Antoinette Y.
Odendaal‡
a,
Darci J.
Trader‡
a and
Erin E.
Carlson
*ab
aDepartment of Chemistry, Indiana University, 212 S. Hawthorne Dr, Bloomington, IN 47401, USA. E-mail: carlsone@indiana.edu; Fax: (+ 1) 812-855-8300
bDepartment of Molecular and Cellular Biochemistry, Indiana University, 212 S. Hawthorne Dr, Bloomington, IN 47401, USA
First published on 28th January 2011
Natural products account for a significant proportion of modern day therapeutic agents. However, the discovery of novel compounds is hindered by the isolation process, which often relies upon extraction and chromatographic separation techniques. These methods, which are dependent upon the physicochemical properties of the compounds, have a limited ability to both purify and concentrate the minor components of a biological extract. We have devised an isolation strategy based upon an orthogonal chemical feature, namely, functional group composition. Development of a functional group-targeted method is expected to achieve exceptional resolution given the large number of distinct moieties present in natural product extracts. Here, we describe the generation of controllably reversible covalent enrichment tags for the chemoselective isolation of alcohol-containing natural products from complex mixtures.
Generally, natural products are identified by extraction of biological material (e.g., plant material, microbe pellet) and the crude extract is assayed for a desired activity.5–7 Active extracts are then further purified, either by extraction and/or chromatographic methods. Although considerable advances have been made in separation technology yielding strategies that minimize solvent consumption and show increased resolving power,8–10 purification of the active components of a crude extract, which often represent less than 1% by weight, is still considered a major bottleneck in natural products discovery.6 Thus, the need to develop new isolation technologies is clear.
Current strategies facilitate enrichment based on a restricted set of separation mechanisms that are dependent upon molecular properties such as solubility, charge state, or size. An alternative and complementary approach is to target functional group composition. In the early 1980s, Fréchet and coworkers demonstrated the capture of α,β-unsaturated lactone-containing allergens from natural oils with polymer-supported reagents.11,12 This approach, which targeted a very specific functionality, has not been significantly utilized because a practical natural products discovery toolkit requires the development of strategies to address more prevalent functional groups such as the amine, carboxylic acid and alcohol using highly selective and readily reversible reaction conditions.
We recently reported the development of a functional group-targeted method for selective enrichment and profiling of metabolites for metabolomic studies.13,14 The devised methods facilitate exploration of the amine, thiol, carboxylic acid and ketone/aldehyde complements of a cell. Inspired by these results, we sought to extend our functional group-based separation methods to the isolation of natural products. However, for metabolomic studies, we utilized a permanent tagging strategy in which the metabolites were covalently altered with a tag that subsequently aids in their detection by mass spectrometry. We anticipated that a permanent tag would be detrimental to natural products discovery efforts because of its unpredictable effect on biological activity. Thus, we aimed to develop a tagging strategy that employs reactions that are controllably reversible to enable covalent capture of small molecules, facilitating their chemoselective enrichment, followed by release of the unaltered chemical structures. With this approach, targeted compounds, including low-abundance molecules, would be enriched independent of their physicochemical properties.
The devised agents, referred to as reversible enrichment tags, are immobilized on solid support to enable the selective isolation of fractions of natural products present in a complex biological matrix (Fig. 1). Following capture, elimination of compounds that do not contain the targeted functional group is accomplished simply by washing of the resin. Finally, enriched compounds are liberated from the resin using gentle conditions that we expect will not interfere with either the structural integrity of the natural products or subsequent bioassays. Here, we describe the development of a reversible enrichment tag for the capture of alcohol-containing natural products.
![]() | ||
Fig. 1 Depiction of the chemoselective enrichment strategy. Compounds from a crude natural product extract are immobilized onto reversible tagging agents. After enrichment, compounds are released from the solid support to enable direct structural and functional characterization. |
Natural products are rich in oxygen atoms, most often found as alcohols or in heterocycles.15,16 To facilitate the enrichment of alcohol-containing natural products, we pursued development of a reversible tagging strategy using a silyl-functionalized solid support (Scheme 1). Alcohol immobilization is accomplished by activation of the resin to generate the resin-bound silyl triflate or chloride, followed by addition of the alcohol and triethylamine. After extensive washing, release is performed using HF-pyridine followed by quenching with TMSOMe. Though some functionalities, such as the epoxide, may be sensitive to HF-pyridine, we found that this reagent provides the best overall cleavage efficiency. Alternative conditions were significantly less general requiring long reaction times, elevated reaction temperatures and/or subsequent purification steps.
![]() | ||
Scheme 1 General strategy for enrichment of alcohol-containing natural products. |
Although silyl-functionalized resins have been extensively explored for use in synthetic chemistry,17–21 they have not been applied to complex mixtures of compounds. Here, we sought to identify a resin that could not only efficiently capture a breadth of alcohols, but one that could also do so in a chemoselective fashion.
![]() |
|
|
|
---|---|---|---|
![]() |
70% | 0% | 14% |
![]() |
63% | 87% | 68% |
![]() |
60% | 0% | 62% |
![]() |
90% | 81% | 92% |
![]() |
83% | 28% | 66% |
![]() |
68% | 97% | 91% |
![]() |
68% | 89% | 29% |
![]() |
0% | 0% | 0% |
![]() |
0% | 53% | 0% |
![]() |
67% | 66% | 79% |
![]() |
53% | 27% | 21% |
Compounds to Assess Chemoselectivity | |||
![]() |
3% | 0% | 0% |
![]() |
45% | 0% | 0% |
![]() |
46% | 0% | 0% |
![]() |
38% | 0% | 0% |
![]() |
96% | 0% | 0% |
Next, we tested the chemoselectivity of resin 1 by subjecting amine-, thiol- and carboxylic acid-containing compounds (15–19) to the enrichment protocol. All three functional group classes were captured in moderate to high yields clearly demonstrating that exploration of alternative resin architectures would be required to identify an alcohol-selective reagent.
![]() | ||
Scheme 2 Synthesis and regeneration of benzyl alcohol-derived resins. Hydroxylmethyl polystyrene resin can be functionalized with a variety of dichlorodialkyl silanes yielding the capture reagents. Following alcohol enrichment and cleavage, the starting resin is regenerated as indicated by the green arrow. |
A further benefit of the siloxyl-functionalized resins is their ability to be regenerated (Scheme 2; Fig. S1, ESI†). Upon cleavage of enriched alcohols from these solid supports, the starting resin is reproduced, whereas cleavage of silane-functionalized resins yields an unrecoverable silylfluoride product. As evidence of this advantage, we determined that the loading capacities of resins 2 and 3 do not change after subjecting them to a round of alcohol capture and release followed by reactivation (Table S1, ESI†). Examination of the total ion chromatograms of enriched compounds also illustrated the high level of purity provided by this strategy (Fig. S2, ESI†).
Comparison of the dimethyl- and diethyl-substituted resins (2 and 3, respectively) demonstrated that resin 3 is superior in overall enrichment efficiency. In particular, the less sterically demanding resin 2 shows poor yields for less hindered alcohols as these compounds suffer from premature cleavage off of the resin during the washing protocol (e.g., compounds 4, 6, 8). Additionally, the less hindered resin 2 is significantly more reactive than resin 3 increasing its susceptibility to hydrolysis and/or inconsistent enrichment yields (data not shown). Interestingly, resin 2 promotes recovery of a tertiary alcohol (12) suggesting that this resin may be useful for the isolation of extremely hindered alcohols.
![]() | ||
Fig. 2 Extracted ion chromatograms of alcohols captured from Streptomyces griseolus broth. Endogenously-produced anisomycin (8) was captured (30.5 nmol, 82% recovery). Two additional alcohols were spiked into the extract (223 nmol each) and enriched, cortisone (6, 113 nmol, 51% recovery) and trans-androsterone (7, 119 nmol, 53% recovery). |
To further establish the alcohol enrichment capabilities and chemoselectivity of this strategy in the context of an extract, we added two alcohol-containing compounds (6 and 7) and one each of an amine-, thiol-, and carboxylic acid-containing standard (15, 17, 18) prior to capture. Both alcohols were detected in the cleavage solution (Fig. 2) providing additional evidence of the utility of resin 3 for alcohol isolation. The amine-, thiol-, and carboxylic acid-containing compounds were not enriched from the extract (Fig. S4, ESI†) validating our initial chemoselectivity results.
Next, we calculated the ratio of enrichment to further illustrate that alcohol-containing compounds are dramatically enriched compared to molecules containing other functional groups. Following the capture and release protocol, at least a 24-fold enrichment of the alcohols was seen in comparison to compounds not containing this functionality in all cases (Table S2, ESI†). Extract material was also subjected to deactivated resin to confirm that the observed alcohol enrichment was only a result of capture by the activated silane and not due to non-specific binding to the resin. These data confirm that unactivated resin does not enable the capture of alcohol-containing compounds (Table S3, ESI†). Thus, the devised strategy readily facilitated chemoselective enrichment of alcohol-containing natural products from a crude biological extract.
Sample analysis was performed on an Agilent 1200 LC-MS-TOF equipped with a reverse phase column (ZORBAX Eclipse Plus C18, Rapid Resolution HT, 1.8 micron, 2.1 × 50 mm). All sample and standard curve analysis was performed with the following gradient: isocratic elution of 100% A at 0.5 mL min-1 for 2 min followed by a linear gradient of 0–100% B at 0.5 mL min-1 over 6 min, then an isocratic elution for 2 min at 100% B, and re-equilibration with 100% A for 4 min (A: 95:
5 H2O:CH3CN, 0.1% ammonium acetate; B 95
:
5 CH3CN:H2O, 0.1% ammonium acetate). Fragmentation voltages ranged from 75V to 175V. Gel-phase 13C nuclear magnetic resonance (NMR) spectra20 were recorded on a Varian I500 or a Varian VXR-400 instrument. Chemical shifts are reported relative to residual solvent peaks in parts per million. Infrared (IR) spectra were recorded using a Perkin Elmer Spectrum One FT-IR as a KBr pellet.
After 4 h, each vial of resin was transferred to a 10 mL biospin vessel and washed twice under Ar with 4 mL of anhydrous CH2Cl2. The resin was then transferred back to a freshly dried 20 mL scintillation vial. Five vials were immediately placed under an atmosphere of Ar and the sixth vial was rinsed with MeOH/THF to hydrolyze the activated resin, to yield a deactivated control resin. Next, to all vials was added 83 μL of freshly distilled triethylamine and 1 mL of the mixture of the crude bacteria extract containing the chemoselective set of compounds. The vials were capped and agitated overnight at room temperature. The resin was transferred to 10 mL biospin vessels and subjected to the wash protocol described in the Supplementary Information.† The resin vessels were dried overnight in a vacuum desiccator at 30 mmHg. The dried resin was transferred to 20 mL polypropylene vial and swelled with 3 mL of anhydrous THF. To each vial was added 1 mL of a 50/50 mixture (v/v) of HF·pyridine (70/30 wt%)/pyridine (16 mmol of HF, 28 equiv relative to Si). The vials were capped and agitated for 3 h at room temperature. After this time, 5 mL of TMSOMe (36 mmol, 83 equiv relative to Si) was added to quench excess HF and the resin was agitated for an additional 30 min at room temperature. The resin was washed with THF (3 × 2 mL × 10 min) and filtered over a 10 mL fritted polypropylene column into a 20 mL scintillation vial. The THF wash was then concentrated under reduced pressure with no heating and the sample was dissolved in 400 μL of 2:
1
:
1 H2O/THF/MeOH. Analysis was performed by injection of 5 μL of this solution onto a LC-MS-TOF and comparing the observed peak area to that of standard curve data. Comparison of the TIC of the crude bacterial extract to that of the captured molecules is shown in Fig. S3.† The TIC obtained following extract exposure to deactivated resin is also available (Fig. S3, ESI†) and illustrates that alcohol enrichment results only from specific interactions with the activated siloxyl-functionalized resin. Fig. S4† demonstrates that amine-, thiol-, and carboxylic acid-containing compounds were not enriched in this experiment.
Footnotes |
† Electronic supplementary information (ESI) available: Methods for resin washing, determination of resin loading capacities and compound quantification using mass spectrometry. Characterization data for synthesized resins and mass spectrometry data for enriched alcohols, chemoselective experiments and Streptomyces griseolus enrichment. See DOI: 10.1039/c0sc00620c |
‡ These authors contributed equally to this work. |
This journal is © The Royal Society of Chemistry 2011 |