Open Access Article
Andrea Y. Garzón-Serranoa,
Johan D. Lozanob,
Leon D. Perez
a,
César A. Sierra*a and
Mario A. Macías
*b
aGrupo de Investigación en Macromoléculas, Departamento de Química, Universidad Nacional de Colombia, Bogotá, 111321, Colombia. E-mail: casierraa@unal.edu.co
bCrystallography and Chemistry of Materials, CrisQuimMat, Department of Chemistry, Universidad de los Andes, Bogotá, 111711, Colombia. E-mail: ma.maciasl@uniandes.edu.co
First published on 19th September 2024
During attempts to synthesize zirconium-based MOFs, we have obtained a new crystal structure of the cluster with Zr6O8 core and formula unit [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·nH2O. Unlike other systems, mild conditions were employed in this case; no strong acids or hydrothermal conditions were required. The molecular assembly in the crystal is characterized by strong O–H⋯O hydrogen bonds connecting neighboring molecules, allowing the formation of a three-dimensional maze of tunnels with H2O molecules stabilizing the framework. Noteworthy, at 100 °C, the strong Zr6O8 core and the O–H⋯O hydrogen bonds help form a system where the molecular cluster is conserved, but the long-range order is lost. FT-IR, Raman, TGA, DSC, and X-ray diffraction techniques were used to characterize the title compound.
CH2) cluster treated acetylacetone.6 Similarly, mixtures of acids (RCOOH and sulfuric acid) with ZrOCl2 under hydrothermal conditions and temperatures as high as 60 °C during 24 h can lead to the formation of clusters with different ligands, as in the compounds Zr6O4(OH)4(OOCR)4(SO4)4(H2O)8 (R = H, Me, Et) and [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·2HCl·3H2O.7 On the other hand, metal–organic frameworks (MOFs) have stood out for their physicochemical properties and the wide range of possible uses. Among all the reported structures, zirconium-based MOFs (Zr-MOF) draw attention due to their stability in water, becoming materials of high interest for environmental applications.8 Sometimes, these MOFs are synthesized using modulators to improve their reproducibility, increase their crystallinity, and control the microstructure of the obtained samples.9,10 From the available diverse modulators, monocarboxylic acids have been demonstrated to be excellent candidates in the obtention of Zr-MOFs based on water synthesis.11,12 Recently, in our attempts to synthesize zirconium-based MOFs using as precursors phenolic acids as organic ligands, zirconium sulfate, water/ethanol solvents, and acetic acid as a modulator, we obtained a new crystal structure variation of [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·2HCl·3H2O with general formula [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·nH2O.7 Interestingly, this cluster is only obtained in the presence of phenolic acids, suggesting that these compounds control the pH in the reaction media to facilitate the formation of the cluster. Therefore, in this work, the synthesis and structural characterization of the cluster [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·nH2O is reported. For this purpose, TGA/DSC, FT-IR, and X-ray diffraction techniques were employed, along with computational calculations, to extract relevant data about the structural stability of the title compound.
| Crystal data | Cluster |
|---|---|
| a Solvent molecules calculated based on the procrystal electron density using the CrystalExplorer software and the CIF file. This value changes to 17 when the TGA information is considered. | |
| Chemical formulaa | C8H32O40S4Zr6, 13[H2O] |
| Mr | 1678.13 |
| Crystalline system, space group | Monoclinic, Cc |
| a, b, c (Å) | 13.9608(13), 27.9958(19), 14.7493(11) |
| α, β, γ (°) | 90, 116.436(11), 90 |
| Volume, (Å3) | 5161.9(8) |
| ρ, g cm−3 | 1.837 |
| Z | 4 |
| Temperature, (K) | 298(2) |
| Radiation type | Cu Kα |
| μ (mm−1) | 12.29 |
| Theta range for data collection | 3.873° < 2θ < 76.086° |
| Index range | −11 ≤ h ≤ 17, −30 ≤ k ≤ 35, −18 ≤ l ≤ 17 |
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| Data collection | |
| Diffractometer | SuperNova, dual, Cu at zero, atlas |
| Absorption correction | Multi-scan (CrysAlis PRO 1.171.38.43) |
| Tmin, Tmax | 0.637, 1.000 |
| No. of measured, independent, and observed reflections [I > 2σ(I)] | 13 186, 6972, 5931 |
| Rint | 0.06 |
| (Sin θ/λ)max (Å−1) | 0.630 |
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| Refinement | |
| R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.143, 1.04 |
| No. of reflections | 6972 |
| Refined parameters | 533 |
| No. of restraints | 86 |
| H-atoms treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 1.61, −1.28 |
Moreover, in the Raman spectrum, an additional band at 2940 cm−1 was assigned to the C–H stretching vibration of –CH3 in the acetate group.7 Sulfate ion vibrations compose the third zone, where the most notable band in the Raman spectrum at 1010 cm−1 is attributable to the symmetrical vibration of the SO42− group. Furthermore, three bands in IR spectra at 1120, 1050, and 990 cm−1 are also assigned to antisymmetric and symmetrical vibrations.23 Finally, the last zone corresponds to Zr–O vibrations, which can be seen at 597 cm−1 and 440 cm−1; mainly, these vibrations can be attributable to the stretching modes of Zr–O(H)–Zr and Zr–O–Zr.24
In the TGA trace (Fig. 2a), the first region corresponds to water evaporation (81.8–151.0 °C), where around 18% of the total weight loss occurs. This result correlates to the DSC curve where an endothermic (15 kJ g−1) peak appears centered at 89.0 °C, which is attributable to water evaporation. From this initial analysis, the estimation of the stoichiometric amount of water molecules in the cluster structure suggests around 17H2O molecules of crystallization. Taking arbitrarily 17 as the n value in the formula, the cluster could be written as [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·17H2O. After water loss, endothermic peaks in the DSC curve at around 144 °C (227 kJ g−1) and 196 °C (135 kJ g−1) can be assigned to probable atomic/molecular reordering (discoordination of ligands). The second and third decompositions in the TGA curve (412–453 °C) correspond to ≈17% and ≈12% of weight loss, respectively, caused by the acetate groups and μ3-OH moieties (≈17%) and two sulfate groups (≈12%), giving ≈2% and ≈6% as relative errors, respectively. However, another hypothesis seems plausible: a loss of three sulfate groups (≈17%) followed by the loss of all coordinated H2O molecules and hydroxyl groups (≈12%) with relative errors of ≈4% and ≈1%, respectively (calculated % and enthalpy values are shown in Fig. S2 and S3†). To clarify the sub-products of these decompositions, additional analysis is needed, such as TGA/MS (thermogravimetric analysis/mass spectrometry).
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| Fig. 2 (a) TGA and (b) DSC traces for [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·17H2O cluster (endo down). Details of the calculations are shown in ESI.† | ||
c2 space groups, respectively,7 leaving the title compound, [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·17H2O, as a non-reported supramolecular variation of that reported. Noteworthy, the methodology for the synthesis of the title compound was performed under mild conditions compared to the [Zr6O4(OH)4(OOCR)4(SO4)4(H2O)8]·2HCl·3H2O (R = H, Me, Et) family, where sulfuric acid and hydrothermal treatments were employed.
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| Fig. 3 Metal cluster showing (a) Zr-octahedron capped by μ3-O and μ3-OH groups, (b)–(d) coordination of carboxylate, sulfate, and H2O ligands to Zr atoms (hydrogen of water ligands are omitted), respectively, (additional ligands are omitted for clarity), and (e)–(g) whole molecule in different orientations to highlight the coordination of carboxylate, sulfate and H2O ligands to Zr atoms. The inset shows a photograph with the octahedral crystals. Fig. S1† shows ADPs using ORTEP style. | ||
Considering the results and the different synthesis conditions used, as well as the reports in the literature, this unreported supramolecular variation is possible thanks to the esterification of phenolic acids in the presence of acetic acid and a strong acid catalyst,25 such as zirconium sulfate.26,27 This is because in the presence of GA a greater amount of solid cluster (Zr/formate/sulfate) is obtained compared to PCA; indicating that the amount of OH groups present in the respective phenolic acid would be related to the yield of the cluster. Concerning the mild synthesis conditions used, it should be noted that the previously reported structure starts from zirconium chloride, which, in the presence of sulfuric acid and monocarboxylic acids, forms a stable cluster (in hydrothermal synthesis conditions), which is subsequently used as a precursor of nano ZrO2 structures. Taking into account the report by Stern et al., where it is thermodynamically demonstrated that the hexanuclear Zr6 clusters are less stable in water, requiring ligand support for stabilization (unlike the tetranuclear Zr4 clusters),28 as well as the report by Zhang et al. where the effect of sulfate anions on the crystallization of Zr oxo clusters was studied,29 the structure obtained in the present investigation was obtained under mild synthesis conditions thanks to the stabilization of sulfate and formate anions to the Zr6 cluster. The sulfate anions were provided by the metal salt (zirconium sulfate), and the esterification of the phenolic acids present in the reaction medium provided the formate anions.
Additionally, in the [Zr6O4(OH)4(OH2)8(CH3COO)4(SO4)4]·17H2O cluster, the 6 Zr atoms describe an octahedron alternatively capped by μ3-O (planar) and μ3-OH (pyramidal) groups (Fig. 3a), where a C2 point group described the molecular symmetry. The coordination geometry of Zr atoms is completed through eight oxygens to form an antiprismatic geometry. This coordination is constructed by different groups in each case. Two Zr atoms are coordinated by two carboxylate ligands, 2μ3-O, 2μ3-OH groups, and 2H2O molecules (polyhedral volumes: 18.699 and 19.013 A3). Alternatively, two Zr atoms are coordinated by 2 carboxylate ligands, 2μ3-O, 2μ3-OH groups, and 2 sulfate ligands (polyhedral volumes: 18.660 and 18.776 Å3). Thus, two Zr atoms are coordinated by two sulfate ligands, 2μ3-O, 2μ3-OH groups, and 2H2O molecules (polyhedral volumes: 18.986 and 19.164 Å3) (Fig. 3b–g).
Furthermore, the acidity of the μ3-OH groups is essential in connecting neighboring molecules in the supramolecular structure.1 O–H⋯O hydrogen bonds involving the four μ3-O-H groups (H donor) and the sulfate ligands of a neighboring molecule (H acceptor) are the most significant interactions in the crystal structure (Fig. 4a and b, Table 2). The molecular assembly through these interactions builds a three-dimensional framework that, interestingly, resembles the structure of a metal–organic framework (Fig. 4c and d).
| Compound 3a | |||||
|---|---|---|---|---|---|
| D–H⋯A | D–H | H⋯A | D⋯A | D–H⋯A | Symmetry code |
| O4–H4⋯O22 | 0.82 | 1.98 | 2.779(17) | 166 | −1/2 + x, 3/2 − y, −1/2 + z |
| O8–H8⋯O34 | 0.82 | 2.20 | 2.95(2) | 152 | x, 1 − y, 1/2 + z |
| O12–H12⋯O45 | 0.82 | 1.98 | 2.785(16) | 167 | 1/2 + x, 3/2 − y, 1/2 + z |
| O13–H13⋯O29 | 0.82 | 2.22 | 2.96(3) | 151 | x, 1 − y, −1/2 + z |
Through these short intermolecular bonds (H⋯O distances <2.3 Å), the supramolecular structure is defined by a three-dimensional maze of intersecting tunnels (Fig. 5). H2O molecules occupied these tunnels in the room temperature structure, which is corroborated in the FT-IR/Raman spectra (Fig. 1). These solvent molecules interact through additional O–H⋯O bonds with the Zr-coordinated H2O molecules and sulfate ligands, stabilizing the framework and maintaining the integrity of the tunnels. Nevertheless, due to difficulties in the refinement process related to these disordered H2O molecules, the final crystal structure was refined in a model where the PLATON/SQUEEZE tool was applied.30 Therefore, the position of the hydrogens in the final Zr-coordinated H2O molecules rise A/B-warnings in the checkcif due to possible misplacement due to the lack of solvent in the final refined model. Then, to approach the volume occupied by the solvent, calculations were performed based on the procrystal electron density using the CrystalExplorer software.17–19 Consequently, the results show that the calculated surface contact volume available to the solvent molecules is 1876.8 Å3, a value in accordance with the previous calculated using PLATON software,31 corresponding to ≈36% of the total unit cell volume.
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| Fig. 5 Visualization of the 0.002 a.u. void surface calculated using CrystalExplorer showing the tunnels where solvent H2O molecules stabilize the framework. | ||
This calculation suggests that approximately 13H2O molecules (included in the submitted CIF file to the CCDC and registered in Table 1) are present per formula unit, which is not too far from the 17H2O molecules calculated in the TGA analysis, considering the two different approaches (Fig. 5).
In summary, the crystal structure of the title compound is then formed by strong O–H⋯O hydrogen bonds involving the μ3-O-H and SO42− groups, which is complemented by weaker O–H⋯O hydrogen bonds where solvent H2O molecules stabilize the framework by interactions with the Zr-coordinated H2O and SO2− groups. CrystalExplorer Hartree–Fock level of theory; CE-HF energy models using HF/3-21G electron densities were used as an approximation to estimate the pairwise interaction energies and obtain insights about the forces acting in the framework's formation.17,18 From these calculations; we conclude that two consecutive molecules connected by strong O–H⋯O hydrogen bonds have a total pairwise interaction energy of approximately −315.2 kJ mol−1, with electrostatic, polarization, dispersion, and repulsive energies of −250.9, −119.0, −61.3, and 90.2 kJ mol−1, respectively. From this result, it is possible to infer that the molecular framework is mainly built by electrostatic forces, as shown in Fig. 6, where the energy frameworks observed along [001] and [100] directions show the formation of the tunnels.
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| Fig. 6 Energy framework diagrams for electrostatic (red) and dispersion (green) contributions to the total interaction energies (blue) observed along [001] and [100] directions. | ||
To clarify the fundamental role of H2O molecules in the supramolecular arrangement, FT-IR spectra of the sample at room temperature and treated at 100 °C were measured. Fig. 8 shows that the characteristic vibrations grouped in the four regions depicted in Fig. 1 are maintained with slight differences. There is mainly an intensity decrease in the OH-group vibration bands after thermal treatment at 100 °C due to the elimination of the H2O molecules present in the tunnels, which correlates with the TGA first weight loss.
In general, all the identified bands of the untreated sample are also visible in the sample treated at 100 °C, which suggests a conservation of the molecular integrity. However, the powder X-ray diffraction pattern (Fig. 7) of the sample treated at 100 °C indicates a loss of the original molecular periodicity. These results can be interpreted as follows: the molecular cluster is maintained after eliminating the free solvent H2O molecules in the tunnels; nevertheless, the hydrogen bond interactions of these H2O molecules with the cluster are important to keep the long-range arrangement.
In addition, we measured the FT-IR spectrum and powder X-ray diffraction pattern (ESI Fig. S4†) of the cluster sample treated at 150 °C, corresponding to the end of the first weight lost in the TGA curve. Fig. 9 shows an intensity decrease of the OH-symmetric stretching band in zone 1 and the absence of H2O bending mode around 1630 cm−1, which suggests a total loss of H2O molecules, most probably from the coordination sphere of the Zr metals. However, a main change can be observed in the sulfate zone (red region), where the three characteristic modes of SO42− vibrations transform to a broad band, which could be associated with a discoordination of these groups from the Zr atoms, leading to a decomposition of the cluster. X-ray diffractogram (ESI†) supports this hypothesis, suggesting the probable formation of Zr(CH3COO)4 and Zr3O5(SO4) according to the ICSD database. These findings favor the second thermal decomposition mechanism proposed previously, where, after the elimination of the crystallization H2O molecules, a loss of three sulfate groups (≈17%) followed by the loss of all hydroxide groups and coordinated H2O molecules (≈12%) takes place.
Footnote |
| † Electronic supplementary information (ESI) available. CCDC 2354420. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d4ra03940h |
| This journal is © The Royal Society of Chemistry 2024 |