatly diverging from the ideal thermodynamic path at low temperature, and leading to unexpected phase transitions, or even decompositions.53 Yet, these variables are nothing but additional coordinates of the phase diagram of a compound that must be explored to understand the behavior of matter at extreme conditions.50 From the theoretical point of view, this means that the system must be simulated with techniques beyond the standard 0 K DFT approximation, including quasi-harmonic phonons to account for the thermal volume expansion,54 or by performing expensive molecular dynamics simulations.55 Moreover, the computational reproduction of an anisotropic (e.g., uniaxial) compression can be a challenging task even for simple unary systems.56 Therefore, the possibility to perform volume-cell modulations on-the-fly, and emulate all the effects that contribute to the divergence from an ideal compression experiment, can become useful for a rapid, but meaningful, interpretation of the experimental data. Below, we illustrate the power of this approach on Na, which assumes the iconic hP4 insulating electride phase, observed for the first time in diamond anvil cells at ∼200 GPa,57 where the electronic structure could be rationalized using a multi-center bonding scheme.58

Studying Na to pressures above 200 GPa, conditions that are accessible mostly with dynamic compression techniques, is currently of great interest as the findings will address important questions for theory and for condensed matter physics.59 Therefore, recent laser-driven ramp compression experiments where sodium was squeezed to a nearly 7-fold increase in density at a pressure of 500 GPa (and a temperature of ∼1500–3000 K) were performed.59In situ XRD revealed a series of peaks obtained at the highest pressures that could be indexed as the hP4 phase, but the peaks observed between 242–292 GPa were not consistent with hP4 and were instead interpreted as either the cI16 structure (previously observed between 108–120 GPa (ref. 60)) or an R[3 with combining macron]m phase. A following theoretical study,61 however, revealed that both cI16 and R[3 with combining macron]m were not dynamically stable at the experimentally attained PT conditions. In 0 K CSP searches hP4 emerges as by far the most stable phase at the pressures attained in experiment, but a subset of seven systems was also found, and computed to be preferred at high temperatures within the quasi-harmonic approximation.61 Unfortunately, none of their diffraction patterns and densities were fully consistent with the experiments.

To identify a Na structure that could have been created using ramp compression, we carried out a VC-GPWDF assisted multi-objective CSP search for Na at 315 GPa using the experimental data published in ref. 59, and a weight of 0.7. In this case, the reference list of reflection values is constituted by only six indexed peaks (six [2θ; I] pairs), also to avoid contamination from the high noise over the experimental 2θ range (Fig. 3a). This search found that the phase producing the best similarity index was actually hP4, the expected ground state at these conditions. So why wasn't it previously identified by either experiment or by theory? The answer stems from the severe distortions the structure seems to undergo during the ramp-compression, which cannot be emulated by the standard 0 K DFT optimization or molecular dynamics with isotropic pressure, but that is easily revealed by the cell-variation routine in VC-GPWDF.


image file: d4dd00269e-f3.tif
Fig. 3 Simulated XRD patterns and experimental lineouts of Na structures under pressure. (a) Section of the diffraction pattern measured by Polsin et al.59 (black line) together with the diffraction lines calculated from the DFT-optimized (red line) and refined (blue line) structures of Na-hP4 (λ = 1.481 Å, see ref. 59). The similarity index changed from 0.991 (hP4) to 0.086 (hP4*) upon refinement. The calibration peak in the diffraction data is shaded in green. (b) View of the unit cell of Na-hP4 along the (110) plane, as optimized by DFT (hP4), and after the volume-cell refinement with VC-GPWDF (hP4*).

In Fig. 3 we illustrate the structure of the hP4 phase as it emerges from the DFT optimization and post-refinement with VC-GPWDF (hP4*), coupled with the diffraction peaks that these two phases yield overlaid on the XRD data collected by Polsin et al.59 The main structural difference between hP4 and hP4* is the extra anisotropic compression along the c-axis (Fig. 3b) estimated to be equal to ∼425 GPa (DFT stress value) and compared to the ∼370 GPa obtained along the a- and b-axes, causing the lowered c/a ratio and the increased density of the crystal. The subsequent effect of this distortion on the calculated diffraction lines is, on one hand, to move the (101) to higher 2θ angles, and on the other hand to almost merge the reflections from the (102) and the (2–10) planes (Fig. 3a), matching with the doublet peaks experimentally observed at ∼63°.

In Na-hP4* the density increases up to 6.3–6.4 g cm−3, which is relatively high compared to what is expected from 0 K DFT calculations on hP4.57 However, the pressure versus density curve of sodium can deviate quite substantially from the ideal trend, and produce very different results depending on the experimental conditions.59 For example, at 300 GPa, the density of sodium can be estimated as being ∼3.5 g cm−3 following the Sesame principal Hugoniot, or being ∼5.9–6.0 g cm−3 if extrapolated using static compression data from the FCC and BCC phases.59 Moreover, hP4* is calculated to be 199 meV per atom higher in enthalpy than the fully relaxed hP4 structure (while retaining all real phonons, see Fig. S1), which is nonetheless accessible based on the estimated temperature in Polsin's experiment (∼2200 K).59 The weak peak at ∼42° that was previously indexed as the hP4 (101), was suggested to indicate that multiple phases coexisted, resulting from pressure and temperature gradients present in the sample, in-line with prior interpretations.59,61

Na-hP4* is a distorted structure that cannot be obtained with classic DFT geometry optimizations at high-pressure or molecular dynamics simulations, since in both cases, the system would evolve towards the most stable (relaxed) configuration. Instead, Na-hP4* mirrors the effects of anisotropic/uniaxial compression along the c-axis and the thermal expansion, which are extrapolated and accessed thanks to the iterative refinement over the experimental data. Though, it is not possible to unequivocally identify the phase observed by Polsin et al.59 as hP4*, it is worth noting that the PXRD assisted CSP with XtalOpt-VC-GPWDF could access interesting new alternatives for the interpretation of challenging data collected at extreme conditions.52,62

3.3 The tricky case of vaterite

Among the biogenic minerals, calcium carbonate (CaCO3) is arguably the most abundant. From the three known anhydrous crystalline polymorphs of CaCO3, calcite, aragonite and vaterite, the latter is the least stable, but still commonly found in nature.63 Surprisingly, despite the nearly 100 year debate on its crystal structure, an apparently satisfying solution was proposed only very recently.64 Specifically, it was suggested that vaterite should be regarded as a polytypic structure, a specific type of polymorphism built up by a stacking of almost identical layers, which differ in their stacking sequence. This has made vaterite a very challenging system to solve, even combining several experimental techniques,64 and almost impossible with computational methods alone. In fact, though vaterite is a relatively simple mineral (composition-wise), it cannot be solved solely with standard CSP methods, even with the possibility of using supercells. Therefore, what can a structure search do to support the solution of such challenging systems? This is what we will try to understand with this last example using our new methodology.

The multi-objective evolutionary search coupled with VC-GPWDF is obviously limited by the type of PXRD data used. In this case, it was possible to retrieve two extensive lists of peaks [2θ; I] from the studies performed by Le Bail et al.65 and by DuPont et al.,66 and two CSP runs using a weight of 0.7 were carried out using one, or the other, as a reference. In Fig. 4, we plot the energy difference (relative to calcite) vs. similarity index of the phases output by the CSP runs, focusing on those identified as good matches (similarity index < 0.1).


image file: d4dd00269e-f4.tif
Fig. 4 Plot of the properties of the structures predicted with XtalOpt-VC-GPWDF for vaterite. The relative energies (using calcite as a reference) versus similarity index generated using (a) Le Bail's65 and (b) DuPont's66 experimental powder X-ray diffractograms.

Using the data indexed by Le Bail et al.65 (Fig. 4a), it is not surprising to see that the proposed Ama2 phase was predicted by our PXRD assisted-CSP as the best match. However, using this list of peaks, our search also found the Pnma structure proposed by Meyer,67 which is ∼35 meV per atom more stable than the Ama2 phase proposed by Le Bail, as well as the P212121 phase proposed by DeMichelis68 (which is isoenergetic to Pnma). Using the second set of data, collected by DuPont et al.66 (Fig. 4b), yields different results. The structures proposed previously by Le Bail65 (Ama2), Meyer67 (Pnma) and DeMichelis68 (P212121) were still found. Notice that the similarity index of the recurrent structures changes from one data set to another, but it is consistently very low (<0.1).

Moreover, the two assisted searches have also generated new structures having excellent similarity index and a low energy (only ∼10 meV per atom above calcite), and not proposed in past works, which are commented on in Section S4. The most interesting result obtained with DuPont's data is probably the prediction of both the C2 and C2/c structures, previously predicted in another work by DeMichelis et al.,69 which differ by the specific orientation of the carbonate group along the stacking direction of the layers. These two structures are extremely important, since they form the sub-set of phases composing the polytypic crystal structure recently proposed.64

These results show how the coupled XtalOpt-VC-GPWDF algorithm can support the solution of complicated crystal structures such as vaterite, without the need of performing crystal structure searches on supercells as large as the real crystal, which would be computationally inaccessible. Our method was able to generate, almost on-the-fly, most of the crystal structures proposed for vaterite in past theoretical and experimental works, including those forming the polytypic structure, and ranking them by energy and similarity with the experimental PXRD. As we have postulated, even by generating the correct metastable crystal structure, it would have been impossible to thoroughly solve the case of vaterite. However, our new methodology was able to provide all the building blocks necessary to construct the polytypic model that solves the intricate crystal structure of vaterite, supporting crystallographers dealing with such challenging systems.

4 Conclusions

We have introduced a powder X-ray diffraction-assisted crystal structure prediction method that employs both the enthalpy of a structure and its similarity index, as compared to that of a reference X-ray diffraction pattern, in an equal footing. This technique has been implemented within the open-source evolutionary algorithm code, XtalOpt. The similarity index is calculated using VC-GPWDF, a modified version of de Gelder's similarity index, which assesses the overlap between diffraction patterns through a cross-correlation function upon iterative distortions of the unit cells. Either complete or partial PXRD patterns can be used to assist the crystal structure predictions, which can depend on the availability and quality of the experimental data. This similarity index is then used to determine the value of the fitness in XtalOpt's multi-objective global optimization process. Our method is shown to be optimal for identifying metastable phases, facilitating the identification of polymorphs in inorganic samples, and aiding in the analysis of structures distorted by the extreme conditions created in shock and ramp compression experiments. Moreover, it is also effective in identifying challenging structures such as polytypic systems. Thanks to the cell-variation procedure, it is likely that a target structure might also be found from geometries optimized at low levels of theory (e.g., DFTB, machine-learned potentials, low energy cut-offs or sparse k-point meshes), even in the case where the energy order is not correct, since for the PXRD only the structural information is relevant. However, care would need to be taken so the computational parameters employed yield sufficiently accurate forces to ensure reasonable optimizations. We believe that the coupled XtalOpt-VC-GPWDF tool will be highly beneficial for crystallographers, chemists, materials scientists and geochemists for the solution of challenging structures at ambient and extreme conditions.

5 Methods

5.1 Computational details

The open-source evolutionary algorithm XtalOpt33,36 version 13.0 was employed for crystal structure prediction, using the multi-objective fitness measure. The parameters employed in XtalOpt are thoroughly described in ref. 22. The initial generation consisted of random symmetric structures that were created by the RandSpg algorithm,43 except in the case of CaCO3, where the initial generation was created externally with PyXtal44 then imported as seeds, using Ca atoms and CO3 trigonal planar units. PyXtal was employed for this purpose, because the generation of symmetric crystals containing molecular fragments for the initial pool of structures is not implemented in XtalOpt. The number of initial structures was equal to 50 in all cases. We believe that the first generation of structures could be improved using automated classifications,70 by generating a more accurate initial pool of structures, focusing on the most probable space groups identified by the machine learning engine, a possibility that we will explore in future works. The number of formula units (FUs) was set equal to 8 in the case of TiO2 to automatically cover the FU of all the natural polymorphs, i.e. anatase (4 FU), brookite (8 FU) and rutile (2 FU); 4, 6, 8, 12, 20, 24 and 32 in Na; and 4, 6, 8 and 12 in CaCO3. A sum of the atomic radii scaled by a factor of 0.7 was used to determine the shortest distances allowed between pairs of atoms. Duplicate structures were identified and removed from the breeding pool using the XtalComp algorithm.71 For the TiO2-brookite test, the total number of generated structures could vary from 500 to 1000 (see Section TiO2 – brookite). For the tests performed on high-pressure Na and CaCO3, the total number of generated structures per run was equal to 1000. Each structure search followed a multi-step strategy, with three subsequent optimizations with increased level of accuracy, plus a final accurate single point (see below).

Geometry optimizations and electronic structure calculations were performed using Density Functional Theory (DFT) with the Vienna Ab initio Simulation Package (VASP), version 6.4.2.38 The PBE72 exchange–correlation functional was employed. The projector augmented wave (PAW) method73 was used to treat the core states in combination with a plane-wave basis set with an energy cutoff of 500 eV. The O 2s22p4 (PAW_PBE O_s), Ti 3d34s1 (PAW_PBE Ti), Na 2p63s1 (PAW_PBE Na_pv), Ca 3p64s2 (PAW_PBE Ca_pv) and the C 2s22p2 (PAW_PBE C_s) states were treated explicitly. The k-point meshes were generated using the Γ-centered Monkhorst–Pack scheme,74 and the number of divisions along each reciprocal lattice vector was selected so that the product of this number with the real lattice constant was greater than or equal to a given value. The values of 20, 25 and 30 Å were used for the three subsequent optimization steps in the crystal structure search of TiO2 and CaCO3, then a value of 50 Å was used for the final single point. In the case of sodium, a value of 40 Å was used at each optimization step, and one of 50 Å for the final single point. The accuracy of the energy convergence was set to increase from 10−3 to 10−5 eV for the optimizations, and to 10−6 for the final single point on the structures for which the norms of all the forces calculated during the relaxations were smaller than 10−3 eV Å−1. A Gaussian smearing was used at each optimization step, and for each system with a sigma of 0.02 eV. The tetrahedron method was adopted in the last single point.75

CSP methods employ metaheuristic algorithms, which do not always guarantee that the optimal solution, or set of optimal solutions are found. Therefore, in addition to varying the parameters employed in a standard CSP search,22 a user may need to perform searches where the weights in the objective function are varied (as in Section 3.1), or explore a range of potential solutions identified by plotting the enthalpies of the optimized structures versus their similarity index (as in Section 3.3) to find the most likely candidate structure.

Data availability

The data supporting the article has been included as part of the ESI. The crystal structure prediction code XtalOpt is open source and it can be downloaded at this link https://xtalopt.github.io/. The code VASP, used for the density functional theory calculations, is commercial, and needs to be purchased. The code critic2, used to calculate the similarity index, is open source, and it can be downloaded at this link https://aoterodelaroza.github.io/critic2/. The script used to guide the crystal structure prediction performed by XtalOpt with the experimental data is provided in the ESI of the manuscript, together with a step-by-step procedure for its use. The refined Na-hP4* structure and new Pca21 and P21/c CaCO3 phases are provided in a separate folder as cif-files.

Author contributions

The project was conceptualized by E. Z. and S. R.; data curation and formal analysis was performed by S. R.; the funding acquisition was carried out by E. Z. and A. O. R.; the methodology was developed and implemented by S. R., S. H. and A. O. R. The responsibility of the project administration was done by E. Z. and S. R.; while resources were provided by E. Z., who is also the supervisor of the project. S. R, S. H. and A. O. R. took care of the software development, while S. R. was responsible for the validation of the methodology. All authors contributed in writing and reviewing the draft. We also thank Dr Xiaoyu Wang for the valuable discussions.

Conflicts of interest

There are no conflicts to declare.

Acknowledgements

Funding for this research is provided by the Center for Matter at Atomic Pressures (CMAP), a National Science Foundation (NSF) Physics Frontier Center, under Award PHY-2020249 and the NSF award DMR-2119065. Calculations were performed at the Center for Computational Research at SUNY Buffalo (http://hdl.handle.net/10477/79221). AOR thanks the Spanish Agencia Estatal de Investigación, projects PGC2021-125518NB-I00, RED2022-134388-T cofinanced by EU FEDER funds; the Spanish MCIN/AEI/10.13039/501100011033 and European Union NextGenerationEU/PRTR for grants TED2021-129457B-I00, and CNS2023-144958, and MareNostrum5 and the technical support provided by BSC (RES-AECT-2024-2-0010).

Notes and references

  1. S. Datta and D. J. W. Grant, Nat. Rev. Drug Discovery, 2004, 3, 42–57 CrossRef CAS PubMed.
  2. M. D. Allendorf, C. a. Bauer, R. K. Bhakta and R. J. T. Houk, Chem. Soc. Rev., 2009, 38, 1330–1352 RSC.
  3. M. De Jong, W. Chen, T. Angsten, A. Jain, R. Notestine, A. Gamst, M. Sluiter, C. K. Ande, S. Van Der Zwaag, J. J. Plata, C. Toher, S. Curtarolo, G. Ceder, K. A. Persson and M. Asta, Sci. Data, 2015, 2, 150009 CrossRef CAS.
  4. K. D. M. Harris, M. Tremayne and B. M. Kariuki, Angew. Chem., Int. Ed., 2001, 40, 1626–1651 CrossRef CAS.
  5. E. Fomina, E. Kozlov and S. Ivashevskaja, Powder Diffr., 2019, 34, S59–S70 CrossRef CAS.
  6. T. Duffy, N. Madhusudhan and K. K. M. Lee, in Treatise on Geophysics, Elsevier B.V., 2nd edn, 2015, vol. 2, pp. 149–178 Search PubMed.
  7. J. A. Flores-Livas, L. Boeri, A. Sanna, G. Profeta, R. Arita and M. Eremets, Phys. Rep., 2020, 856, 1–78 CrossRef CAS.
  8. A. Altomare, IUCrJ, 2022, 9, 403–405 CrossRef CAS PubMed.
  9. R. Černý, Crystals, 2017, 7, 142 CrossRef.
  10. R. Černý and V. Favre-Nicolin, Z. Kristallogr., 2007, 222, 105–113 Search PubMed.
  11. W. I. F. David and K. Shankland, Acta Crystallogr., Sect. A: Found. Crystallogr., 2008, 64, 52–64 CrossRef CAS.
  12. H. M. Rietveld, J. Appl. Crystallogr., 1969, 2, 65–71 CrossRef CAS.
  13. A. Le Bail, Powder Diffr., 2005, 20, 316–326 CrossRef CAS.
  14. K. D. M. Harris and M. Tremayne, Chem. Mater., 1996, 8, 2554–2570 CrossRef CAS.
  15. B. M. Kariuki, H. Serrano-González, R. L. Johnston and K. D. M. Harris, Chem. Phys. Lett., 1997, 280, 189–195 CrossRef CAS.
  16. K. D. M. Harris, Comput. Mater. Sci., 2009, 45, 16–20 CrossRef CAS.
  17. J. Schuetzke, A. Benedix, R. Mikut and M. Reischl, IUCrJ, 2021, 8, 408–420 CrossRef CAS.
  18. E. A. Riesel, T. Mackey, H. Nilforoshan, M. Xu, C. K. Badding, A. B. Altman, J. Leskovec and D. E. Freedman, J. Am. Chem. Soc., 2024, 146, 30340–30348 CrossRef CAS.
  19. M. Cordova and L. Emsley, J. Am. Chem. Soc., 2023, 145, 16109–16117 CrossRef CAS.
  20. M. Balodis, M. Cordova, A. Hofstetter, G. M. Day and L. Emsley, J. Am. Chem. Soc., 2022, 144, 7215–7223 CrossRef CAS.
  21. A. R. Oganov, C. J. Pickard, Q. Zhu and R. J. Needs, Nat. Rev. Mater., 2019, 4, 331–348 CrossRef.
  22. Z. Falls, P. Avery, X. Wang, K. P. Hilleke and E. Zurek, J. Phys. Chem. C, 2021, 125, 1601–1620 CrossRef CAS.
  23. M. A. Neumann, F. J. J. Leusen and J. Kendrick, Angew. Chem., Int. Ed., 2008, 47, 2427–2430 CrossRef CAS PubMed.
  24. A. G. Shtukenberg, Q. Zhu, D. J. Carter, L. Vogt, J. Hoja, E. Schneider, H. Song, B. Pokroy, I. Polishchuk, A. Tkatchenko, A. R. Oganov, A. L. Rohl, M. E. Tuckerman and B. Kahr, Chem. Sci., 2017, 8, 4926–4940 RSC.
  25. E. J. Chan, A. G. Shtukenberg, M. E. Tuckerman and B. Kahr, Cryst. Growth Des., 2021, 21, 5544–5557 CrossRef CAS.
  26. B. Wang, K. P. Hilleke, S. Hajinazar, G. Frapper and E. Zurek, J. Chem. Theory Comput., 2023, 19, 7960–7971 CrossRef CAS.
  27. B. Meredig and C. Wolverton, Nat. Mater., 2013, 12, 123–127 CrossRef CAS PubMed.
  28. L. Ward, K. Michel and C. Wolverton, Phys. Rev. Mater., 2017, 1, 063802 CrossRef.
  29. H. Ling, J. Montoya, L. Hung and M. Aykol, Comput. Mater. Sci., 2022, 214, 111687 CrossRef CAS.
  30. P. Gao, Q. Tong, J. Lv, Y. Wang and Y. Ma, Comput. Phys. Commun., 2017, 213, 40–45 CrossRef CAS.
  31. N. Tsujimoto, D. Adachi, R. Akashi, S. Todo and S. Tsuneyuki, Phys. Rev. Mater., 2018, 2, 053801 CrossRef CAS.
  32. J. Van De Streek and M. A. Neumann, Acta Crystallogr., Sect. B: Struct. Sci., Cryst. Eng. Mater., 2014, 70, 1020–1032 CrossRef CAS PubMed.
  33. D. C. Lonie and E. Zurek, Comput. Phys. Commun., 2011, 182, 372–387 CrossRef CAS.
  34. A. Otero-De-La-Roza, J. Appl. Crystallogr., 2024, 57, 1401–1414 CrossRef CAS.
  35. A. Otero-De-La-Roza, E. R. Johnson and V. Luaña, Comput. Phys. Commun., 2014, 185, 1007–1018 CrossRef CAS.
  36. S. Hajinazar and E. Zurek, Comput. Phys. Commun., 2024, 304, 109306 CrossRef CAS.
  37. K. Deb, Multi-objective Optimisation Using Evolutionary Algorithms: An Introduction, Multi-objective Evolutionary Optimisation for Product Design and Manufacturing, ed. L. Wang, A. H. C. Ng and K. Deb, Springer, London, 2011, pp. 3–34 Search PubMed.
  38. G. Kresse and J. Hafner, Phys. Rev. B: Condens. Matter Mater. Phys., 1994, 49, 14251–14269 CrossRef CAS PubMed.
  39. R. De Gelder, R. Wehrens and J. A. Hageman, J. Comput. Chem., 2001, 22, 273–289 CrossRef CAS.
  40. R. A. Mayo, K. M. Marczenko and E. R. Johnson, Chem. Sci., 2023, 14, 4777–4785 RSC.
  41. R. A. Mayo and E. R. Johnson, CrystEngComm, 2021, 23, 7118–7131 RSC.
  42. R. A. Mayo, A. Otero-De-la-Roza and E. R. Johnson, CrystEngComm, 2022, 24, 8326–8338 RSC.
  43. P. Avery and E. Zurek, Comput. Phys. Commun., 2017, 213, 208–216 CrossRef CAS.
  44. S. Fredericks, K. Parrish, D. Sayre and Q. Zhu, Comput. Phys. Commun., 2021, 261, 1–10 CrossRef.
  45. S. Habermehl, P. Mörschel, P. Eisenbrandt, S. M. Hammer and M. U. Schmidt, Acta Crystallogr., Sect. B: Struct. Sci., Cryst. Eng. Mater., 2014, 70, 347–359 CrossRef CAS.
  46. F. H. Stillinger, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top., 1999, 59, 48–51 CrossRef CAS.
  47. C. F. MacRae, I. Sovago, S. J. Cottrell, P. T. A. Galek, P. McCabe, E. Pidcock, M. Platings, G. P. Shields, J. S. Stevens, M. Towler and P. A. Wood, J. Appl. Crystallogr., 2020, 53, 226–235 CrossRef CAS PubMed.
  48. E. P. Meagher and G. A. Lager, Can. Mineral., 1979, 17, 77–85 CAS.
  49. K. P. Hilleke, X. Wang, D. Luo, N. Geng, B. Wang and E. Zurek, Phys. Rev. B, 2023, 014511 CrossRef CAS.
  50. C. S. Yoo, Matter Radiat. Extremes, 2020, 5, 018202 CrossRef CAS.
  51. J. R. Rygg, J. H. Eggert, A. E. Lazicki, F. Coppari, J. A. Hawreliak, D. G. Hicks, R. F. Smith, C. M. Sorce, T. M. Uphaus, B. Yaakobi and G. W. Collins, Rev. Sci. Instrum., 2012, 83, 113904 CrossRef CAS PubMed.
  52. M. G. Gorman, S. Elatresh, A. Lazicki, M. M. E. Cormier, S. A. Bonev, D. McGonegle, R. Briggs, A. L. Coleman, S. D. Rothman, L. Peacock, J. V. Bernier, F. Coppari, D. G. Braun, J. R. Rygg, D. E. Fratanduono, R. Hoffmann, G. W. Collins, J. S. Wark, R. F. Smith, J. H. Eggert and M. I. McMahon, Nat. Phys., 2022, 18, 1307–1311 Search PubMed.
  53. A. Vailionis, E. G. Gamaly, V. Mizeikis, W. Yang, A. V. Rode and S. Juodkazis, Nat. Commun., 2011, 2, 445 Search PubMed.
  54. J. Wu, F. González-Cataldo and B. Militzer, Phys. Rev. B, 2021, 104, 014103 CrossRef CAS.
  55. S. Hamel, L. X. Benedict, P. M. Celliers, M. A. Barrios, T. R. Boehly, G. W. Collins, T. Döppner, J. H. Eggert, D. R. Farley, D. G. Hicks, J. L. Kline, A. Lazicki, S. Lepape, A. J. MacKinnon, J. D. Moody, H. F. Robey, E. Schwegler and P. A. Sterne, Phys. Rev. B: Condens. Matter Mater. Phys., 2012, 86, 094113 CrossRef.
  56. L. He, D. Polsin, S. Zhang, G. W. Collins and N. Abdolrahim, Sci. Rep., 2022, 12, 18954 CrossRef CAS.
  57. Y. Ma, M. Eremets, A. R. Oganov, Y. Xie, I. Trojan, S. Medvedev, A. O. Lyakhov, M. Valle and V. Prakapenka, Nature, 2009, 458, 182–185 CrossRef CAS PubMed.
  58. S. Racioppi, C. V. Storm, M. I. McMahon and E. Zurek, Angew. Chem., Int. Ed., 2023, 27, e202310802 Search PubMed.
  59. D. N. Polsin, A. Lazicki, X. Gong, S. J. Burns, F. Coppari, L. E. Hansen, B. J. Henderson, M. F. Huff, M. I. McMahon, M. Millot, R. Paul, R. F. Smith, J. H. Eggert, G. W. Collins and J. R. Rygg, Nat. Commun., 2022, 13, 2534 CrossRef CAS.
  60. M. I. McMahon, E. Gregoryanz, L. F. Lundegaard, I. Loa, C. Guillaume, R. J. Nelmes, A. K. Kleppe, M. Amboage, H. Wilhelm and A. P. Jephcoat, Proc. Natl. Acad. Sci. U. S. A., 2007, 104, 17297–17299 CrossRef CAS.
  61. B. Wang, K. P. Hilleke, X. Wang, D. N. Polsin and E. Zurek, Phys. Rev. B, 2023, 107, 184101 CrossRef CAS.
  62. X. Gong, D. N. Polsin, R. Paul, B. J. Henderson, J. H. Eggert, F. Coppari, R. F. Smith, J. R. Rygg and G. W. Collins, Phys. Rev. Lett., 2023, 130, 76101 CrossRef CAS PubMed.
  63. J. D. C. McConnell, Mineral. Mag. J. Mineral. Soc., 1960, 32, 535–544 CrossRef CAS.
  64. X. San, J. Hu, M. Chen, H. Niu, P. J. M. Smeets, C. D. Malliakas, J. Deng, K. Koo, R. dos Reis, V. P. Dravid and X. Hu, Nat. Commun., 2023, 14, 7858 CrossRef CAS.
  65. A. Le Bail, S. Ouhenia and D. Chateigner, Powder Diffr., 2011, 26, 16–21 CrossRef CAS.
  66. L. Dupont, F. Portemer and M. Figlarz, J. Mater. Chem., 1997, 7, 797–800 RSC.
  67. H. J. Meyer, Angew. Chem., Int. Ed., 1959, 71, 678 Search PubMed.
  68. R. Demichelis, P. Raiteri, J. D. Gale and R. Dovesi, CrystEngComm, 2012, 14, 44–47 RSC.
  69. R. Demichelis, P. Raiteri, J. D. Gale and R. Dovesi, Cryst. Growth Des., 2013, 13, 2247–2251 CrossRef CAS.
  70. J. E. Salgado, S. Lerman, Z. Du, C. Xu and N. Abdolrahim, npj Comput. Mater., 2023, 9, 214 CrossRef.
  71. D. C. Lonie and E. Zurek, Comput. Phys. Commun., 2012, 183, 690–697 CrossRef CAS.
  72. J. P. Perdew, K. Burke and M. Ernzerhof, Phys. Rev. Lett., 1996, 77, 3865–3868 CrossRef CAS PubMed.
  73. P. E. Blöchl, Phys. Rev. B: Condens. Matter Mater. Phys., 1994, 50, 17953–17979 CrossRef PubMed.
  74. H. J. Monkhorst and J. D. Pack, Phys. Rev. B: Solid State, 1976, 13, 5188–5192 CrossRef.
  75. P. E. Blöchl, O. Jepsen and O. K. Andersen, Phys. Rev. B: Condens. Matter Mater. Phys., 1994, 49, 16223–16233 CrossRef.

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Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4dd00269e

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