Constantinos Varotsis*,
Charalampos Tselios,
Konstantinos A. Yiannakkos,
Charalampos Andreou,
Marios Papageorgiou
and
Antonis Nicolaides
Department of Chemical Engineering, Cyprus University of Technology, Eirinis 95, Limassol, 3041, Cyprus. E-mail: c.varotsis@cut.ac.cy; Fax: +357 25002802
First published on 22nd December 2021
The combined application of the structure sensitive techniques Fourier transform infrared μ-spectroscopy and Raman microscopy in conjunction with different approaches of laser-induced breakdown spectroscopy (LIBS) including the two-color double pulse (DP-LIBS) have been applied towards the characterization of whole ore copper-sulfide minerals. Discrete information from the surface of the whole ore minerals that lead to the establishment of infrared marker bands and from the surface of bioleached samples that allow the monitoring of jarosite and biofilm formation are provided by FTIR mapping experiments. Raman data can provide information related to the type of the mineral and of the secondary minerals formed on the surface of the ore. Of the four different LIBS approaches applied towards the characterization of the composition of the whole ore minerals, the DP-LIBS shows the highest sensitivity with increasing signals for both the Fe and Cu metals in the whole ore samples.
The (bio)-chemical oxidation of chalcopyrite [CuFeS2], chalcocite [Cu2S], idaite [Cu5FeS6] and bornite [Cu5FeS4] by microorganisms has been a subject of extensive research for the last twenty years.1–49 Oxidation of the most important Cu sulfides (covellite, chalcocite and chalcopyrite) is presented in eqn (1)–(3):
CuS(s) + Fe2(SO4)3(aq) → CuSO4(aq) + S(s) + 2FeSO4(aq) | (1) |
Cu2S(s) + Fe2(SO4)3(aq) → 2CuSO4(aq) + S(s) + 4FeSO4(aq) | (2) |
CuFeS2(s) + Fe2(SO4)3(aq) → CuSO4(aq) + 2S(s) + 5FeSO4(aq) | (3) |
The passivation of chalcopyrite [CuFeS2] is a major problem that reduces the yields from leaching and bioleaching. Passivation involves the formation of a layer of secondary minerals on minerals surface which creates a diffusion barrier to fluxes of re-actants and products. We have presented Raman and FTIR evidence toward identification of secondary minerals formed during the passivation of Cu sulfide minerals in the presence of iron and sulphur-oxidizing bacteria isolated from the mines of HCM.3,4,47 The major detectable species in the passivation layer are CuS and elemental sulphur-S0. In addition, the surface dynamics of the formation of micro-macro-colonies with variable cell density and the formation of extracellular polymeric substances toward the elucidation of the sulfur bio-oxidation and biofilm format has been reported. The Raman and FTIR data indicated the Sn2−/S0 consumption modification during biofilm evolution. This way, the role of the cell density in the primary events with the presence of S0 was determined and whether the presence of refractory sulfur species on the surface of the mineral affects biofilm formation. The constituents of EPS of the biofilms was also evaluated. Essential elucidation of the mineralogy of [CuFeS2] and its transformation is necessary to understand the mechanism of passivation. The main objective of our research has been the characterization of the mineral phases generated in the bioleaching processes and gain insights in transformation processes of these phases, as a support to understand its influence on the passivation of the process.
FTIR spectroscopy is an analytical spectroscopic method for studying subtle changes in secondary structure of proteins as it allows the analysis of chemical bonds.3,4,47,50–53 Monitoring the conformations changes of protein structures may originate from interactions with other biomaterials or inorganic matter. Such interactions are of high relevance in various physiological cellular processes such as cellular attachment in sulfide mineral surfaces during bioleaching processing.47 Laser Raman micro spectroscopy has been applied as a technique for the characterization of biomaterials and secondary minerals formed during the chalcopyrite leaching.54–56 This way, distinct information from a large sample area of a heterogeneous sample is feasible. We have recently applied these microspectroscopic approaches for probing the formation of secondary minerals from the surface of bioleached Cu-containing minerals and also establish the vibrational marker bands for monitoring the formation of different types of jarosite and of EPS.
LIBS has the capability of rapid and in situ analysis with no sample preparation required which allows measurements in the laboratory and in the field including studies in geological areas.57–62 The specific application of concurrent time resolved LIBS-Raman for monitoring the origin of mining tailings provide a new state-of-the-art approach in the field. This is important at both the level of the industrial heap bioleaching process, and more generally for the scientific community because the time-resolved approach increases the limit of detection. This is a novel approach in heap bioleaching and although it has been used by scientists in other field of biotechnology in the copper bioleaching process has not been applied, yet. LIBS employs a high-power laser beam focused onto a sample to create a plasma. A short duration laser pulse strikes the sample increasing the temperature of the sample causing the matter in the spark to be vaporized, reduced to its atomic species, and then electronically excited. Emission lines at discrete wavelengths that characterize the elements present are then resolved spectrally and temporally with a spectrometer covering part or all of the ultraviolet through near infrared range. Each element emits at different wavelengths and therefore the elements contained within a material can be characterized from the spectral peaks present. The peak intensities provide a quantitative description of the material.
The combination of LIBS-Raman and FTIR mapping techniques provides significant advantage in monitoring chemical-processes and composition because the molecular information is added to the atomic data and a more complete description is available. LIBS is more sensitive in the detection of metal elements than nonmetals. The Raman bands of some materials have well known characterized vibrational bands which can specifically identify the molecular composition or their crystals and crystal form. No reports with respect the applicability of all three techniques in the field of bio-hydrometallurgy are available. In this short review, we have extended our time-resolved vibrational approach of Raman and step-scan FTIR on biomolecules and present new results based on different approaches of LIBS to demonstrate the importance of the techniques towards our understanding the bio-hydrometallurgy dynamics of whole ore sulfide minerals.
The Raman spectrum of chalcopyrite is characterized by a weak band at 293 cm−1 which has been assigned to the symmetric anion A1 mode.21,22 The v(Cu–S) stretching vibration in the Cu/Fe/S systems, bornite, chalcocite and covellite is located in the 470–474 cm−1. Therefore, it is difficult to distinguish bornite, chalcocite and covellite based on the v(Cu–S). However, there are easily distinguishable by colour. The v(Cu–S) of Cu2S which belongs to a Cu/S system is observed at 470 cm−1 providing new information on the iron content in the Cu/Fe/S system. The v(Cu–S) of chalcocite was recently reported for the first time.4 It was previously reported that CuS2 has no Raman peaks between 200 and 500 cm−1 and thus its formation was suggested without providing evidence for its formation.21,22 The Raman peak at 474 cm−1 is the v(Cu–S), in agreement with previous results.21,22 The Raman spectra including the images can provide the necessary information for characterization of surface species/phases and spatial variations in composition of the bioleaching of chalcopyrite. Furthermore, information regarding the formation of the passivation layers in all of the above mentioned Cu/Fe/S and Cu/S systems is feasible. Fig. 4 spectra A–B depicts the 442 nm excitation Raman spectra of quartz (spectrum A), and bornite (spectrum) and in the inset the FTIR spectra of chalcopyrite (spectrum A) and idaite (spectrum B). The image of the sample (spectrum A) has some colour-characteristics of that of either covellite and or chalcocite. However, the Raman spectrum shows an intense band at 464 cm−1 (A1 mode) and a moderate at 206 cm−1 which both have been reported to originate from quartz. Spectrum B is similar to that we have reported.3,4 As observed in the inset spectrum A, which corresponds to chalcopyrite, the stronger signals could correspond to ferric sulfate at 1064 cm−1, and hydrated ferrous sulfate and copper sulfate at 968 cm−1, ferrous sulfate and hydrated ferric sulfate (1185 cm−1). The broad band at 1636 cm−1 is due to H–O–H. Spectrum B which corresponds to idaite has characteristic bands of 977 cm−1 due to hydrated ferrous sulfate and copper sulfate at 968 cm−1 and at 1048 cm−1 due to ferric sulfates. For the FeS2 samples, the main peaks correspond to hydroxyl ferric sulfate (1230 cm−1), ferric sulfate (1176 cm−1), ferric sulfate cluster (1140 cm−1), ferrous sulfate (1089 cm−1) and hydrated ferric sulfate (1020 cm−1). Non-hydrated ferric sulfates possess strong vibrations in the 1200 cm−1 range, and, as observed in Fig. 6, there is almost no existence of these vibrations in the case of idaite but in the case of chalcopyrite there is a band at 1185 cm−1.
Fig. 5 shows the Raman and FTIR spectrum of bornite [Cu5FeS4] in a period of ten months of bioleaching by A. Ferrooxidans. In a recent paper the detailed analysis and assignment of all the vibrations present in the Raman and FTIR data were reported.3,4,47 The K+ and NH4+ vibrations of jarosite is the ν3(SO42−) vibration which is located observed at 1100 cm−1 in the spectra of K+-jarosite and at 1091 cm−1 in the spectrum of NH4+-jarosite3 and the band at 474 cm−1 was assigned to ν(Cu–S) of covellite.47 Elemental sulphur and polysulfides contain S–S linkages and display the ν(S–S) and δ(S–S–S) which are characterized by equally strong intensities at 470 at 215 cm−1, respectively. The intensity of the ν(S–S)/δ(S–S–S) ratio at 470/215 = 1 has been applied used to distinguish the elemental sulphur from the other S–S and Cu–S bond containing species.3,4 In addition, all bands attributed to K+-jarosite including the ν(Fe–O) at 429 cm−1 are present.47
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Fig. 5 Panel A: 442 nm Raman excitation spectra of bioleached bornite by A. The laser power incident on the sample was 20 mW and the accumulation time was 15 minutes. Panel B: collective image of surface of bioleached bornite [Cu5FeS4] by Acidithiobacillus ferrooxidans and the FTIR spectra collected form the surface of the mineral. The area of infrared fingerprint is 0.01 mm2 with spectra resolution 4 cm−1.47 |
In the FTIR spectra shown in Fig. 5B all the characteristic bands were assigned to amide I (1645 cm−1), to biofilm formation (978–1134 cm−1) and near 1700 cm−1 to the v(CO) vibration of the O-acetyl ester bond of free EPS. The bands at 978, 1021 and 1051 cm−1 are due to carbohydrates and at 1134 cm−1 due to P
O and the band at 1171 cm−1 was attributed to Fe–O–P bonds.47
Potassium Jarosite [KFe3(SO4)2(OH)6] is common in acidic and sulfate-rich environments. Jarosite typically is formed in ferric rich, acidic (pH < 3) oxic environments and readily breaks down when removed from its stability region by presumably converting to iron(III) oxide or oxyhydroxide phases. K+-jarosite converts to goethite through the following reaction43
KFe3(SO4)2(OH)6(s) ↔ 3FeO(OH)Geothite + K+(aq) + 2SO42−(aq) + 3H+(aq) | (4) |
However, the mechanisms of this reaction, and the specific products formed have not been studied in detail. This knowledge is of profound importance in predicting geochemical reactions in metallurgical environments. Monitoring the fate of K, SO42− and Fe during K-jarosite dissolution will aid in describing the geochemical cycling of these element in ARD/AMD systems. Jarosite which is formed subsequently to the formation of goethite has a low solubility and high stability (Ksp = 10−11 and G0f = −3309.8 kJ mol−1). The formation of jarosite is also related to the redox potential of the solution. Redox potential higher than 400 mV favour Fe3+ precipitation. It has been demonstrated that Acidithiobacillus ferrooxidans is forming jarosite group minerals de-pending on the temperature, pH, aging time and dissolved oxygen (OD) levels.10,18 From the dissolution rates we can determine if K-jarosite can survive as long as the NH4+-jarosite. Jarosite in biological environments is formed from schwertmannite Fe8O8(OH)6SO4 which is substituted with NH4+/H3O+ when the temperature is increased from 36 to 45 °C. The required cations can be acquired from dissolution of minerals and from acid-neutralizing additives.
Electron scanning microscopy (SEM) images of unleached and leached chalcopyrite have been reported but it is difficult to differentiate K+-from NH4+-jarosite because jarosite morphology depends on the experimental conditions and the shape which is round for K+-jarosite and cubic for the NH4+-jarosite and size cannot be used as a tool. On the same line are the X-ray diffraction patterns which are difficult to differentiate on the basis of d-spacing. The formation of K+ and NH4+-jarosite has been observed in 35–100 mm size grains of high-grade chalcopyrite after bioleaching in laboratory studies but never observed in natural ore samples under experimental conditions that mimic chalcopyrite heap bioleaching processes at 35 °C. In addition, the communities of microorganisms (biofilms) which are embedded in a hydrogen-like matrix formed by EPS on chalcopyrite surfaces during the bioleaching process contributing in the biosynthesis of jarosite have not been reported yet. An overall equation for the dihydroxylation, dehydration and deammoniation of NH4+-jarosite in the 300–400 °C range is given by
2NH4Fe3(SO4)2(OH)6 → 7H2O + 2NH3 + 2Fe3O2.5(SO4)2 | (5) |
Fig. 6 shows the FTIR spectra and images of a bioleached area of covellite with A. ferroxidans in a two month period. The bottom spectrum is that of the first month with characteristic bands due to v1 and v3 of (SO4). In a time-period of two months the top spectrum shows variation in the frequencies of v1 and v3 demonstrating the real time changes that take time on the surface of the bioleached ore. Comparison of the images also suggest the formation of biofilm on the surface. This way we can monitor the kinetics of biofilm formation and gain knowledge of the dynamics of the surface proper-ties in the presence of microorganisms and also the time period the microorganisms are active on the surface of the ore. A detailed description of the kinetics involved in the formation of biofilm and jarosite is described in references.
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Fig. 6 The FTIR and the 100 × 100 mm FTIR spectra of chalcopyrite which showed changes of the ore over a six-month bioleached time period have been reported by our group. |
Although sulfide minerals are important sources of metals, they are potential sources of pollution. The release of sulfur through the weathering of sulfides in natural rocks or in mine wastes generates sulfuric acid, resulting in acid rock drainage or acid mine drainage (AMD). Sulfurous fumes are produced by smelting sulfide ores which react to form acid rain. Metal sulfides are very important in Marine geosciences. Therefore, it is intriguing to gain knowledge on the interactions of the most abundant sulfide mineral, FeS2 with anaerobic marine phototrophic microorganisms. Several theories have been developed following the discoveries of ocean-floor hydrothermal systems generating large volumes of sulfide minerals and associated with novel life forms and ecosystems.
Fig. 7 shows the Raman and FTIR spectrum of whole ore mineral containing FeS2 in a period of one week of interaction(s) with Erythrobacter Longus. In panel A, the in-tense Raman bands at 344 and 380 and 430 cm−1 originate from FeS2. More specifically, the 380 cm−1 band originates from the Ag in plane stretch S–S, the 344 cm−1 from the S–S out of phase Eg mode and the 430 which has been assigned to Tg coupled libration and stretch mode. The full agreement of the Raman bands of the whole ore FeS2 with those reports from pure FeS2 samples demonstrates the reliability of the Raman spectroscopy in the characterization of whole ore minerals.
In Fig. 7, panel B, The FTIR spectrum of E. Longus (spectrum A) and the 50 × 50 μm FTIR imaging spectrum of E. Longus over the one week period of interaction with the FeS2 surface (spectrum B). The FTIR spectrum of E. Longus is characteristic of the bands at 1639 and 1554 cm−1 which are assign to the amide I and amide II, respectively. There are additional bands in the 1420 and 1100 cm−1 range due to NH4+ and carbohydrates, respectively. The well separated bands at 978, 1021 and 1051 cm−1 are due to carbohydrates and at 1134 cm−1 due to PO. In spectrum B the appearance of band in the 970–1070 cm−1 indicates the presence of EPS biofilm formation. In addition, the am-ide II vibration has lost its intensity and the amide I vibration is up-shifted by 13 cm−1 indicating that the proteins of the EPS–FeS2 complex are involved in the EPS adsorption on FeS2.
LIBS is a relatively simple spectroscopic technique with various advantages that has been applied in a number of experiments and provide sustained, in situ, elemental detection in real time.57–62 In addition of having the ability to rapidly analyse the elemental composition of solids, liquids, and gases with little or no sample preparation, LIBS is one of the few techniques capable of non-contact and remote elemental analysis, making it particularly useful for analyses in extreme and hostile environments. The application of single pulse LIBS and development of dual-pulse LIBS (DP-LIBS) and resonance-enhanced LIBS for decreasing the limit of detection and im-proving reproducibility of LIBS in agricultural soil and nutrients has been applied towards establishing new methods for improving the detection limit.61,62
Fig. 8 shows large enhancement in LIBS signals for 532–1064 nm combination in collinear arrangement. For all the comparisons the 1064 nm pulse energy and the in-ternal gate delay kept constant. The spot size for the 1064 nm was approximately 120 micrometers while for the 532 nm was 0.5 mm. The time-delay between the two laser pulses was approximately td = 1–2 ns. It can be clearly seen that there is enhancement in signal intensity for the collinear DP-LIBS. For all measurements a fixed gate delay and td was used. It remains to be established whether the intensity signals depend on the gate delay and td. Several mechanisms have been reported suggesting that the increase is due to either the increase in mass ablation or reheating of the plasma plume. The mass ablation rate depends on the wavelength because the shorter wavelength provides stronger laser-target coupling due to higher critical density (ncα1/λ−2).
We have extended the single and DP-LIBS approaches and applied two additional LIBS methods using the same experimental set-up. In the third approach we have used the 532 nm pulse as a pre-pulse to generate the plasma prior to the use of the 1064 nm pulse for recording the LIBS and in the fourth approach in a similar configuration but using the 1064 nm for the pre-pulse and subsequently the 1064 nm for recording the LIBS. We have applied the four-way approach to Cu/Fe/S containing ores including chalcopyrite and idaite whole ore samples. There is a sequential signal increase in going from the single pulse (1064 nm, black line) to prepulse-LIBS (532–1064 nm, red line) to prepulse-LIBS(1064–1064 nm, blue line) and finally to collinear DP (532–1064 nm, orange line) (Fig. 9).
It is shown that this approach can achieve typical double pulse improvement in the analytical performances for elemental analysis chalcopyrite containing ores. The results show a significant increase of the intensity and repeatability of the emission signals in the double pulse configuration of both Fe and Cu contents in the chalcopyrite ore. The improvement resulting from the use of DP-LIBS was about 100% when com-pared to SP-LIBS in all cases. These results are useful in the context of studies investigating how the μ-LIBS will assist in the development of portable LIBS systems and improve the utility of this spectroscopy technique for field applications.63–68
Time-resolved Raman and TR- FTIR spectroscopies have been applied extensively in the past for the investigation of biochemical mechanisms of nitric oxide and dioxygen respiration by cytochrome oxidases, nitric oxide reductases and the interactions of microorganisms with surfaces and metals in our laboratory.22–35,69–71 The present work extends our previous investigation and the detailed analysis of the data obtained with all three techniques demonstrates the necessity for their concurrent ap-plication towards the elucidation of complex systems such whole ore minerals.
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