A. G. Iriarte*a,
W. J. Peláeza,
F. Fülöpb and
G. A. Argüelloa
aINFIQC – Departamento de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria, 5000 Córdoba, República Argentina. E-mail: airiarte@fcq.unc.edu.ar
bInstitute of Pharmaceutical Chemistry, University of Szeged, Eötvös Utca 6, H-6720 Szeged, Hungary
First published on 29th April 2015
FT-Raman and FT-IR spectra of solid cis- and trans-2-thioxohexahydroquinazolin-4(1H)-one are reported from 4000 to 200 cm−1. The molecular geometry, Wiberg Index, NBO analysis and vibrational wavenumbers in the ground state have been calculated using a density functional method (B3LYP) with 6-31+G** and 6-311+G** basis set. Both compounds are stable as dimers in the solid phase, possessing C2 symmetry. The scaled theoretical wavenumbers showed very good agreement with the experimental values. This work contributes to the knowledge of important data which are rather scarce for quinazolinones.
Recently, we have synthesized and analyzed 5-benzyl-3-phenyl-2-thioxoimidazolidin-4-one (BPT) and its dehydrogenated derivative compounds, phenylmethylene-3-phenyl-2-thioxoimidazolidin-4-one (PPT) in both solid and gas phases.6 These species possess the 5-arylmethylene-2-thioxoimidazolidin-4-one nucleus, which has demonstrated to be important as antimycobacterials,7 immunomodulators,8 anticonvulsivants9 and antifungals.10 Particularly, PPT was obtained in crystal form, thus X-ray diffraction analysis could be done to conclude that a substantial part of the molecule is planar, excluding the aromatic ring attached to the N3 atom. This planar conformation was attributed to the conjugation of the heterocycle with the aromatic ring at the position of the methylene moiety. The intramolecular distance N–H⋯S indicates hydrogen bonding, linking the molecules into dimers [N–H⋯S = 2.583(18)Å].6
In recent times, we have also studied the thermal dissociation of a series of hexahydroquinazoline-4(1H)-one compounds using flash vacuum pyrolysis (FVP) techniques,3 where the thermal reaction occurs through a four-center transition state yielding isothiocyanates as products. In a latter study,11 we have also dealt with the analysis of the specific forms that the cis and trans 2-thioxo-hexahydroquinazolin-4(1H)-one molecules adopt in the gas phase, in order to have a deeper insight into this process. Two tautomers were found in the gas (NH and SH forms), with the equilibrium shifted to the NH one. Since the energy difference between them is around 12 kcal mol−1 – in the solid at room temperature – only the NH form should be expected. Nevertheless, the reaction in gas phase takes place from the SH tautomer.
As we have already analyzed the entire energetic of the mechanism of thermal decomposition,11 we are now interested in describing ways to correlate the reactivity of the compounds in the gas phase with variables experimentally observed (such as the vibrational spectra of the solid), mainly considering that the acquisition of the infrared or Raman spectra of the SH conformers in the gas phase could be a very difficult task.
Thus, we report here a comprehensive analysis of the Raman and IR spectra of 2-thioxohexahydroquinazolin-4(1H)-one, complemented with structural parameters and calculus of electronic delocalizations.
Both dimers belong to the C2 symmetry group, thus their normal modes can be split up in two blocks (A and B). 186 normal modes of vibration are expected, 91 as A while 89 modes belong to the B block (all of them active in both infrared and Raman).
The observed bands with their relative intensities, scaled wavenumbers and assignments are given in Table S1 (ESI†). For a visual comparison, the experimental and simulated FT-IR and FT-Raman spectra are presented in Fig. 2.
For both cis and trans NH tautomers, the calculus predicts for the Raman spectra: 3245 cm−1 (block B) and 3220 cm−1 (A block) (attributed to the signals located at 3165 cm−1), for the cis NH; and 3257 cm−1 (B block) and 3235 cm−1 (A block), assigned to the band at 3178 cm−1 for trans NH.
The number of infrared signals in this region is higher than the expected. This fact can be explained through the Fermi resonance, which appears when fundamental vibrational levels lie close in energy to an overtone or a combination level of the same symmetry giving new signals. These new peaks are observed with their spectral intensities as a combination of the corresponding fundamentals.21 In several cases,19,20,22–24 this effect is enough to explain the experimental/calculated spectral differences, but when the molecule shares both N–H and C–H groups, the bands attributed to the Fermi effect appear in the 3650–3300 cm−1 region while in the Raman spectra, they are observable as broad low intensity signals (centered at 3161 and 3184 cm−1, for cis and trans NH tautomers, respectively).25,26
O vibrations
O stretching of 1-Ac-5-BTH (which forms an infinite chain in the crystal), was attributed to the band at 1747 and 1756 cm−1 in the infrared and Raman spectra, respectively. In this case, it was proved that the oxygen atom participates actively determining the intermolecular bonds.
On the other hand, 1-acetyl-2-thiohydantoine,27 can be either found as a trimer (called TA) or tetramer (called TB) in the solid. For TA, the carbonyl stretching appears at 1740 and 1747 cm−1 (IR and Raman, respectively), while for TB, this mode is assigned to the band at 1666 and 1674 cm−1 (Raman and infrared, respectively). For this species, the oxygen also participates in an H-bridge.
In the case of PPT,6 it was determined that the molecule is a dimer in the solid, linked only by N–S⋯H interactions, which means that there are not O⋯H bridges present in the crystal. For this compound, the signal at 1743 cm−1 in the infrared spectra is assigned to the C
O stretching vibration.
With this in mind, the carbonyl stretching for the cis NH tautomer was assigned to the sharp signal in the infrared at 1742 cm−1 and at 1732 cm−1 in the Raman; and at 1719 cm−1 (IR) and 1723 cm−1 (Ra) for the trans one. At this point, it should be important to recall our assumption about the hexahydroquinazolinones as dimer in the solid, with both monomers connected to form cyclic dimers via the hydrogen bonds of the thioamide moiety solely.6 In order to rule out any other spatial arrangement, i.e. structures with the oxygen atom forming hydrogen bonds, DFT calculations were performed proposing a dimer with both S⋯H/O⋯H bonds. The results show that the carbonyl stretching band is shifted down for about 40 cm−1 approximately. These results are in disagreement with the experimental evidence, thus confirming our assumption of the dimers linked by S⋯H interactions only.
S vibrations
S band also depends on the different forms in which the thiohydantoines crystallize, because there could exist a variable number of H-bridges in which the sulfur atom participates, causing that the frequency of vibration falls into a wide range of wavenumbers. For example, 1-acetyl-2-thiohydantoine27 is a polymorph, and the stretching band is located at 1039 and 1037 cm−1 (IR and Ra, respectively) for TA, and at 1040 and 1033 cm−1 (IR and Ra, respectively) for TB. In the case of 2-thiohydantoine, it is observed at 1156 and 1158 cm−1 (IR and Ra, respectively) for the trimer and at 1165 cm−1 for the tetramer (Raman only).28 The PPT molecule is the one with both C
S⋯H interactions, analogous to the hexahydroquinazolinones under study. The stretching mode of vibration was assigned at 1251 cm−1 in the IR spectrum, and it is predicted at 1247 (B block) and 1243 cm−1 (A block), according to the B3LYP/6-31+(d,p) method. In all the cited cases, it was observed a very strong coupling with those movements involving C and N atoms. In our case, this normal mode is attributed to the bands located at 1237 and 1242 cm−1 (for cis NH, infrared and Raman, respectively) and 1225 cm−1 (both, infrared and Raman) for trans NH. It is worth to mention that the coupling with C–N stretching is also observed.
, (with k = force constant; μ = reduced mass), it is possible to obtain valuable information about bond strengths by comparing the frequencies of the modes of vibration. For the title compounds, the C2–N3 bond in both cis and trans conformers are determinant in the thermal reaction; hence, the analysis of this mode is the key to understand the whole process to obtain the corresponding isothiocyanates.3,11 Considering that he reduced mass of the C2–N3 stretching vibration is the same in both cases, the strength of the bond only depends on the force constant (k), thus it is strongly affected by electronic interactions.
The clue in the thermal reaction (FVP) is the rupture of the C2–N3 bond to produce isothiocyanates, which takes place at different temperatures depending on the conformation (cis or trans) of the starting reagent (Fig. S1, ESI†). For that reason, our efforts are focused upon elucidating the relationship between geometric parameters/electronic distributions and the lability of the mentioned bond. The analysis of the normal mode of vibration is an effective means to carry out this task. According to the calculus, the C2–N3 stretching is strongly coupled with the N1–C2 stretching, determining two (symmetric and antisymmetric) vibrations for both cis and trans NH tautomers (both symmetric and antisymmetric modes of vibration are highlighted in Table S1, in the ESI†). The N1–C2–N3 antisymmetric stretching appears at higher wavenumbers (200 cm−1 approximately) than the symmetric one in both cis and trans tautomers. In the cases of the cis NH, the antisymmetric stretching (νa) was experimentally observed at 1392 cm−1 in both infrared and Raman spectra; while the symmetric (νs) was assigned to the bands at 1237 (IR) and 1242 (Raman) cm−1. The calculus predict the location of νa at 1415 cm−1 (A block) and 1398 cm−1 (B block), and at 1235 cm−1 (A and B) for the νs. For the trans tautomer, the corresponding values for the νa was attributed to the 1421 cm−1 (only observed in the infrared spectra); while the νs was observed in both infrared and Raman spectra, and it was assigned to the bands at 1225 cm−1. It should be noted that theoretical C–N antisymmetric stretching values (of both cis and trans NH tautomers) fall into the 1415–1410 cm−1 range, while in the experimental spectra there exist a difference of 30 cm−1. The same occur with the symmetric mode, presenting a difference about 15 cm−1 in the infrared and Raman spectra. The analysis of the vibrations effectively observed in the solid opens the way to saying that the trans molecule has the C–N bond stronger than the cis one, thus being more difficult to be broken.
In the gas phase, the SH tautomers gain importance and participate in the thermal reaction through the breaking of the C2–N3 bond, as was mentioned previously. For them, theoretical results indicate a bigger difference between the stretching wavenumbers of cis (1263 cm−1) and trans (1282 cm−1), which is in accordance with the experimentally observed for the NH species, i.e. the trans compounds (NH and SH) have the C2–N3 bonds vibrating at higher wavenumbers, thus needing higher energy to break them down.
For comparison, this stretching is assigned at 1353 cm−1 (IR) and 1350 cm−1 (Raman) for 1-acetyl-2-thiohydantoine (TA) and at 1329 and 1336 cm−1 (infrared and Raman, respectively) for the tetramer.27 For 5-BTH, this mode is assigned to the bands located at 1549 and 1522 cm−1 (IR and Raman, respectively); and for 1-Ac-5-BTH, to the signals 1464 cm−1 (infrared) and 1432 cm−1 (Raman).
Table 1 presents the optimized geometric parameters (bond lengths and torsion angles) of cis and trans NH tautomer in comparison with structural data of 5-BTH, 1-Ac-5-BTH and PPT taken as references. In the table it is also presented the parameters of the SH forms, because the infrared spectra are registered in the solid phase – where the species are present as NH tautomers – while the FVP reaction takes place from the SH species,3 as was mentioned previously. Thus, it is important to establish a valid correlation between parameters calculated for the solid, to their direct application into the gas phase.
| Parametersc | Calculated (B3LYP/6-31+G**) | X-ray diffraction data | |||||
|---|---|---|---|---|---|---|---|
| cis NH | trans NH | cis SH | trans SH | 5-BTHa | 1-Ac-5-BTHa | PPTb | |
| a Ref. (5).b Ref. (6).c Mean value for calculated H-bond lengths. | |||||||
| Bond lengths | |||||||
| C5–C10 | 1.533 | 1.529 | 1.537 | 1.536 | |||
| C10–N1 | 1.460 | 1.461 | 1.470 | 1.462 | 1.462(2) | 1.477(2) | 1.388(2) |
| N1–C2 | 1.340 | 1.341 | 1.273 | 1.273 | — | — | 1.347(2) |
| C2–N3 | 1.406 | 1.405 | 1.417 | 1.416 | — | — | 1.385(2) |
| N3–C4 | 1.415 | 1.414 | 1.410 | 1.408 | — | — | 1.397(2) |
C4 O13 |
1.216 | 1.217 | 1.218 | 1.218 | 1.214(2) | 1.217(2) | 1.205(2) |
C2 S12 |
1.689 | 1.688 | — | — | 1.666(1) | 1.645(2) | 1.651(2) |
| C4–C5 | 1.526 | 1.518 | 1.518 | 1.519 | — | — | — |
| N3–C14 | 1.451 | 1.451 | 1.444 | 1.445 | — | — | 1.431(2) |
| C2–S12 | — | — | 1.794 | 1.798 | — | — | — |
| S12–H11 | — | — | 1.347 | 1.347 | — | — | — |
| S12⋯H | 2.39 | 2.43 | — | — | 2.58(2) | 2.00(2) | 2.58(2) |
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| Torsion angles (°) | |||||||
| C10–N1–C2–N3 | 6.6 | −8.0 | −3.7 | −2.4 | — | — | — |
| C4–N3–C2–S12 | −165.4 | 166.2 | 160.3 | 163.1 | 178.5(1) | −178.0(1) | 178.3(2) |
| N1–C2–N3–C4 | 14.5 | −13.5 | −18.7 | −16.4 | — | — | 0.7(2) |
| C2–N3–C4–C5 | 2.8 | −1.5 | −0.3 | −1.9 | — | — | −0.7(2) |
| N3–C4–C5–C13 | −37.2 | 34.1 | 35.5 | 33.4 | — | — | — |
| C4–C5–C10–N1 | 53.0 | −50.3 | −55.7 | −50.4 | — | — | — |
| O13–C4–N3–C14 | 3.5 | −3.3 | −1.7 | −2.7 | — | — | 3.6(2) |
| O13–C4–N3–C2 | 179.7 | −179.8 | −178.7 | −179.7 | −178.7(2) | −178.6(1) | 179.0(2) |
| N1–C2–S12–H11 | — | — | 0.6 | 0.3 | — | — | — |
The interactions between filled and antibonding orbitals represent the deviation of the molecule from the Lewis structure and can be used as a measure of delocalization.30
As was specified in the Introduction section, all the equilibria between different isomers as well as the structural analysis of the molecules have been already studied,11 thus we will start analyzing the most relevant electronic characteristics.
Taking into account the unit O13–C4–N3–C2–S12 (red sequence in Fig. 3), it is possible to differentiate two representative dihedral angles: O13–C4–N3–C2 and C4–N3–C2–S12, both highlighted in the table. The corresponding experimental values of these angles in 5-BTH, 1-Ac-5-BTH and PPT are close to 180°, corroborating the planar structure of thiohydantoines. For our both tautomers (NH and SH), only the O13–C4–N3–C2 angle presents a value close to 180°. The C4–N3–C2–S12 dihedral has a difference of ≈20°, implying that the hexahydroquinazoline moiety is slightly deviated from planarity. Nevertheless, the NBO results show strong delocalizations in the ring, suggesting that the orbitals present an adequate overlapping to favor electronic interactions. In Table 2 are presented the most relevant NBO donor–acceptor interactions for all the tautomers, together with their corresponding values.
| Orbitals | Deloc. energy (kcal mol−1) | ||||
|---|---|---|---|---|---|
| Donor | Acceptor A–B bond | cis NH | cis SH | trans NH | trans SH |
| LP N3 | σ*C2–S12 | 7.29 | 1.12 | 3.15 | 0.86 |
| π*C2–S12 | 21.84 | — | 34.18 | — | |
π*C4 O13 |
48.15 | 48.94 | 48.47 | 49.26 | |
| π*C2–N1 | — | 39.51 | — | 40.33 | |
| LP N1 | σ*C2–S12 | 15.80 | 2.38 | 8.73 | 2.59 |
| π*C2–S12 | 19.51 | — | 30.82 | — | |
| σ*C2–N3 | — | 17.88 | — | 18.01 | |
| LP O13 | σ*C4–N3 | 30.43 | 31.22 | 30.35 | 31.72 |
| σ*C4–C5 | 19.87 | 18.30 | 19.51 | 21.59 | |
The most stabilizing interaction in molecules containing the N–C
O moiety is the delocalization from the lone pair of the nitrogen atom toward the pi antibonding orbital of the carbonyl group (LP N → π*C
O) that contributes largely to the resonance effect,19,20,31–34 and it was also observed in hexahydroquinazolines. From the point of view of the delocalization, it is reasonable to think that this moiety will remain bonded after the thermic rupture independently of the tautomer considered. Following in importance, we find the LP N3 → π*C2–N1 that reinforces the electronic density of the C2–N3 bond through the passage of the electrons toward the antibonding C2–N1 orbital. The value is higher (40.33 as opposed to 39.51 kcal mol−1) for the trans thiol tautomer suggesting an increased stability for it. Another analysis that shows why the trans thiol tautomer should be more stable, has to do with the delocalization afforded by the LP N1 → σ*C2–N3 that leads to an increased electronic density directly over the antibonding C2–N3 orbital (thus weakening the C2–N3 bond), and which is more pronounced for the cis tautomer. Fig. 4 depicts the mentioned interactions for a more clear understanding.
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| Fig. 4 Representation of the most representative electronic delocalizations in (a) cis SH and (b) trans SH; LP N3 → π*C2–N1 (right) and LP N1 → σ*C2–N3 (left), in each figure respectively. | ||
For the cis and trans NH conformers, the delocalization from the LP N3 to π*C2
S12 orbitals (with an energy of 21.84 kcal mol−1 (for the cis) and 34.18 kcal mol−1 (for the trans)), indicates that the C2–N3 bond is stronger in the trans NH than in the cis one, thus following the same trend than the thiol tautomers.
Other useful tool to this kind of studies is the bond order analysis from the natural atomic orbitals (NAO formalism, included in the NBO package). These parameters, called Wiberg bond indexes, consist on the sum of the squares of off-diagonal density matrix elements between atoms, and it is a positive quantity giving idea of the corresponding bond order in the molecule. Thus, values close to 1 suggest a single bond, while those closer to 2 indicate bonds with double bond character. The magnitude of the values is related to the electronic population that results of electronic delocalizations to bonding or antibonding orbitals. Table 3 shows the Wiberg indexes obtained for both dimer and monomer cis/trans NH and SH species. The calculus was carried out for all of the possible forms present in the solid and for the monomeric SH species present in the gas.
| Bond | Molecules | ||||||
|---|---|---|---|---|---|---|---|
| Monomers | Dimers | ||||||
| cis NH | trans NH | cis SH | trans SH | cis NH | trans NH | ||
| Wiberg index | C2–N3 | 1.0496 | 1.0534 | 1.0160 | 1.0185 | 1.0584 | 1.0621 |
C4 O13 |
1.7423 | 1.7418 | 1.7377 | 1.7364 | 1.7470 | 1.7460 | |
| C2–S12 | 1.5730 | 1.5743 | 1.0744 | 1.0746 | 1.4721 | 1.4745 | |
| C4–N3 | 1.0473 | 1.0476 | 1.0477 | 1.0495 | 1.0391 | 1.0411 | |
| C2–N1 | 1.2200 | 1.2171 | 1.7654 | 1.7641 | 1.2944 | 1.2904 | |
The first row shows the indexes corresponding to the C2–N3 bond. It can be seen that for the cis thiol tautomer, the value is the lowest, which implies that this bond is the weakest of the molecule. This fact together with the electronic contributions calculated through the NBO subroutine, would justify the weakness of the bond, hence its reactivity. Even though the row corresponding to the C4–N3 bond has values somewhat lower than those corresponding to the C2–N3 bond (excepting for the cis and trans thiol tautomers), this factor is not enough to overcome the strong effect caused by the resonance over the N–C
O moiety (discussed in the NBO section), in both dimer and monomer NH species. Thus, this C2–N2 bond will remain unbroken. Other remarkable feature is the low double bond character of both C4
O13 and C2–N1 bonds, suggesting strong electronic delocalizations, i.e. the presence of resonant structures. These results are in accordance with the interactions calculated by NBO.
A comparison of the last two columns (cis and trans tautomers) reveals a comparable trend, that is, the same bonds are expected to be broken under thermal excitation. Nevertheless, the trans SH presents a higher value that could be associated to the lower reactivity of the bond, ergo to the temperature of reaction, i.e. the trans species reacts at higher temperature than its cis counterpart.
We also compared the indexes for both cis and trans NH monomers in solid state. In general, it was observed that the C2–N3 bond index is slightly higher for the trans NH, suggesting that this bond is stronger also in the solid phase.
We have utilized the gradient corrected density functional theory,35 with the three-parameter hybrid functional (B3) for the exchange part36 and the Lee–Yang–Parr (LYP) correlation function,37 accepted as a cost-effective approach for the computation of the molecular structure, vibrational frequencies and energies of optimized structures. The PED analysis was carried out with the aid of the VEDA program.38 By combining the results of the VEDA and GAUSSVIEW program39 with symmetry considerations, and by comparison with related molecules, vibrational frequency assignments were made with a high degree of confidence.
A powerful tool used to study the electronic interactions is the NBO subroutine, which allows to analyze many-electron wavefunctions in terms of localized electron-pair bonding units,29 i.e. interactions between the filled (donor) Lewis-type NBO and empty (acceptor) non-Lewis NBO.40 Thus, delocalization energy values obtained from the calculus are the measure of the importance of each interaction. Electronic delocalizations, orbital populations and Wiberg bond orders41 were analyzed using NBO 5.0 program40 implemented in Gaussian 09. All the calculations were performed in vacuum without considering the environment of the molecule.
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: 10.1039/c5ra05645d |
| This journal is © The Royal Society of Chemistry 2015 |