Open Access Article
This Open Access Article is licensed under a Creative Commons Attribution-Non Commercial 3.0 Unported Licence

Anion⋯anion interaction within Ch(CH3)X4 (Ch = S, Se, Te; X = Cl, Br, I) dimers stabilized by chalcogen bonds

Rafał Wysokiński
Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland. E-mail: rafal.wysokinski@pwr.edu.pl

Received 18th January 2022 , Accepted 29th April 2022

First published on 2nd May 2022


Abstract

In a crystal, a pair of homoanions (Te(C6H5)Cl4) are arranged in a parallel manner, close enough to interact with each other. Quantum chemical analysis indicates the existence of two strong noncovalent chalcogen bonds engaging the σ-hole of the chalcogen atoms from one unit and electron density accumulated on the Cl atom of the neighboring unit. In a solid, chalcogen bonds are supported by a multitude of HBs between interacting (Te(C6H5)Cl4) anions and the C5H5NBr+ counterions. These studies are extended to the model homodimers [(Ch(CH3)X4)]2, where Ch represents an atom of group 16 (S, Se, and Te) while X = Cl, Br, and I. In these model systems, the aromatic ring was replaced by a methyl group and the counterions were not included. The consequence of this is a different noncovalent bond network in comparison to the system in a solid (the absence of intermolecular HBs and the presence of dihalogen bonds). The tendency for more exoenergetic complexation increases in the Cl < Br < I series. The chalcogen size effect is much smaller. However, critical to the stability of this system is overcoming the Coulomb repulsion between the two monoanions. This is possible because of the polarizable environment that exists in the crystal due to the presence of counter ions.


Introduction

Noncovalent interactions are attracting increasing research attention, which is understandable because of their role in biology and medicine as well as their usefulness in technology and industry. The most intensively studied bond of this type and also historically the earliest described is the hydrogen bond.1,2 However, many studies have shown that the acceptor–donor mechanism is available for elements of many groups of the periodic table. The anisotropy of electron density and the resulting presence of electron-poor regions make molecules more sensitive to nucleophilic attack. The concept of σ-hole3–5 and π-hole6–8 distinguishes electron-deficient regions into those lying at the extension of the bond (the former) or perpendicular to the plane of the molecule (the latter). The measure of this deficit is the value of the electrostatic potential at its maximum.9–11 Typically, a decrease in electron density results in a positive value of the maximum (Vs,max) at the electrostatic potential surface. However, it has recently been shown that for an isolated Lewis acid, the sign of the potential at its maximum alone is not critical in assessing the acceptor capacity of the acid. The Lewis base approaching the acid can overcome the shielding effect of electrons at the acceptor site. In a study of neutral systems stabilized by a chalcogen bond, it was shown that the electrostatic potential calculated at the Ch⋯N bond distance is positive.12 However, donor–acceptor systems between anionic Lewis acids and anionic Lewis bases have recently gained much interest. The maxima on the surface of the electrostatic acid potential had a negative sign in the cases of MCl3 ions where M = Ca, Sr, and Ba, to give an example.13 Taking the value of interaction energy as an indicator of stability, it was shown that in the gas phase such combinations can be stable or have a metastable character.13,14 In any case, immersion of anionic systems in a polar medium results in a significant increase in dimer stability. Evidence for interactions between monoanions is also provided by crystal structures deposited with the CSD base.15 The HgCl3 monomers form polymeric structures in the solid state in which the structural distinctness of the trichloromercurate(II) subunits is preserved and quantum calculations performed for tetramers in the solid state geometry and optimized HgCl3 dimers immersed in water indicated the attractive nature of the interaction between monomers.16,17 Zierkiewicz et al. showed that attractive interactions are also possible between dinuclear anions. PdCl42− monomers interact with each other using the electron depleted region (π-hole) above the Pd atom as a nucleophilic attack site for the chlorine atom of the neighboring tetrachloropalladate(II).18 In both of the above cases, an important and even critical role is played by counterions present in the crystal network. Anion interactions supported in the solid state by the presence of counterions were the inspiration for the analysis of such interactions among elements of the 16th group of the periodic table.

Overall, the Cambridge Structural Database (CSD) identifies thirteen systems involving five valent tetrahalogenated group 16 elements in subunits with formal charge −1 linked to each other by an intermolecular contact distance less than the sum of the corresponding vdW radii. Only the tellurium atom meets these criteria, and in each of them, the Te atom is involved in unusual Te⋯X (X = F, Cl, Br, and I) interactions. Among these thirteen systems, two contain fluorine,19,20 five chlorine,21–25 two bromine,23,26 and four iodine23,27,28 atoms as ligands (Fig. S1, ESI). The intermolecular distance of Te⋯Cl and Te⋯I within the chloride or iodine complexes ranges from 3.241 to 3.619 Å (X = Cl) and from 3.827 to 3.957 Å (X = I).

In the structure of WUTJOK refcode15,25 the two mononuclear Te(C6H5)Cl4 are arranged in a way suggesting an attractive interaction stabilized by a double chalcogen bond. To the best of our knowledge, the current work discusses for the first time the experimental and theoretical aspects of an attractive interaction between two anions involving pentacoordinate chalcogen atoms.

Methods

Full optimization of Ch(CH3)X4 dimers (Ch = S, Se, Te; X = Cl, Br, I), as well as the isolated Ch(CH3)X4 monomers, were carried out in MP2/aug-cc-pVDZ.29–31 The pseudopotential aug-cc-pVDZ-PP basis set was used for thallium and iodine atoms to account for relativistic effects.32,33 The energy accuracy was related to calculations at a higher level, CCSD(T)/aug-cc-pVDZ(-PP).30,34–37 These calculations were performed as single-point calculations for systems of geometry optimized with MP2/aug-cc-pVDZ. Harmonic frequency analysis confirmed that the optimized geometries represent true minima on the potential energy surfaces without any imaginary frequencies. Calculations were performed in the gas phase and in water (ε = 78.4). The aqueous solvent was simulated with a polarizable continuum model (PCM).38 The interaction energy (Eint) of each complex was calculated as the difference between the total electron energy of the fully optimized complex and the energies of the monomers in the geometries adopted in the complex, while for the binding energy (Ebin) the difference between the energy of the complex and the doubling of the total electron energy for the corresponding monomer in its fully optimized isolated state. The basis set superposition error (BSSE) was corrected using the counterpoise procedure introduced by Boys and Bernardi.39 Because the Gaussian package does not allow calculation of BSSE corrections using the solvent model, corrections were derived from gas-phase calculations for systems in their solvent geometry. Calculations were performed using Gaussian code 16, Rev. C.01.40 The magnitude of the MEP (molecular electrostatic potential) was estimated from its extrema value at an isodensity surface of 0.001 a.u. In addition, NCI (noncovalent index)41 analysis of the reduced electron density gradient was performed using the MultiWFN program.42,43 MEP maps and NCI diagrams were visualized using the VMD program.44 The atoms-in-molecules (AIM) method was used to determine bond paths and their topological properties using the AIMAll program.45 Decomposition of interaction energies was performed using the LMOEDA46 protocol implemented in GAMESS-US software (version 2020-R2)47 with a Morokuma–Ziegler scheme46 (embedded in the ADF software).48–50 Energy barriers were found quantitatively using the QST2 method from the Synchronous Quasi-Newton (STQN) program.51 The Cambridge Structural Database (CSD)15 supported the current study by providing X-ray structures against which the systems analyzed in this work were modeled.

CSD sample

Cambridge Structural Database was screened for the presence of a structural motif wherein two anionic, pentacoordinated chalcogen atom subunits are close enough to each other so they can interact. Fig. 1 presents the alignment of Te(C6H5)Cl4 anions in the crystal structure (WUTJOK, ref. code). One chlorine atom of each subunit lies almost directly above the tellurium atom of the other monomer and the Te⋯Cl distance of 3.597 Å represents 94% of the sum of the vdW radii (3.81 Å). Analysis of the electrostatic potential distribution (MEP) around an isolated molecule can provide insight into the nature of the interaction between these subunits. Calculated for the bare isolated monomer, the maximum of this potential located over the Te atom is −62.5 kcal mol−1 which is understandable as the monomer is an anion (Fig. 2A). A clear increase in the Vs,max value is seen when the counterion (C5H5NBr+) is included. Then, for solid state geometry, the value of Vs,max at the same point increases to −0.42 kcal mol−1 (Fig. 2B).
image file: d2cp00271j-f1.tif
Fig. 1 Arrangement of Te(C6H5)Cl4 and C5H5NBr+ ions in the crystal state (WUTJOK, ref. code).

image file: d2cp00271j-f2.tif
Fig. 2 MEP of the [Te(C6H5)Cl4] monomer (A) and [Te(C6H5)Cl4]⋯C5H5NBr+ pair (B) on the 0.001 au isodensity surface. Black dot indicates Vs,max on the Te atom (σ-hole).

Insight into the energy aspects provides not only general information about the stability of the system but also, more importantly, allows estimating the importance of the individual factors defining a given interaction. The interaction energy between a pair of Te(C6H5)Cl4 units, for geometrical parameters taken from the crystal, was estimated to be +46.97 kcal mol−1. This positive value reflects the Coulombic repulsion between the two monoanions. The situation is diametrically different if one considers the counterions present in the crystal lattice. Then the calculated value of Eint changes drops to −22.84 kcal mol−1, thus the energetic benefit amounts to about 70 kcal mol−1. These quantitative changes are confirmed by the interaction energy decomposition for both systems which is presented in Table 1. The interaction energy components show a significant change in the term related to the electrostatic interaction, whose character changes from repulsive to attractive when the counterions are included. Additionally, this effect is enhanced by the increase in the stabilizing role of the dispersion and orbital interaction components. The change like the electrostatic interaction from repulsive to attractive can be attributed to the weakening of the charge on Te(C6H5)Cl4 monoanions. This is manifested by an increase in Vs,max to near zero, in the location corresponding to the σ-hole, which makes this region more sensitive to nucleophilic attack.

Table 1 EDA/BLYP-D3/ZORA/TZ2P decomposition of the interaction energy of complexes into Pauli repulsion (EPauli), electrostatic (Eelec), orbital interaction (Eoi) and dispersion (Edisp) components. All energies in kcal mol−1
E Pauli E elec E oi E disp E int
(C6H5)TeCl4 12.89 49.47 −7.57 −7.48 47.32
(C5H5NBr+)(C6H5)TeCl4 19.72 −19.61 −10.24 −12.54 −22.67


The AIM method, introduced by Bader, provides a formal definition of a chemical bond. Within this formulation, bond classification is based on the values of electron density, Laplacian of electron density, energy density, and ellipticity calculated at the bond critical point (BCP), namely, the electron density saddle point with directionality (3,−1). As can be seen, the AIM method indicates the presence of two Te⋯Cl bonds between Te(C6H5)Cl4 anions supported by a hydrogen bond system formed by C5H5NBr+ with both Te(C6H5)Cl4 monomers. The topology of the electron density distribution of the Te(C6H5)Cl4 dimer with the presence of counterions is shown in Fig. 3A. The value of electron density for the Te⋯Cl bond is 0.010 au. In conjunction with a small value of ∇2ρ and H close to zero, it creates the picture typical for noncovalent interactions according to AIM methodology.52–54


image file: d2cp00271j-f3.tif
Fig. 3 AIM diagram (A) of the [Te(C6H5)Cl4]⋯C5H5NBr+ dimer, small green dots represent bond critical points (BCPs) and the numbers are ρ values in au and NCI isosurfaces (B) (green spheres represent noncovalent interaction regions) at the RDG 0.5 a.u. isovalue.

The Te⋯Cl bonds are not the only factor responsible for the total interaction energy between the anionic subunits. There are several specific noncovalent contacts formed by the counterions present in the solid. For example, the CH and NH groups of the C5H5NBr+ counterions form H-bonds with the Cl atoms of the [Te(C6H5)Cl4] ion and each phenyl ring forms two internal CH⋯Cl bonds. The noncovalent bond energy was estimated using the relationship ½V,55 where V represents the potential energy density at the bond critical point. Relying on this correlation both bonds Te⋯Cl (ρ = 0.009 a.u.) and CH⋯Cl (ρ = 0.010 a.u.) between (Te(C6H5)Cl4)(C5H5NBr+) pairs are characterized by the similar strength: −1.51 kcal mol−1. While the NH⋯Cl (ρ = 0.018 a.u.) is the strongest (−3.45 kcal mol−1) among the internal interactions in the (Te(C6H5)Cl4)(C5H5NBr+) pair. The AIM protocol was complemented by the NCI approach, which depicts noncovalent interactions using a color scheme. The green disks in Fig. 3B are a clear picture of the main Te⋯Cl interaction, and the smaller spots correspond to the mentioned interactions involving counterions.

Theoretical models

Monomers

Each Ch(CH3)X4 (Ch = S, Se, Te; X = Cl, Br, I) unit adopts a tetragonal pyramid type geometry as shown in Fig. 4A, where the CH3 group occupies the axial positions and the four halogen atoms are in one plane with the chalcogen atom. As noted in Table 2, two of the four X atoms are nearly opposite to each other, with θ(X–Ch–X) close to 180°. The bond distance r(Ch–X) increases with the size of the Ch atom. The geometries optimized in the aqueous phase do not differ from the vacuum structures.
image file: d2cp00271j-f4.tif
Fig. 4 Structure of Ch(CH3)X4 monomers (A) and its dimers (B) (Ch = S, Se, and Te; X = Cl, Br, and I).
Table 2 Geometrical parameters (distances in angstroms, angles in degrees) of Ch(CH3)X4 (Ch = S, Se, Te; X = Cl, Br, I) monomers calculated at the MP2/aug-cc-pVDZ level of theory
Isolated molecule R(Ch–X)a ∑Cov% R(Ch–C) θ(X–Ch–X) θ(X–Ch–X)b
a In the case of complexes in solvents the M–X distance values are averages of four different Ch–X distances. b Sum of the four angles XChX around the Ch atom.
Vacuum
S(CH3)Cl4 2.353 88 1.838 90.0/179.0 360
Se(CH3)Cl4 2.427 91 1.950 90.0/177.5 360
Te(CH3)Cl4 2.556 94 2.125 89.8/172.8 359
S(CH3)Br4 2.529 89 1.843 90.0/177.8 360
Se(CH3)Br4 2.597 92 1.957 90.0/178.6 360
Te(CH3)Br4 2.721 95 2.131 89.8/173.5 359
S(CH3)I4 2.773 88 1.853 89.9/176.4 357
Se(CH3)I4 2.837 91 1.966 90.0/179.2 360
Te(CH3)I4 2.960 94 2.141 89.9/174.7 360
Water
S(CH3)Cl4 2.352 88 1.839 90.0/177.8 360
Se(CH3)Cl4 2.462 90 1.951 90.0/178.6 360
Te(CH3)Cl4 2.559 94 2.124 89.8/173.5 359
S(CH3)Br4 2.523 89 1.845 90.0/176.5 360
Se(CH3)Br4 2.594 93 1.957 90.0/179.3 360
Te(CH3)Br4 2.722 95 2.131 89.9/174.2 359
S(CH3)I4 2.766 88 1.853 89.9/175.1 360
Se(CH3)I4 2.833 91 1.967 90/178.2 360
Te(CH3)I4 2.959 94 2.141 89.9/175.4 359


The MEP of each Ch(CH3)X4 anion is characterized as containing a strongly negative region surrounding each halogen atom. The region of depleted electron density lying at the extension of the Te–C bond (green, Fig. 1A) has been designated as σ-hole. For all Ch(CH3)X4 monomers, this MEP scheme coincides with that shown in Fig. 1A. The numerical values of the MEP at maxima, Vs,max, for each anion, are collected in Table 3. They range from −77 kcal mol−1 for S(CH3)Cl4 to −51 kcal mol−1 for Te(CH3)I4 and increase as the Ch atom is changed from S to Te. The values calculated for monomers immersed in an aqueous solution are generally slightly more negative (up to 7 kcal mol−1).

Table 3 Maxima in the MEP (kcal mol−1) of Ch(CH3)X4 (Ch = S, Se, Te; X = Cl, Br, I) monomers calculated at the MP2/aug-cc-pVDZ level of theory
Isolated molecule V s,max (σ-hole, Ch atom)
Vacuum Water
S(CH3)Cl4 −76.57 −82.86
Se(CH3)Cl4 −68.77 −72.66
Te(CH3)Cl4 −60.33 −59.07
S(CH3)Br4 −72.00 −78.63
Se(CH3)Br4 −64.50 −68.80
Te(CH3)Br4 −55.93 −55.24
S(CH3)I4 −66.56 −73.70
Se(CH3)I4 −59.55 −64.69
Te(CH3)I4 −51.06 −51.32


Dimers

The structure of Ch(CH3)X4 (Ch = S, Se, Te; X = Cl, Br, I) dimers presented in Fig. 4B was fully optimized in a vacuum and a water solvent. All dimers immersed in water gain an energy advantage of 126 to 150 kcal mol−1. This decreases with an increase in both chalcogen and halogen atom size (Table S1, ESI).

The data summarized in Table 4 indicate only slight (not exceeding 0.07 Å) changes in the intramolecular Ch–X bond lengths in the complex relative to the isolated monomer. In gas, the distances between the units (Ch⋯X) are much larger than the intramolecular Ch–X distances (from 0.6 to 1.1 Å).

Table 4 Structural parameter distances (Å), angles (deg.) in Ch(CH3)X4 (Ch = S, Se, Te; X = Cl, Br, I) dimers calculated at the MP2/aug-cc-pVDZ level of theory
M–Xa M–Xb M–Xc M⋯Xb ∑vdW % θ(Ch–Xb⋯Ch) θ(Ch–Xb⋯Ch–Xb)
Vacuum
S(CH3)Cl4
Se(CH3)Cl4 2.430 2.391 2.485 3.477 96 104.6 0.08
Te(CH3)Cl4 2.561 2.540 2.597 3.645 96 104.3 0.00
S(CH3)Br4 2.531 2.496 2.573 3.376 90 98.3 0.01
Se(CH3)Br4 2.598 2.568 2.640 3.411 71 98.0 0.04
Te(CH3)Br4 2.725 2.708 2.759 3.611 94 100.1 0.03
S(CH3)I4 2.776 2.761 2.791 3.450 74 92.9 0.00
Se(CH3)I4 2.838 2.817 2.864 3.485 90 91.7 0.01
Te(CH3)I4 2.961 2.950 2.986 3.661 91 91.2 0.02
Water
S(CH3)Cl4 2.352 2.350 2.359 3.325 90 92.4 0.01
Se(CH3)Cl4 2.426 2.442 2.417 3.330 91 87.6 0.01
Te(CH3)Cl4 2.552 2.562 2.553 3.761 99 70.6 0.04
S(CH3)Br4 2.526 2.517 2.533 3.363 90 92.2 0.00
Se(CH3)Br4 2.596 2.600 2.592 3.374 92 88.5 0.01
Te(CH3)Br4 2.723 2.750 2.703 3.586 93 78.7 0.02
S(CH3)I4 2.770 2.768 2.771 3.487 89 92.1 0.02
Se(CH3)I4 2.835 2.830 2.836 3.505 91 89.3 0.02
Te(CH3)I4 2.958 2.975 2.949 3.657 91 82.1 0.00


When the dimers are immersed in water the trend for the intermolecular Ch⋯X bond lengths is preserved. The dihedral angle θ(Ch–Xb⋯Ch–Xb) values presented in the last column of Table 4 are close to zero, indicating that the two monomers are parallel to each other. Table 5 collects the calculated values of interaction energy (Eint) and binding energy (Ebin). The former is calculated as the difference between the energy of the optimized complex and the energies of the monomers in the geometry they adopt in the complex. Ebin represents the difference between the energy of the dimer and the sum of the energies of the isolated monomers in their geometry. Thus, the difference between the two represents the energy cost associated with the structural deformation of the subunits necessary to adjust for the dimer geometry. In the gas phase, all Eint and Ebin values are endothermic, indicating the metastable nature of the systems formed. The numerical values of Eint and Ebin become less positive as the halogen size increases and both are less sensitive to the chalcogen atom size.

Table 5 Interaction and binding energies (Eint, Eb in kcal mol−1) of Ch(CH3)X4 (Ch = S, Se, Te; X = Cl, Br, I) dimers calculated at the MP2/aug-cc-pVDZ and CCSD(T)/aug-cc-pVDZ level of theory
E int E bin
MP2 CCSD(T) MP2 CCSD(T)
a For water solvent, in parenthesis are given BSSE corrections calculated with the counterpoise procedure for dimers in their vacuum geometry.
Vacuum
S(CH3)Cl4
Se(CH3)Cl4 44.55 (48.09)a 46.07 (49.92) 45.35 (48.90) 46.58 (50.43)
Te(CH3)Cl4 40.04 (43.47) 41.20 (44.92) 40.71 (44.14) 41.57 (45.29)
S(CH3)Br4 41.56 (47.61) 45.28 (51.72) 41.96 (47.99) 45.44 (51.88)
Se(CH3)Br4 38.49 (45.41) 41.81 (49.16) 38.92 (45.83) 42.00 (49.35)
Te(CH3)Br4 35.01 (41.18) 37.31 (43.87) 35.43 (41.61) 37.43 (43.99)
S(CH3)I4 32.76 (41.05) 40.12 (49.03) 32.92 (41.21) 40.11 (49.02)
Se(CH3)I4 30.72 (39.56) 37.13 (46.62) 30.91 (39.75) 37.16 (46.64)
Te(CH3)I4 28.89 (37.04) 33.42 (42.19) 29.06 (37.21) 33.34 (42.11)
Water
S(CH3)Cl4 −8.84 (−5.14) −6.50 (−2.42) −8.77 (−5.07) −6.52 (−2.44)
Se(CH3)Cl4 −10.54 (−5.21) −8.25 (−2.46) −10.45 (−5.12) −8.26 (−2.47)
Te(CH3)Cl4 −10.69 (−4.13) −8.37 (−1.27) −10.54 (−3.98) −8.19 (−1.09)
S(CH3)Br4 −13.41 (−6.77) −9.18 (−2.12) −13.28 (−6.64) −9.14 (−2.07)
Se(CH3)Br4 −14.99 (−6.95) −11.06 (−2.50) −14.86 (−6.81) −11.00 (−2.45)
Te(CH3)Br4 −14.44 (−5.95) −11.33 (−2.29) −14.28 (−5.78) −11.23 (−2.19)
S(CH3)I4 −18.03 (−9.83) −10.78 (−1.97) −17.69 (−9.48) −10.53 (−1.73)
Se(CH3)I4 −19.11 (−10.40) −12.58 (−2.86) −18.91 (−9.85) −12.46 (−2.73)
Te(CH3)I4 −18.65 (−9.26) −13.54 (−3.44) −18.52 (−9.13) −13.50 (−3.40)


The nature of inter- and intra-molecular interactions was evaluated by AIM analysis. The properties of the critical points of the studied dimers are given in Table S3 (ESI). For intermolecular Ch⋯X interactions, the electron density value is in the range of 0.01 to 0.02 a.u. Which, in the context of Laplacian values of density varying from 0.02 to 0.04 a.u. signposts the presence of noncovalent interactions of moderate strength between the subunits. The same analysis for complexes immersed in water showed that these values remain almost unchanged.

In our previous work14 where we considered anion-anion interactions in systems containing an atom of group 12 of the periodic table and the corresponding BCP parameters of the BCPs in aqueous solvent took similar values.

Replacement of the benzene ring with a CH3 group in model systems results in the appearance of X⋯X dihalogen bonds, as indicated by both AIM and NCI diagrams (Fig. 5). In a vacuum, the ρ(X⋯X) value in BCPs decreases slightly with Ch size and increases with the size of X. Immersion of the systems in water results in an increase in the value of ρ(X⋯X). For X = Br, I the X⋯X interaction strength, expressed by the magnitude of the electron density potential energy (V) in BCP, is several times (3.5 to 7, Table S3, ESI) smaller than the Ch⋯X bonds. The AIM diagram for Te(CH3)Cl4 (water) is somewhat more complex. In addition to the two Cl⋯Cl bonds (ρ = 0.006 a.u.), the four Ch⋯Cl bonds (ρ = 0.008 a.u.) are present, and also the Te⋯Te dichalcogen contact (ρ = 0.009 a.u.) is indicated. For both of the latter two, the V value is 0.004 a.u.


image file: d2cp00271j-f5.tif
Fig. 5 AIM diagram (A) of the Se(CH3)Br4 dimer, small green dots represent bond critical points (BCPs) and the numbers are ρ values in au, and NCI isosurfaces (B) (green spheres represent noncovalent interaction regions) at the RDG 0.5 a.u. isovalue.

The interaction energy distribution of each complex illustrates the mixture of different forces, the resultant of which leads to bond formation. As can be seen in Tables 6 and 7 in the gas phase, the electrostatic component is positive and thus has a destabilizing effect on the complexes. This is understandable since each interacting monomer has a formal negative charge. As the size of the substituted halogen increases, the value of Coulomb repulsion decreases, and the effect of Pauli repulsion on reducing the stability of the system increases. There is no change in the proportions of the stabilizing term of the system, the dispersion and polarization forces, which are about 70% and 30% of total attractive interaction, respectively. The ADF-EDA scheme used for Se(CH3)X4 dimers (X = Cl, Br, I) in the gas phase estimates almost equal contributions of the dispersion and orbital interaction terms. The decomposition of interaction energy components is completely different when the systems are immersed in a water solvent. The destabilizing effect of the electrostatic component increases about three times, while the value of the Pauli repulsion practically remains unchanged. As shown in Table 6, placing the dimer in water causes a sharp increase in the polarization on the stability of the systems and a relatively small increase of the dispersion contribution. The polarization term accounts for about 90% of the sum of Epol and Edisp, suggesting that it plays a key role in overcoming the Coulomb repulsion, which allows Eint to reach exoenergetic values. The NBO methodology offers a useful means to analyze the interaction between orbitals. The sums of the second-order interaction energies E(2) of the interactions between the lone electron pair of nitrogen atoms LP(X) (X = Cl, Br, I) and the σ*(Ch–C) as well as σ*(Ch–X) anti-bonding orbitals are collected in Table 8. One can observe similarities between the NBO quantities and the interaction energies in Table 5. First, for the (CH3)SeX4 domains, the NBO parameters reflect an energy ordering I > Br > Cl consistent with changes in Eint. NBO data are also parallel with the interaction energies for dimers immersed in water (Fig. 6).

Table 6 LMOEDA/MP2/aug-cc-pVDZ decomposition of the interaction energy of complexes into electrostatic (Ees), repulsion (EPauli), polarization (Epol) and dispersion (Edisp) components. All quantities in kcal mol−1
E es E Pauli E pol %b E disp % E int
a E Pauli = ∑(Eex + Erep). b Percentage contribution to total attractive interactions (Epol + Edisp).
Vacuum
Se(CH3)Cl4 51.98 9.40 −4.44 33 −8.91 67 48.02
Se(CH3)Br4 47.54 18.43 −6.15 30 −14.36 70 45.46
Se(CH3)I4 40.62 30.20 −8.54 27 −22.53 73 39.75
Water
Se(CH3)Cl4 161.44 14.94 −170.10 93 −12.53 7 −6.26
Se(CH3)Br4 148.31 21.19 −160.87 91 −16.61 9 −7.97
Se(CH3)I4 131.34 28.93 −148.46 87 −22.67 13 −10.87


Table 7 EDA/BLYP-D3/ZORA/TZ2P decomposition of the interaction energy of complexes into Pauli repulsion (EPauli), electrostatic (Eelec), orbital interaction (Eoi) and dispersion (Edisp) components. All energies in kcal mol−1
E Pauli E elec E oi %a E disp % E int
a Percentage contribution to total attractive interactions (Eoi + Edisp).
Se(CH3)Cl4 10.13 51.31 −6.05 50 −6.05 50 49.34
Se(CH3)Br4 19.29 46.45 −9.90 51 −9.62 49 46.22
Se(CH3)I4 33.35 37.46 −13.12 47 −15.07 53 42.62


Table 8 NBO results, the second-order energies (E2) values of interacted orbital in kcal mol−1
LP (X) → σ*(Se–C) LP (Cl) → σ*(Se–X) Σ
Vacuum
Se(CH3)Cl4 7.08 0.36 7.44
Se(CH3)Br4 13.90 0.64 14.54
Se(CH3)I4 19.45 1.68 21.13
Water
Se(CH3)Cl4 11.00 0.74 11.74
Se(CH3)Br4 15.24 1.10 16.34
Se(CH3)I4 18.46 1.46 19.92



image file: d2cp00271j-f6.tif
Fig. 6 The isosurface (on the 0.001 isovalue) of two of the interacting orbitals [LP(Br) → σ*(Se–C)] for the Se(CH3)Br4 dimer; (blue, LP(Br) orbital; orange, σ*(Se–C)).

Discussion

The conventional concept of σ- and π-holes associated with electron density anisotropy around the molecule is in many cases sufficient for qualitative and quantitative description of forming systems stabilized by noncovalent bonding. It works well for neutral monomers, where the reduction of electron density in the hole regions is so large that the maxima on the electrostatic potential isosurface take positive values (Vs,max > 0). Sometimes, however, despite the negative value of Vs,max (shallow hole) stable bonds are also formed. This is possible when the nucleophile can overcome the shielding effect of the valence electrons of the Lewis acid. In this case, bond formation occurs at a distance where an attractive interaction is already possible and explainable based on the electrostatic concept of holes. The calculated value of the maximum of the electrostatic potential at a particular distance from the electrophile nucleus then has a positive value.12

The situation becomes more complex in the case of anion⋯anion interactions. In negatively charged monomers, the electron density anisotropy rarely results in a positive Vs,max in isolated LA.13 It is also shown that the sign of the MEP maximum in LA can change due to deformation of its geometry occurring during complexation.

A typical feature of all previously studied systems is their metastability in the gas phase. This is worth emphasizing, even when the Coulomb interaction has an attractive character. Systems of this type are characterized by the presence of a dissociation barrier.13,14,56 It was shown that this barrier for CN-⋯M (M = Zn, Cd, Hg) systems is about 25 kcal mol−1, slightly higher than the barrier of 20 kcal mol−1 for M as the atoms of the 2nd group. As it seems, this barrier is mainly related to the geometrical deformation of the subunits. For the systems presented in this work, in the absence of deformation, the barrier is very small 0.1 kcal mol−1 (Se(CH3)Cl4 dimer, Fig. 7).


image file: d2cp00271j-f7.tif
Fig. 7 Dissociation profile of the Se(CH3)Cl4 dimer in a vacuum.

The results presented in this paper demonstrate the metastability of chalcogen complexes in the gas phase. When immersed in an aqueous medium, the interaction energies and binding energies adopt exoenergic values thus there is no barrier to dissociation for them. Similar results were also obtained at the CCSD(T)/aug-cc-pVDZ level (Table 5).

The results obtained for the model systems are qualitatively consistent with the values obtained for the dimer in the crystal geometry. For the bare dimer, the Eint calculated in the gas phase is endoenergetic. Electrostatics is an element that hinders the stabilization of the complex. When one considers the counterions present in the crystal lattice it results in a change of interaction character. The performed decomposition of the interaction energy shows the reversal of the role of the Coulomb interaction from repulsive to attractive, which is mainly due to the compensation of the charge of the anion Te(C6H5)Cl4 by C5H5NBr+. Thus, the role of the counterion can be dualistic: it compensates charge and locks the anionic subunits.

Interactions of anions in the solid have recently been indicated for monoanions16 (HgCl3) and also for dianions18 (PdCl42−). In the solid, the interaction of anionic subunits is stabilized by an additional network of secondary hydrogen bonds. The observations were also supported by quantum chemical calculations in the gas phase and polar solvents. The use of water as a polar medium for the model systems studied does not provide charge compensation. However, the polar medium facilitates electron density polarization by enhancing the ion interaction, which in the case of monoanions is associated with an increase in electrostatic repulsion and finally results in the increased stability of the systems studied.

Similar results were obtained for other ionic pairs, both cationic and anionic, that were identified in the gas phase.57 In subsequent studies, it was found that immersion of such systems in a polar medium resulted in a marked boost in their stability.58,59

There are also many reports in the literature regarding possible anion-anion interactions in the context of hydrogen bonding. Metastable dication and dianion complexes stabilized by HBs have been identified.60 HB anion–anion bonding has been documented in the crystal structure,61 and CSD62 analysis has identified protonated pyridine–boronic acid dimers in the solid phase. Quantum chemical calculations showed that the metastable complex gains stability when placed in a dielectric medium.

For the cationic systems, it was shown that increasing the size of the cation makes it easier for them to disperse the positive charge causing them to be more stable than the separated63 monomers. Studies of a number of cationic complexes supported by HB bonds show the importance of the environment for the stability of such systems.64

Conclusions

The current work provides clear crystallographic and theoretical evidence for an attractive interaction between two monoanions of pentacoordinate chalcogen atoms. The main cause of this attraction is the σ-hole bond involving charge transfer from lone pairs of halogens to an atom of the 16th group of the periodic table in the context of the monoanion pair Ch(C6H5)X4 (Ch = S, Se, and Te; X = Cl, Br, and I). Tandem with counterions in the crystal lattice results in a stable system with a reversal of the role of electrostatics from repulsive to attractive.

In dimer model studies, it was shown that Ch(CH3)X4 ions can interact with each other despite their strong Coulomb repulsion. Each Ch(CH3)X4 monomer retains its structural distinctness and the system is stabilized by a pair of noncovalent Ch⋯X chalcogen bonds. The structure arranged in this manner does not represent a stable minimum, in the gas phase, but forms a metastable system. However, the interaction energies are consistently exothermic in aqueous solution. There is a tendency towards more exothermic complexation for larger halogen atoms, and the effect of the size of chalcogen atoms is less. The interactions in the gas phase have a positive electrostatic component. The dispersion and polarization terms also play a stabilizing role. On the other hand, polarization is the dominant factor in the solvent, where the electrostatic interaction is still repulsive.

Conflicts of interest

There are no conflicts to declare.

Acknowledgements

This work was financed in part by a statutory activity subsidy from the Polish Ministry of Science and Higher Education for the Faculty of Chemistry of Wroclaw University of Science and Technology. A generous allotment of computer time from the Wroclaw Supercomputer and Networking Center is acknowledged.

References

  1. S. Scheiner, Struct. Chem., 2019, 30, 1119–1128 CrossRef CAS.
  2. S. Scheiner, J. Indian I Sci., 2020, 100, 61–76 CrossRef.
  3. P. Politzer and J. S. Murray, J. Comput. Chem., 2018, 39, 464–471 CrossRef CAS PubMed.
  4. A. Bauza, T. J. Mooibroek and A. Frontera, ChemPhysChem, 2015, 16, 2496–2517 CrossRef CAS PubMed.
  5. T. Clark, J. S. Murray and P. Politzer, ChemPhysChem, 2018, 19, 3044–3049 CrossRef CAS PubMed.
  6. P. Politzer, P. Lane, M. C. Concha, Y. G. Ma and J. S. Murray, J. Mol. Model., 2007, 13, 305–311 CrossRef CAS PubMed.
  7. J. S. Murray, P. Lane and P. Politzer, Int. J. Quantum Chem., 2007, 107, 2286–2292 CrossRef CAS.
  8. P. Politzer, J. S. Murray and T. Clark, Phys. Chem. Chem. Phys., 2021, 23, 16458–16468 RSC.
  9. T. Clark, M. Hennemann, J. S. Murray and P. Politzer, J. Mol. Model., 2007, 13, 291–296 CrossRef CAS PubMed.
  10. J. S. Murray and P. Politzer, Wiley Interdiscip. Rev.: Comput. Mol. Sci., 2011, 1, 153–163 CAS.
  11. J. S. Murray, P. Lane and P. Politzer, J. Mol. Model., 2009, 15, 723–729 CrossRef CAS PubMed.
  12. R. Wysokinski, W. Zierkiewicz, M. Michalczyk and S. Scheiner, Molecules, 2021, 26, 6394–6411 CrossRef CAS PubMed.
  13. W. Zierkiewicz, R. Wysokinski, M. Michalczyk and S. Scheiner, ChemPhysChem, 2020, 21, 870–877 CrossRef CAS PubMed.
  14. R. Wysokinski, W. Zierkiewicz, M. Michalczyk and S. Scheiner, ChemPhysChem, 2020, 21, 1119–1125 CrossRef CAS PubMed.
  15. C. R. Groom, I. J. Bruno, M. P. Lightfoot and S. C. Ward, Acta Crystallogr., Sect. B: Struct. Sci., Cryst. Eng. Mater., 2016, 72, 171–179 CrossRef CAS PubMed.
  16. R. Wysokinski, W. Zierkiewicz, M. Michalczyk and S. Scheiner, ChemPhysChem, 2021, 22, 818–821 CrossRef CAS PubMed.
  17. R. Wysokinski, W. Zierkiewicz, M. Michalczyk and S. Scheiner, Phys. Chem. Chem. Phys., 2021, 23, 13853–13861 RSC.
  18. W. Zierkiewicz, M. Michalczyk, T. Maris, R. Wysokinski and S. Scheiner, Chem. Commun., 2021, 57, 13305–13308 RSC.
  19. A. R. Mahjoub, D. Leopold and K. Seppelt, Z. Anorg. Allg. Chem., 1992, 618, 83–88 CrossRef CAS.
  20. A. Haas and M. Pryka, J. Chem. Soc., Chem. Commun., 1993, 993–994,  10.1039/c39930000993.
  21. M. A. James, O. Knop and T. S. Cameron, Can. J. Chem., 1992, 70, 1795–1821 CrossRef CAS.
  22. J. Bergman, J. Siden and K. Maartmannmoe, Tetrahedron, 1984, 40, 1607–1610 CrossRef CAS.
  23. S. S. Dos Santos, E. S. Lang and G. M. de Oliveira, J. Organomet. Chem., 2007, 692, 3081–3088 CrossRef.
  24. R. K. Chadha, J. E. Drake and M. A. Khan, Can. J. Chem., 1984, 62, 32–35 CrossRef CAS.
  25. E. S. Lang, R. M. Fernandes, C. Peppe, R. A. Burrow and E. M. Vazquez-Lopez, Z. Anorg. Allg. Chem., 2003, 629, 215–218 CrossRef CAS.
  26. G. A. Casagrande, C. Raminelli, E. S. Lang and S. D. Lemos, Inorg. Chim. Acta, 2011, 365, 492–495 CrossRef CAS.
  27. F. Einstein, J. Trotter and C. Williston, J. Chem. Soc. A, 1967, 2018–2023 RSC.
  28. E. Faoro, G. M. de Oliveira, E. S. Lang and C. B. Pereira, J. Organomet. Chem., 2011, 696, 807–812 CrossRef CAS.
  29. T. H. Dunning, J. Chem. Phys., 1989, 90, 1007–1023 CrossRef CAS.
  30. D. E. Woon and T. H. Dunning, J. Chem. Phys., 1993, 98, 1358–1371 CrossRef CAS.
  31. A. K. Wilson, D. E. Woon, K. A. Peterson and T. H. Dunning, J. Chem. Phys., 1999, 110, 7667–7676 CrossRef CAS.
  32. K. A. Peterson, D. Figgen, E. Goll, H. Stoll and M. Dolg, J. Chem. Phys., 2003, 119, 11113–11123 CrossRef CAS.
  33. K. A. Peterson, B. C. Shepler, D. Figgen and H. Stoll, J. Phys. Chem. A, 2006, 110, 13877–13883 CrossRef CAS PubMed.
  34. K. A. Peterson and C. Puzzarini, Theor. Chem. Acc., 2005, 114, 283–296 Search PubMed.
  35. D. Figgen, G. Rauhut, M. Dolg and H. Stoll, Chem. Phys., 2005, 311, 227–244 CrossRef CAS.
  36. J. A. Pople, M. Headgordon and K. Raghavachari, J. Chem. Phys., 1987, 87, 5968–5975 CrossRef CAS.
  37. K. Raghavachari, G. W. Trucks, J. A. Pople and M. Headgordon, Chem. Phys. Lett., 1989, 157, 479–483 CrossRef CAS.
  38. J. Tomasi, B. Mennucci and R. Cammi, Chem. Rev., 2005, 105, 2999–3093 CrossRef CAS PubMed.
  39. S. F. Boys and F. Bernardi, Mol. Phys., 1970, 19, 553–566 CrossRef CAS.
  40. M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, G. Scalmani, V. Barone, G. A. Petersson, H. Nakatsuji, X. Li, M. Caricato, A. V. Marenich, J. Bloino, B. G. Janesko, R. Gomperts, B. Mennucci, H. P. Hratchian, J. V. Ortiz, A. F. Izmaylov, J. L. Sonnenberg, D. Williams-Young, F. Ding, F. Lipparini, F. Egidi, J. Goings, B. Peng, A. Petrone, T. Henderson, D. Ranasinghe, V. G. Zakrzewski, J. Gao, N. Rega, G. Zheng, W. Liang, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, K. Throssell, J. A. Montgomery Jr., J. E. Peralta, F. Ogliaro, M. J. Bearpark, J. J. Heyd, E. N. Brothers, K. N. Kudin, V. N. Staroverov, T. A. Keith, R. Kobayashi, J. Normand, K. Raghavachari, A. P. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, J. M. Millam, M. Klene, C. Adamo, R. Cammi, J. W. Ochterski, R. L. Martin, K. Morokuma, O. Farkas, J. B. Foresman and D. J. Fox, Gaussian 16 Rev. C.01, 2016 Search PubMed.
  41. E. R. Johnson, S. Keinan, P. Mori-Sanchez, J. Contreras-Garcia, A. J. Cohen and W. T. Yang, J. Am. Chem. Soc., 2010, 132, 6498–6506 CrossRef CAS PubMed.
  42. T. Lu and F. W. Chen, J. Comput. Chem., 2012, 33, 580–592 CrossRef CAS PubMed.
  43. T. Lu and F. W. Chen, J. Mol. Graph. Model., 2012, 38, 314–323 CrossRef CAS PubMed.
  44. W. Humphrey, A. Dalke and K. Schulten, J. Mol. Graph. Model., 1996, 14, 33–38 CrossRef CAS.
  45. T. A. Keith in AIMAll (Version 19.10.12) TK Gristmill Software, Overland Park KS, USA, 2019 (aim.tkgristmill.com) Search PubMed.
  46. P. Su and H. Li, J. Chem. Phys., 2009, 131, 014102 CrossRef PubMed.
  47. G. M.-J. Barca, C. Bertoni, L. Carrington, D. Datta, N. De Silva, J. E. Deustua, D. G. Fedorov, J. R. Gour, A. O. Gunina, E. Guidez, T. Harville, S. Irle, J. Ivanic, K. Kowalski, S. S. Leang, H. Li, W. Li, J. J. Lutz, I. Magoulas, J. Mato, V. Mironov, H. Nakata, B. Q. Pham, P. Piecuch, D. Poole, S. R. Pruitt, A. P. Rendell, L. B. Roskop, K. Ruedenberg, T. Sattasathuchana, M. W. Schmidt, J. Shen, L. Slipchenko, M. Sosonkina, V. Sundriyal, A. Tiwari, J. L. Galvez Vallejo, B. Westheimer, M. Wloch, P. Xu, F. Zahariev and M. S. Gordon, J. Chem. Phys., 2020, 152, 154102 CrossRef CAS PubMed.
  48. G. te Velde, F. M. Bickelhaupt, E. J. Baerends, C. F. Guerra, S. J.-A. Van Gisbergen, J. G. Snijders and T. Ziegler, J. Comput. Chem., 2001, 22, 931–967 CrossRef CAS.
  49. O. A. Stasyuk, R. Sedlak, C. F. Guerra and P. Hobza, J. Chem. Theory Comput., 2018, 14, 3440–3450 CrossRef CAS PubMed.
  50. ADF2014, SCM, Theoretical Chemistry, Amsterdam, The Netherlands, 2014 Search PubMed.
  51. C. Y. Peng and H. B. Schlegel, Isr. J. Chem., 1993, 33, 449–454 CrossRef CAS.
  52. R. Bader, Atoms In Molecules, A Quantum Theory, Clarendon Press, Oxford, 1990 Search PubMed.
  53. R. F.-W. Bader, J. Phys. Chem. A, 1998, 102, 7314–7323 CrossRef CAS.
  54. F. Cortes-Guzman and R. F.-W. Bader, Coord. Chem. Rev., 2005, 249, 633–662 CrossRef CAS.
  55. E. Espinosa, I. Alkorta, J. Elguero and E. Molins, J. Chem. Phys., 2002, 117, 5529–5542 CrossRef CAS.
  56. S. Scheiner, R. Wysokinski, M. Michalczyk and W. Zierkiewicz, J. Phys. Chem. A, 2020, 124, 4998–5006 CrossRef CAS PubMed.
  57. F. Weinhold and R. A. Klein, Angew. Chem., Int. Ed., 2014, 53, 11214–11217 CrossRef CAS PubMed.
  58. I. Mata, E. Molins, I. Alkorta and E. Espinosa, J. Phys. Chem. A, 2015, 119, 183–194 CrossRef CAS PubMed.
  59. Y. Yang, Z. Xu, Z. Zhang, Z. Yang, Y. Liu, J. Wang, T. Cai, S. Li, K. Chen, J. Shi and W. Zhu, J. Phys. Chem. B, 2015, 119, 11988–11997 CrossRef CAS PubMed.
  60. I. Alkorta, I. Mata, E. Molins and E. Espinosa, Chem. – Eur. J., 2016, 22, 9226–9234 CrossRef CAS PubMed.
  61. R. Barbas, R. Prohens, A. Bauza, A. Franconetti and A. Frontera, Chem. Commun., 2019, 55, 115–118 RSC.
  62. I. Iribarren, M. M. Montero-Campillo, I. Alkorta, J. Elguero and D. Quinonero, Phys. Chem. Chem. Phys., 2019, 21, 5796–5802 RSC.
  63. T. Niemann, A. Strate, R. Ludwig, H. J. Zeng, F. S. Menges and M. A. Johnson, Phys. Chem. Chem. Phys., 2019, 21, 18092–18098 RSC.
  64. S. G. Dash and T. S. Thakur, Phys. Chem. Chem. Phys., 2019, 21, 20647–20660 RSC.

Footnote

Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d2cp00271j

This journal is © the Owner Societies 2022
Click here to see how this site uses Cookies. View our privacy policy here.