DOI:
10.1039/C1MD00082A
(Concise Article)
Med. Chem. Commun., 2011,
2, 950-965
Received
22nd March 2011
, Accepted 22nd April 2011
First published on 19th May 2011
Abstract
A novel series of aminomethyl substituted thieno[2,3-d]pyrimidines have been identified as adenosine A2A receptor antagonists. Analogues show excellent in vitro activities and have excellent activity in vivo in mouse models of Parkinson's disease.
Introduction
Parkinson's disease (PD) is a chronic, progressive neurological disease that affects ∼1% of the population over the age of 65.1 It is characterized by progressive impairment in motor function caused by gradual loss of COMPOUND LINKS
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Download mol file of compounddopamine (DA) producing neurons in ventral midbrain and concomitant loss of DA input into the striatum.2,3 The loss of DA input leads to dysregulation of striatal function and the classic motor symptoms of PD, such as resting tremor, muscular rigidity and bradykinesia. The impairment of motor function is often accompanied by anxiety, depression and cognitive impairment.
Most treatments for PD focus on restoring COMPOUND LINKS
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Download mol file of compounddopamine signaling to reduce the severity of the motor symptoms.4COMPOUND LINKS
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Download mol file of compoundDopamine replacement therapy using L-DOPA, the precursor to COMPOUND LINKS
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Download mol file of compounddopamine, remains the gold-standard treatment for PD. Although the dopamine targeted therapies work well to address the motor impairments of PD, they all produce undesirable side effects (dyskinesia, hallucinations, on–off effects) that become more severe with continued treatment. This type of therapy has reduced efficacy as the disease progresses and does not address the co-morbidities associated with PD like mood disturbances, postural instability and cognitive impairment.
As a result of these limitations many drug companies have sought non-dopamine based therapies for PD. One approach that has received considerable attention is modulation of COMPOUND LINKS
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Download mol file of compoundadenosine receptors.5COMPOUND LINKS
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Download mol file of compoundAdenosine is a neuromodulator that coordinates responses to COMPOUND LINKS
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Download mol file of compounddopamine and other neurotransmitters in areas of the brain that are responsible for motor function, learning and memory.6COMPOUND LINKS
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Download mol file of compoundAdenosine is comprised of four distinct sub-types designated A1, A2A, A2B, and A3.7 Both A2A and A1 receptors are highly expressed in the brain, particularly striatum, while A2B and A3 receptors are not.8 In the striatum A2A receptors co-localize and physically associate with COMPOUND LINKS
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Download mol file of compounddopamine D2 receptors.2,3A2A and D2 receptors have opposing effects on adenylate cyclase and cAMP production in cells such that A2A receptor antagonists enhance D2 dependent signaling. Of importance to PD, pharmacological blockade of A2A receptors had shown dramatic beneficial effects in preclinical animal models of PD. In fact, several selective A2A antagonists have advanced into clinical development.9
There have been several reports published suggesting that COMPOUND LINKS
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Download mol file of compoundadenosine A1antagonists may improve learning and memory.10 This would suggest that a dual A2A/A1antagonist may offer improved benefit to PD patients as it is known that cognitive deficiencies increase as the disease progresses.11 Unfortunately, it is unknown what balance of A1vs.A2A antagonism would be ideal for PD patient benefit. We would like to report herein a novel series of thieno[2,3-d]pyrimidines as selective A2A and dual A2A/A1receptor antagonists for the potential treatment of PD.
Results and discussion
Initial lead generation, through a de novo approach, led to a series of aminomethyl thieno[2,3-d]pyrimidines that were potent adenosine A2A receptor antagonist with varying degrees of selectivity against COMPOUND LINKS
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Download mol file of compoundadenosine A1 receptors and are represented generically by structure 4 (Scheme 1). The compounds were synthesized starting from the commercially available aminonitrile 1 and reacting with various aryl and heteroaryl nitriles by heating with a catalytic amount of t-BuOK in COMPOUND LINKS
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Download mol file of compounddioxane.12 The resulting aminopyrimidine 2 was oxidized to the corresponding aldehyde 3 using SeO2 (Path 1), that underwent reductive amination with a variety of amines to give the target compound 4. An alternative route (Path 2) was developed to prepare the target compounds where the aminopyrimidine 2 was protected using excess (Boc)2O in the presence of COMPOUND LINKS
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Download mol file of compound4-dimethylamino pyridine (COMPOUND LINKS
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Download mol file of compoundDMAP) to give compound 5. Radical bromination of the methyl group using COMPOUND LINKS
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Download mol file of compoundN-bromosuccinimide (NBS) gave the corresponding bromide 6. The Boc protecting groups were removed with TFA and the resulting bromide was alkylated with a variety of amines to provide the target compounds. This route proved to be helpful for incorporating hindered secondary amines.
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| Scheme 1 Synthesis of aminomethyl substituted thieno[2,3-d]pyrimidines. | |
A third synthetic route was also used to install aryl and heteroaryl substituents that contained methyl groups to avoid mixtures of oxidized or brominated products that would be obtained from the paths outlined in Scheme 1. The aminonitrile 7 was condensed with a variety of heteroaryl nitriles to afford an intermediate aminopyrimidine that was brominated using NBS to afford 8 (Scheme 2). Bromide 8 was converted to the corresponding vinyl intermediate 9 under standard Suzuki conditions using the corresponding vinyl boronic ester. Dihydroxylation using AD-mix followed by oxidation with COMPOUND LINKS
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Download mol file of compoundperiodic acid (HIO4) afforded the aldehyde 3. Reductive amination with a variety of amines affords the target compounds 4.
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| Scheme 2 Synthesis of compounds where R1 contains a methyl group. | |
We started exploring a variety of amines by keeping the right hand portion of the molecule as 2-substituted furan or 2-substituted-5-methylfuran, two heterocycles that were identified that gave good in vitro potency (Table 1). The acyclic amines (10–13) showed modest functional activity against A2A but weak activity for A1 receptors. Cyclopropyl amine 12 did not show any activity in reversing COMPOUND LINKS
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Download mol file of compoundhaloperidol induced catalepsy in mice, which was our primary in vivo screening model.13 Greater than 50% reversal of catalepsy indicates a positive result in the catalepsy model (see Experimental section for more details). The very basic pyrrolidines and COMPOUND LINKS
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Download mol file of compoundpiperidine analogues (14–16) showed slightly increased activity for A2Ain vitro, but showed no effect in vivo reversing COMPOUND LINKS
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Download mol file of compoundhaloperidol induced catalepsy in mice at 10 mg kg−1, p.o. Interestingly, the less basic COMPOUND LINKS
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Download mol file of compoundmorpholine analogues 18 and 19 did show good in vivo activity with 18 having an ED50 = 1.3 mg kg−1. The calculated pKa's14 for the pyrrolidine 14 and piperidine 16 were 8.2 and 8.5, respectively, while the less basic COMPOUND LINKS
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Download mol file of compoundmorpholine analogue 18 has a calculated pKa of 6.5. With a possible trend being identified our focus was to examine the in vitro and in vivo activity of analogues containing less basic amino substituents. We thought that this approach would increase log P values and potentially increase blood brain barrier (BBB) penetration which would increase in vivo activity.
The unsaturated piperidine 21 (calc. pKa = 7.2) was significantly less basic than the saturated compound 16 (calc. pKa = 8.5) and resulted in a 4-fold increase in A2A activity, but more importantly was very potent in vivo having an ED50 < 3.0 mg kg−1, p.o (Table 1). The fluorinated piperidines 22–24 also showed excellent in vitro and in vivo activity. The calculated pKa's for the fluorinated piperidines 22–24 are 7.0, 5.5, and 4.7, respectively, and are also significantly lower than the pKa's for the corresponding pyrrolidine and COMPOUND LINKS
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Download mol file of compoundpiperidine analogues. The cis-2,6-dimethylpiperidine 25 (calc. pKa = 8.5)15 proved to be the most potent group for both A2A and A1 activity while maintaining activity in vivo at 10 mg kg−1. The COMPOUND LINKS
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Download mol file of compoundthiomorpholine analog 28 (calc. pKa = 6.7) also showed good in vitro potency and had an in vivoED50 = 3.2 mg kg−1. The pyrroline 29 (calc. pKa = 6.8) was the most potent compound in vivo having an ED50 < 0.1 mg kg−1. The fluorinated pyrrolidines 30 (calc. pKa = 5.9) and 31 (calc. pKa = 3.3) maintained good activity in vitro against A2A but were less effective in vivo compared to the fluorinated piperidines 22 and 24 despite having comparable pKa values.
With a good handle on the amino substituents we wanted to further explore the scope of the furan substituent. Although the mono-substituted furans showed excellent in vitro and in vivo activity, mono-substituted furans are potential metabolic liabilities. The COMPOUND LINKS
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Download mol file of compoundfuran replacement strategy has also been reported in other chemical scaffolds of A2A receptor antagonists.16 In addition, several of the compounds from Table 1 had low metabolic stability in human liver microsomes (HLM) and short in vivo half-lives in rodent. Therefore, the alkyl substituent on the furan was extended from methyl to ethyl, isopropyl, cyclopropyl and CHF2 (32–42), and chloro- and bromo-substituted furans (43–53) were also prepared (Table 2). The majority of aryl and heteroaryl nitriles were commercially available except propyl, cyclopropyl and CHF2 substituted 2-furanonitriles. The substituted COMPOUND LINKS
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Download mol file of compoundfuran nitriles that were not available were synthesized via the corresponding bromide 51 as indicated in Scheme 3.12,17 The bromide 54, prepared viaScheme 1, was converted to the alkyl substituent, shown in 55, via a Suzuki or Negishi reaction using the appropriate boronic acid or alkyl zinc reagents. The aldehyde 56 was converted to the corresponding difluoride 57 using COMPOUND LINKS
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Download mol file of compound(diethylamino)sulfur trifluoride (DAST) which was incorporated into the thienopyrimidines as outlined in Scheme 1.12
Table 2
A2A and A1 activity for 5-substituted furan analogs
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| Scheme 3 Synthesis of substituted furans. | |
We chose COMPOUND LINKS
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Download mol file of compoundmorpholine and COMPOUND LINKS
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Download mol file of compoundcis-2,6-dimethylpiperidine as the amines to explore the new substitutions and it was clear that the cis-2,6-dimethylpiperidine analogues are generally more potent than their corresponding COMPOUND LINKS
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Download mol file of compoundmorpholine analogues (comparing 32–39), but they are still less potent than the corresponding unsubstituted furan 25 (Table 1). Unfortunately, this was also true when comparing the in vivo activity of 25 and 35, or comparing 18 and 38, where 18 is much more active in reversing catalepsy in mice. This decrease in activity in vivo for 35 and 39 could possibly be explained by the 3–5 fold decrease in A2A functional activity compared to the corresponding unsubstituted analogue 25. However, the inactivity of 38 and the potent activity of the unsubstituted analogue 18 cannot be explained similarly and is surprising considering the comparable in vitro activity, 30.8 and 29.0 nM, respectively.
We also explored chloro- and bromo-substituted furans in compounds 43–53. In general they all maintained good in vitro activity for A2A, but also had decreased activity in vivo for those tested against their corresponding unsubstituted COMPOUND LINKS
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Download mol file of compoundfuran analogs. The pyrrolidine 43 had no activity in vivo at 10 mg kg−1 which was consistent with the results obtained from 14 and 15. The piperidines 46–48 and morpholine 52 were all active in vivo at 10 mg kg−1, p.o. Interestingly, the pyrroline 49 was not active at 10 mg kg−1 which was in stark contrast to the des-Cl analogue 29 which had an ED50 < 0.1 mg kg−1. The general decrease in potency in vivo for the alkyl, chloro- and bromo-substituted furan compounds is surprising given the similar in vitro potencies, but was consistent for all compounds.
Next we explored replacement of the furan with various 5-membered heterocycles (Table 3). The 2-substituted oxazoles 58–60 were significantly less potent (12–40 fold) in vitro against A2A than their corresponding 2-substituted furan analogs 18, 29, and 21, respectively. This was much to our surprise as the replacement of just one atom resulted in such a dramatic loss in activity. Likewise the thiazole 61, methyl thiazoles 62 and 63, isoxazoles 64 and 65, thiophenes 66 and 67, and oxazoles 68 and 69 all had similar decreases in A2A activity compared to their corresponding COMPOUND LINKS
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Download mol file of compoundfuran analogues. Even the benzofuran 70 had significantly decreased in vitro activity. This was somewhat discouraging that the furan was an ideal substituent and could not be readily replaced with other 5-membered heterocycles.
Table 3
A2A and A1 activity for 5-membered heterocyclic analogs
After exploring various heterocyclic replacements for the furan, we decided to explore aryl substituents (Table 4). The phenyl substituted analog 71 was a starting point for us despite the modest A2A activity. Interestingly, fluorine or chlorine substituted in the meta-position gave nearly a 10-fold increase in A2A activity. Further exploration at the meta-position revealed that a cyano group in that position was ideal and gave the most potent compounds (76–84) against A2A. The less basic amines gave the best activity for A2A similar to compounds having the furan substituent. Very basic groups like pyrrolidine 83 were not well tolerated and resulted in no activity against A2A although it had decent A1 activity at 130 nM. The less basic compounds 77, 79 and 80 all had very potent activity in vivo ED50's < 1 mg kg−1. Moving the cyano group to the ortho (85) or para (86–88) positions resulted in decreased in vitro activity against A2A. Other electron withdrawing groups at the meta position like CF3, SO2Me, NO2, and CONMe2 decreased A2A activity significantly. A methoxy group (96–98) in the meta position had modest activity for A2A but still less than that obtained from the cyano group.
Table 4
A2A and A1 activity for aryl substituted analogs
Conclusions
A novel series of aminomethyl substituted thieno[2,3-d]pyrimidines was developed as potent adenosine A2A receptor antagonists. The 2-substituted furans and 2-substituted-5-methyl furans were ideal groups for optimal potency in vitro and in vivo. Investigation of a wide variety of cyclic and acyclic amines revealed some interesting SAR in vivo. The less basic amino substituents in general gave slightly more potent in vitro activity, but proved to be essential for potent in vivo activity. To expand the SAR we chose a few of the better amino substituents to keep constant while we tried to modify the furan portion of the molecule. Replacement of COMPOUND LINKS
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Download mol file of compoundfuran with various 5-membered heterocycles significantly decreased A2A activity. Surprisingly the furan could be replaced with meta-substituted phenyl groups and maintain good in vitro activity against A2A. The 3-cyanophenyl substituent proved to be the ideal group for in vitro A2A activity as well as in vivo activity.
Experimental
Reagent grade chemicals and solvents were purchased from commercial suppliers and used without further purification. All chromatography was performed on COMPOUND LINKS
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Download mol file of compoundsilica gel and were carried out on a combi-flash system equipped with an automated fraction collector. High resolution MS was performed on a JEOL Accutof JMS-T100 LC with a DART CE ionization source operating in the positive mode. All proton nuclear magnetic resonance spectra were determined using a 300 or 400 MHz Bruker NMR with the appropriate internal standards, and chemical shifts are reported in ppm relative to TMS. Defined J values are reported in Hz. All final compounds were purified to ≥95% purity as determined by Agilent 1100 series high performance liquid chromatography (HPLC) with UV detection at 254 nm using the following method: Supelcosil ABZ + PLUS, 3.3 cm × 2.1 cm, 11 min; 1.2 mL min−1 flow rate; 5–95% 0.1% TFA in CH3CN/0.1% TFA in COMPOUND LINKS
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Download mol file of compoundH2O.
Compound 18: 2-furan-2-yl-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
Solid COMPOUND LINKS
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Download mol file of compoundpotassium-tert-butoxide (325 mg, 2.9 mmol) was added to a dioxane solution (7 mL) of COMPOUND LINKS
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Download mol file of compound2-amino-5-methyl-thiophene-3-carbonitrile (2.0 g, 14.5 mmol) and COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile (1.3 g, 14.5 mmol). The resulting mixture was heated in an oil bath at 130 °C for 10 minutes. The dark slurry was cooled to room temperature, diluted with THF, and dry packed onto COMPOUND LINKS
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Download mol file of compoundsilica gel. The material was then purified viacolumn chromatography to give 1.6 g of 2-furan-2-yl-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine.
Solid SeO2 (4.3 g, 39.0 mmol) was added to a dioxane (50 mL)/COMPOUND LINKS
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Download mol file of compoundwater (0.5 mL) suspension of 2-furan-2-yl-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine (3.0 g, 13.0 mmol) and the mixture was heated to 100 °C. After 20 h the mixture was filtered hot and diluted with EtOAc. The organic phase was washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4) and dry packed onto COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 1.7 g of 4-amino-2-(furan-2-yl)thieno[2,3-d]pyrimidine-6-carbaldehyde.
Solid NaBH(OAc)3 (173 mg, 0.82 mmol) was added to a THF solution (4 mL) of 4-amino-2-(furan-2-yl)thieno[2,3-d]pyrimidine-6-carbaldehyde (100 mg, 0.41 mmol) and COMPOUND LINKS
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Download mol file of compoundmorpholine (72 μL, 0.82 mmol) and the mixture was heated to 45 °C. After 16 h the mixture was cooled, diluted with EtOAc, washed with saturated aqueous NaHCO3, COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4), and dry packed onto COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 90 mg of 2-furan-2-yl-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine 18. 1H NMR (COMPOUND LINKS
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Download mol file of compoundDMSO-d6, 300 MHz): δ = 7.81 (1H, s), 7.50 (2H, s), 7.41 (1H, s), 7.11 (1H, d, J 3.4), 6.51–6.72 (1H, m), 3.71 (2H, s), 3.60 (4H, t, J 4.3), 2.44 (4H, br. s); MSm/z 317 (M + H). HRMS calcd for C15H16N4O2S 316.0994, found 317.1051 (M+ + H)
The procedure used to prepare compound 18 was also used to prepare the following compounds with the appropriate amine substituent. Also, the corresponding nitrile replacement for the furan-2-carbonitrile is specified where appropriate.
Compound 10: 6-dimethylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.59 (1H, s), 7.20–7.33 (1H, m), 7.12 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.82 (2H, br. s), 3.78 (2H, s), 2.38 (6H, s); MSm/z 275 (M + H).
Compound 11: 6-diethylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.59 (1H, dd, J 1.7, 0.9), 7.25 (1H, dd, J 3.5, 0.8), 6.96 (1H, s), 6.54 (1H, dd, J 3.4, 1.7), 5.28 (2H, br. s), 3.83 (2H, s), 2.61 (4H, q, J 7.2), 1.08 (6H, t, J 7.2); MSm/z 303 (M + H).
Compound 12: 6-cyclopropylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.60 (1H, d, J 0.8), 7.25 (1H, s), 6.99 (1H, s), 6.55 (1H, dd, J 3.5, 1.8), 5.42 (2H, br. s), 4.09 (2H, s), 2.15–2.32 (1H, m), 0.33–0.56 (4H, m); MSm/z 287 (M + H).
Compound 13: 6-cyclohexylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.59 (1H, d, J 0.8), 7.24 (1H, d, J 3.4), 7.06 (1H, s), 6.54 (1H, dd, J 3.4, 1.7), 5.44 (2H, br. s), 4.05–4.13 (2H, m), 3.49 (1H, s), 2.52–2.66 (1H, m), 2.06 (2H, s), 1.73 (2H, br. s), 1.06–1.35 (6H, m); MSm/z 329 (M + H).
Compound 14: 2-furan-2-yl-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.59 (1H, s), 7.25 (1H, d, J 3.3), 7.06 (1H, s), 6.54 (1H, dd, J 3.3, 1.8), 5.44 (2H, br. s), 3.92 (2H, s), 2.61–2.74 (4H, m), 1.85 (4H, dt, J 6.8, 3.3); MSm/z 301 (M + H).
Compound 17: 6-(azepan-1-ylmethyl)-2-(furan-2-yl)thieno[2,3-d]pyrimidin-4-amine
MS
m/z 329 (M + H).
Compound 20: 6-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-2-(5-methyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.06–7.23 (4H, m), 6.95–7.04 (2H, m), 6.14 (1H, dd, J 3.3, 0.8), 5.35 (2H, br. s), 3.91 (2H, s), 3.74 (2H, s), 2.91 (3H, t, J 5.3), 2.82 (2H, t, J 5.5); MSm/z 377 (M + H).
Compound 21: 6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.60 (1H, s), 7.25 (1H, s), 7.00 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.77 (1H, br. s), 5.69 (1H, br. s), 5.25 (2H, br. s), 3.83 (2H, s), 2.99–3.16 (2H, m), 2.64 (2H, t, J 5.7), 2.12–2.26 (2H, m); MSm/z 313 (M + H).
Compound 22: 6-(4-fluoro-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundDMSO-d6): δH 7.93 (1H, br. s), 7.72 (1H, s), 7.24 (1H, d, J 3.4), 6.70 (1H, d, J 3.4), 4.64 (2H, br. s), 3.35 (1H, m), 3.16 (4H, br. s), 2.08 (4H, br. s); MSm/z 333 (M + H).
Compound 23: 6-(4,4-difluoro-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.59 (1H, s), 7.26 (1H, d, J 3.4), 6.96 (1H, s), 6.55 (1H, dd, J 3.4, 1.5), 5.46 (2H, s), 3.78 (2H, s), 2.63 (4H, t, J 5.5), 1.91–2.11 (4H, m); MSm/z 351 (M + H).
Compound 24: 6-(3,3-difluoro-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundacetone-d6): δH 7.70 (1H, s), 7.36 (1H, s), 7.16 (1H, d, J 3.4), 6.79 (2H, br. s), 6.59 (1H, dd, J 3.4, 1.9), 3.74 (2H, s), 3.63 (2H, br. s), 2.13–2.31 (2H, m), 1.83 (2H, dd, J 12.6, 3.6), 1.46–1.65 (2H, m); MSm/z 351 (M + H). HRMS calcd for C16H16F2N4OS 350.1013, found 350.1066 (M+ + H).
Compound 25: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.59 (1H, s), 7.25 (1H, d, J 3.4), 6.95 (1H, s), 6.55 (1H, dd, J 3.4, 1.5), 5.32 (2H, br. s) 4.11 (2H, s), 2.56 (2H, br. s), 1.76 (2H, br. s), 1.52–1.70 (4H, m), 1.21 (3H, s), 1.19 (3H, s); MSm/z 343 (M + H). HRMS calcd for C18H22N4OS 342.1514, found 343.1621 (M+ + H).
Compound 26: 1-(4-amino-2-furan-2-yl-thieno[2,3-d]pyrimidin-6-ylmethyl)-piperidin-4-ol
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.60 (1H, s), 7.25 (1H, s), 6.99 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.33 (2H, br. s), 3.85 (2H, s), 2.75 (2H, t, J 11.1), 2.56 (2H, t, J 5.3), 1.70–1.99 (5H, m); MSm/z 331 (M + H).
Compound 27: 1-(4-amino-2-furan-2-yl-thieno[2,3-d]pyrimidin-6-ylmethyl)-piperidin-4-one
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.60 (1H, s), 7.26 (1H, s), 7.00 (1H, s), 6.55 (1H, dd, J 3.4, 1.5), 5.47 (2H, s), 3.86 (2H, s), 2.84 (4H, t, J 6.0), 2.49 (4H, t, J 6.0); MSm/z 329 (M + H).
Compound 28: 2-(furan-2-yl)-6-(thiomorpholinomethyl)thieno[2,3-d]pyrimidin-4-amine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.58 (1H, s), 7.21–7.32 (1H, m), 7.12 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.79 (2H, br. s), 3.80 (2H, s), 2.75–2.84 (4H, m), 2.67–2.73 (4H, m); MSm/z 333 (M + H).
Compound 29: 6-((2,5-dihydro-1H-pyrrol-1-yl)methyl)-2-(furan-2-yl)thieno[2,3-d]pyrimidin-4-amine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.59 (1H, s), 7.20–7.33 (1H, m), 7.12 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.82 (2H, s), 5.77 (2H, br. s), 3.78 (2H, s), 3.62 (4H, m); MSm/z 299 (M + H).
Compound 30: 6-(3-fluoro-pyrrolidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.60 (1H, s), 7.25 (1H, d, J 3.4), 6.99 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.34 (2H, br. s), 5.20–5.32 (1H, m), 3.92 (2H, s), 2.93–2.98 (1H, m), 2.82–2.94 (2H, m), 2.57–2.68 (1H, m), 2.06–2.27 (2H, m); MSm/z 319 (M + H).
Compound 31: 6-(3,3-difluoro-pyrrolidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundDMSO-d6): δH 7.82 (1H, s), 7.54 (2H, s), 7.42 (1H, s), 7.12 (1H, d, J 3.4 Hz), 6.63 (1H, dd, J 3.4, 1.9), 3.88 (2H, s), 2.97 (2H, t, J 13.4), 2.80 (2H, t, J 7.0), 2.13–2.40 (2H, m); MSm/z 337 (M + H).
Compound 43: 2-(5-chloro-furan-2-yl)-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound5-Chlorofuran-2-carbonitrile was used in place of COMPOUND LINKS
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Download mol file of compoundDMSO-d6): δH 7.65 (1H br. s), 7.18 (1H, d, J 3.8), 6.67 (1H, d, J 3.4), 3.99 (2H, br. s), 2.68 (4H, m), 1.66–1.89 (4H, m); MSm/z 335 (M + H).
Compound 44: 6-azepan-1-ylmethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound5-Chlorofuran-2-carbonitrile was used in place of COMPOUND LINKS
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Download mol file of compoundDMSO-d6): δH 7.74 (1H, s), 7.24 (1H, br. s), 6.79 (1H, s), 4.61 (2H, br. s), 4.50 (2H, br. s), 3.38 (2H, br. s), 3.13 (4H, br. s), 1.84 (4H, br. s), 1.63 (4H, br. s); MSm/z 363 (M + H).
Compound 46: 2-(5-chloro-furan-2-yl)-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundDMSO-d6): δH 7.72 (1H, s), 7.24 (1H, d, J 3.4), 6.70 (1H, d, J 3.4), 4.64 (2H, br. s), 3.35 (1H, br. s), 3.16 (4H, br. s), 2.08 ppm (4H, br. s); MSm/z 367 (M + H).
Compound 48: 2-(5-chloro-furan-2-yl)-6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 7.22 (1H, d, J 3.4), 7.00 (1H, s), 6.33 (1H, d, J 3.4 Hz), 5.73–5.85 (1H, m), 5.60–5.73 (1H, m), 5.29 (2H, br. s), 3.83 (2H, s), 3.04–3.15 (2H, m), 2.64 (2H, t, J 5.8), 2.14–2.25 (2H, m); MSm/z 347 (M + H).
Compound 49: 2-(5-chloro-furan-2-yl)-6-(2,5-dihydro-pyrrol-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundDMSO-d6): δH 7.45 (1H, s), 7.19 (1H, d, J 3.0), 6.85 (2H, s), 6.67 (1H, d, J 3.0), 5.37 (2H, s), 4.28 (6H, br. s); MSm/z 333 (M + H).
Compound 58: 6-morpholin-4-ylmethyl-2-oxazol-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundmethanol-d4) δH 8.10 (1H, s), 7.41 (1H, s), 7.35 (1H, s), 3.79 (2H, s), 3.68–3.73 (4H, m), 2.49–2.59 (4H, m); MSm/z 318 (M + H).
Compound 59: 6-((2,5-dihydro-1H-pyrrol-1-yl)methyl)-2-(oxazol-2-yl)thieno[2,3-d]pyrimidin-4-amine
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Compound 60: 6-((5,6-dihydropyridin-1(2H)-yl)methyl)-2-(oxazol-2-yl)thieno[2,3-d]pyrimidin-4-amine
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Compound 61: 6-morpholin-4-ylmethyl-2-thiazol-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 7.99 (1H, d, J 3.2), 7.48 (1H, d, J 3.2), 7.03 (1H, s), 5.49 (2H, br. s), 3.66–3.80 (6H, m), 2.46–2.63 (6H, m); MSm/z 334 (M + H).
Compound 64: 2-isoxazol-3-yl-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundacetone-d6): δ = 8.68 (1H, d, J 1.5), 7.33 (1H, s), 6.83–6.91 (3H, m), 3.66 (2H, s), 3.46–3.56 (4H, m), 2.31–2.43 (4H, m); MSm/z 318 (M + H).
Compound 65: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-isoxazol-3-yl-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compoundacetone-d6): δH 8.67 (1H, d, J 1.9), 7.30 (1H, s), 6.88 (1H, d, J 1.5), 6.82 (2H, br. s), 3.97 (2H, s), 2.33–2.51 (2H, m), 1.42–1.56 (2H, m), 1.10–1.26 (4H, m), 1.03 (6H, d, J 6.0); MSm/z 344 (M + H).
Compound 66: 6-pyrrolidin-1-ylmethyl-2-thiophen-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 7.95 (1H, dd, J 3.7, 1.2), 7.41 (1H, dd, J 5.0, 1.2), 7.11 (2H, dd, J 5.0, 3.7), 5.33 (2H, br. s), 3.95 (2H, s), 2.71 (4H, br. s), 1.86 (4H, dt, J 6.7, 3.2); MSm/z 317 (M + H).
Compound 67: 6-morpholin-4-ylmethyl-2-thiophen-2-yl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 7.95 (1H, dd, J 3.7, 1.2), 7.41 (1H, dd, J 5.0, 1.2), 7.12 (1H, dd, J 5.0, 3.7), 6.96 (1H, s), 5.18 (2H, br. s), 3.65–3.85 (6H, m), 2.47–2.65 (4H, m); MSm/z 333 (M + H).
Compound 68: 6-(2,5-dihydro-pyrrol-1-ylmethyl)-2-oxazol-4-yl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundmethanol-d4) δH 8.51 (1H, s), 8.28 (1H, s), 7.34 (1H, s), 5.83 (2H, s), 4.13 (2H, s), 3.63 (4H, s); MSm/z 300 (M + H).
Compound 69: 6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-2-oxazol-4-yl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d) δH 8.41 (1H, s), 7.98 (1H, s), 7.04 (1H, s), 5.74–5.83 (1H, m), 5.64–5.71 (1H, m), 5.44 (2H, br s), 3.85 (2H, s), 3.06–3.12 (2H, m), 2.65 (2H, t, J 5.7), 2.15–2.24 (2H, m); MSm/z 314 (M + H).
Compound 70: 2-benzofuran-2-yl-6-(4-fluoropiperdin-1-ylmethyl)thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 7.45–7.74 (3H, m), 7.30 (1H, m), 7.20 (1H, m), 6.94 (1H, br. s), 5.28 (2H, br. s), 4.66 (1H, d, JHF 48.6), 4.46–4.67 (1H, m), 3.71 (2H, s), 2.38–2.66 (4H, m), 1.72–1.94 (4H, m); MSm/z 383 (M + H).
Compound 71: 6-(morpholinomethyl)-2-phenylthieno[2,3-d]pyrimidin-4-amine
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Download mol file of compoundfuran-2-carbonitrile. MSm/z 327 (M + H).
Compound 72: 2-(3-fluoro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 8.24 (1H, d, J 7.9 Hz), 8.15 (1H, dt, J 10.5, 2.1), 7.44 (1H, td, J 8.0, 5.8), 7.07–7.22 (1H, m), 7.03 (1H, s), 5.23 (2H, br. s), 3.69–3.84 (6H, m), 2.51–2.63 (4H, m); MSm/z 345 (M + H).
Compound 73: 2-(3-chloro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 8.44 (1H, s), 8.31 (1H, dt, J 6.2, 2.2), 7.33–7.47 (2H, m), 6.99 (1H, s), 5.25 (2H, br. s), 3.67–3.85 (6H, m), 2.44–2.63 (4H, m); MSm/z 361 (M + H).
Compound 74: 2-(3,5-difluoro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 7.87–8.05 (2H, m), 7.00 (1H, s), 6.87 (1H, tt, J 8.7, 2.4), 5.23 (2H, br. s), 3.59–3.83 (6H, m), 2.41–2.67 (4H, m); MSm/z 363 (M + H).
Compound 75: 2-(3,4-difluoro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d): δH 8.28 (1H, ddd, J 11.9, 7.9, 2.1), 8.20 (1H, ddd, J 8.7, 4.5, 1.5), 7.15–7.25 (1H, m), 6.99 (1H, s), 5.19 (2H, br. s), 3.52–3.88 (6H, m), 2.46–2.62 (4H, m); MSm/z 363 (M + H).
Compound 76: 3-[4-amino-6-(2,5-dihydro-pyrrol-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
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Download mol file of compoundDMSO-d6) δH 8.60–8.69 (2H, m), 7.91–7.99 (1H, m), 7.70 (1H, t, J 7.7), 7.60 (2H, br. s), 7.47 (1H, s), 5.83 (2H, s), 4.03 (2H, s), 3.52 (4H, s); MSm/z 334 (M + H).
Compound 77: 3-(4-amino-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-2-yl)-benzonitrile
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Download mol file of compoundchloroform-d) δH 8.76 (1H, s), 8.67 (1H, dt, J 7.9, 1.5), 7.70 (1H, dt, J 7.8, 1.4), 7.55 (1H, t, J 7.9), 7.03 (1H, s), 5.34 (2H, br. s), 3.71–3.81 (6H, m), 2.51–2.63 (4H, m); MSm/z 352 (M + H). HRMS calcd for C18H17N5OS 351.1154, found 352.1268 (M+ + H).
Compound 78: 3-[4-amino-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
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Download mol file of compoundchloroform-d): δH 8.77 (1H, s), 8.68 (1H, d, J 7.9), 7.70 (1H, d, J 7.9), 7.56 (1H, t, J 7.7), 7.00 (1H, s), 5.25 (2H, br. s), 3.74 (2H, d, J 2.3), 2.80–3.00 (2H, m), 1.93–2.15 (2H, m), 1.57–1.78 (2H, m), 1.19–1.39 (2H, m), 0.82–0.97 (6H, m); MSm/z 378 (M + H).
Compound 79: 3-[4-amino-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
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Download mol file of compoundchloroform-d) δH 8.77 (1H, s), 8.68 (1H, d, J 8.1), 7.70 (1H, dt, J 7.7, 1.3), 7.56 (1H, t, J 7.8), 7.00 (1H, s), 5.26 (2H, s), 4.73 (1H, d, JHF 48.7), 3.78 (2H, s), 2.59–2.69 (2H, m), 2.48–2.58 (2H, m), 1.87–1.02 (4H, m); MSm/z 368 (M + H). HRMS calcd for C19H18FN5S 367.1267, found 368.1301 (M+ + H).
Compound 80: 3-[4-amino-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
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Download mol file of compoundchloroform-d) δH 8.77 (1H, t, J 1.5), 8.68 (1H, dt, J 7.9, 1.5), 7.70 (1H, dt, J 7.6, 1.5), 7.56 (1H, t, J 7.9), 7.04 (1H, s), 5.27 (2H, br. s), 3.89 (2H, s), 2.76 (2H, t, JHF 11.1), 2.55–2.63 (2H, m), 1.77–1.99 (4H, m); MSm/z 386 (M + H).
Compound 81: 3-(4-amino-6-thiomorpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-2-yl)-benzonitrile
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Download mol file of compoundmethanol-d4) δH 8.61–8.67 (2H, m), 7.93 (1H, ddd, J 7.7, 1.3, 1.1), 7.70 (1H, t, J 7.7), 7.60 (2H, br. s), 7.45 (1H, s), 3.78 (2H, s), 2.69–2.76 (4H, m), 2.61–2.67 (4H, m); MSm/z 368 (M + H).
Compound 82: 3-[4-amino-6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
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Download mol file of compoundchloroform-d) δH 8.75 (1H, t, J 1.5), 8.66 (1H, ddd, J 8.1, 1.3, 1.1), 7.69 (1H, ddd, J 7.7, 1.3, 1.1), 7.55 (1H, t, J 7.7), 7.06 (1H, s), 5.75–5.82 (1H, m), 5.64–5.71 (1H, m), 5.39 (2H, br. s), 3.86 (2H, s), 3.06–3.15 (2H, m), 2.67 (2H, t, J 5.7), 2.17–2.24 (2H, m); MSm/z 348 (M + H).
Compound 83: 3-(4-amino-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-2-yl)-benzonitrile
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Download mol file of compoundchloroform-d) δH 8.76 (1H, s), 8.67 (1H, dt, J 7.9, 1.3), 7.69 (1H, dt, J 7.6, 1.5), 7.55 (1H, t, J 7.7), 7.03 (1H, s), 5.32 (2H, br. s), 3.90 (2H, s), 2.58–2.68 (4H, m), 1.77–1.89 (4H, m); MSm/z 336 (M + H).
Compound 84: 3-[4-amino-6-(2,6-dimethyl-morpholin-4-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundacetone-d6): δH 8.54–8.65 (2H, m), 7.72 (1H, d, J 7.9), 7.57 (1H, t, J 8.1), 7.30 (1H, s), 6.84 (2H, br. s), 3.64 (2H, s), 3.42–3.58 (2H, m), 2.62–2.77 (2H, m), 1.63 (2H, t, J 10.7), 0.95 (3H, s), 0.93 (3H, s); MSm/z 380 (M + H).
Compound 85: 2-[4-amino-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
COMPOUND LINKS
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Download mol file of compound1,2-Dicyanobenzene was used in place of COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d) δH 8.36 (1H, d, J 8.1), 7.81 (1H, d, J 7.6), 7.67 (1H, td, J 7.8, 1.3), 7.48–7.53 (1H, m), 7.05 (1H, s), 5.36 (2H, s), 4.74 (1H, d, JHF 48.7), 3.79 (2H, s), 2.47–2.70 (4H, m), 1.83–2.02 (4H, m); MSm/z 368 (M + H).
Compound 86: 4-[4-amino-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d) δH 8.55 (2H, d, J 8.7), 7.74 (2H, d, J 8.7), 7.01 (1H, s), 5.25 (2H, s), 4.74 (1H, d, JHF 48.6), 3.78 (2H, s), 2.48–2.69 (4H, m), 1.85–1.99 (4H, m); MSm/z 368 (M + H).
Compound 87: 4-[4-amino-6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d) δH 8.56 (2H, d, J 8.3), 7.74 (2H, d, J 8.3), 7.05 (1H, s), 5.76–5.84 (1H, m), 5.62–5.73 (1H, m), 5.22 (2H, br. s), 3.86 (2H, s), 3.08–3.13 (2H, m), 2.66 (2H, t, J 5.7), 2.17–2.24 (2H, m); MSm/z 348 (M + H).
Compound 88: 4-[4-amino-6-(2,5-dihydro-pyrrol-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile
COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d) δH 8.55 (2H, d, J 8.7), 7.74 (2H, d, J 8.7), 7.04 (1H, s), 5.81 (2H, s), 5.23 (2H, br. s), 4.09 (2H, s), 3.61 (4H, s); MSm/z 334 (M + H).
Compound 89: 6-((2,5-dihydro-1H-pyrrol-1-yl)methyl)-2-(3-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine
COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 8.75 (1H, s), 8.65 (1H, d, J 7.9), 7.70 (1H, d, J 7.5), 7.59 (1H, t, J 7.9), 7.07 (1H, s), 5.83 (2H, s), 5.26 (2H, br. s), 4.11 (2H, s), 3.60–3.67 (4H, m). MSm/z 377 (M + H).
Compound 90: 6-((4-fluoropiperidin-1-yl)methyl)-2-(3-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine
COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 8.75 (1H, s), 8.65 (1H, d, J 7.9), 7.70 (1H, d, J 7.9), 7.59 (1H, t, J 7.7), 7.04 (1H, s), 5.26 (2H, br. s), 3.81 (2H, s), 2.49–2.76 (4H, m), 1.88–2.04 (4H, m); MSm/z 411 (M + H).
Compound 91: 6-((4-fluoropiperidin-1-yl)methyl)-2-(4-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine
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Download mol file of compoundchloroform-d): δH 8.57 (2H, d, J 8.3), 7.72 (2H, d, J 8.3), 7.05 (1H, br. s), 5.26 (2H, br. s), 4.81 (1H, td, J 5.8, 3.0), 3.82 (2H, s), 3.37–3.67 (4H, m), 2.67 (4H, m); MSm/z 411 (M + H).
Compound 92: 6-((4-fluoropiperidin-1-yl)methyl)-2-(2-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine
COMPOUND LINKS
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Download mol file of compoundchloroform-d): v 7.79 (1H, d, J 7.9), 7.73 (1H, d, J 7.4), 7.64 (1H, t, J 7.3), 7.54 (1H, t, J 7.6), 7.06 (1H, s), 5.29 (2H, br. s), 4.74–4.90 (1H, m), 3.81 (2H, s), 3.35–3.70 (4H, m), 2.45–2.66 (4H, m); MSm/z 411 (M + H).
Compound 93: 6-((4-fluoropiperidin-1-yl)methyl)-2-(3-(methylsulfonyl)phenyl)thieno[2,3-d]pyrimidin-4-amine
COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 9.04 (1H, s), 8.77 (1H, d, J 7.9), 8.03 (1H, d, J 7.5), 7.68 (1H, t, J 7.9), 7.07 (1H, br. s), 5.47 (2H, br. s), 4.76 (1H, d, JHF 48.6), 3.81 (2H, br. s), 3.15 (3H, s), 2.60 (4H, m), 1.95 (4H, m); MSm/z 421 (M + H).
Compound 94: 6-((4-fluoropiperidin-1-yl)methyl)-2-(3-nitrophenyl)thieno[2,3-d]pyrimidin-4-amine
COMPOUND LINKS
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Download mol file of compound3-Nitrobenzonitrile was used in place of COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d) δH 9.31 (1H, t, J 2.0), 8.79 (1H, dt, J 7.8, 1.3), 8.28 (1H, ddd, J 8.2, 2.3, 1.2), 7.62 (1H, t, J 7.9), 7.01 (1H, s), 5.25 (2H, s), 4.74 (1H, d, JHF 48.7), 3.79 (2H, s), 2.48–2.69 (4H, m), 1.83–2.00 (4H, m); MSm/z 388 (M + H).
Compound 95: 3-(4-amino-6-((4-fluoropiperidin-1-yl)methyl)thieno[2,3-d]pyrimidin-2-yl)-N,N-dimethylbenzamide
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Download mol file of compound3-Cyano-N,N-dimethylbenzamide was used in place of COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d) δH 8.45 (1H, m), 8.41 (1H, dt, J 7.2, 1.9), 7.43–7.53 (2H, m), 7.31 (1H, s), 6.73 (2H, br. s), 4.71 (1H, d, JHF 48.6), 3.76 (2H, s), 3.17 (3H, s), 3.08 (3H, s), 2.60–2.71 (2H, m), 2.45–2.57 (2H, m), 1.84–2.02 (4H, m). MSm/z 414 (M + H).
Compound 96: 6-(4-fluoro-piperidin-1-ylmethyl)-2-(3-methoxy-phenyl)-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d) δH 8.02 (1H, dt, J 7.6, 1.3), 7.99 (1H, dd, J 2.6, 1.5), 7.37 (1H, t, J 7.9), 6.96–7.02 (2H, m), 5.18 (2H, br. s), 4.72 (1H, d, JHF 49.0), 3.92 (3H, s), 3.76 (2H, s), 2.59–2.69 (2H, m), 2.47–2.57 (2H, m), 1.85–1.99 (4H, m); MSm/z 373 (M + H).
Compound 97: 2-(3-methoxy-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundchloroform-d) δH 7.97–8.06 (2H, m), 7.37 (1H, t, J 7.9), 7.01 (1H, dd, J 2.6, 0.8), 6.98 (1H, s), 5.27 (2H, br. s), 3.91 (3H, s), 3.71–3.77 (6H, m), 2.52–2.57 (4H, m); MSm/z 357 (M + H).
Compound 98: 6-(3,3-difluoro-piperidin-1-ylmethyl)-2-(3-methoxy-phenyl)-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundfuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d) δH 7.97–8.05 (2H, m), 7.37 (1H, t, J 8.1), 6.96–7.03 (2H, m), 5.32 (2H, s), 3.91 (3H, s), 3.85 (2H, s), 2.74 (2H, t, JHF 11.1), 2.49–2.60 (2H, m), 1.73–1.98 (4H, m); MSm/z 391 (M + H).
Compounds 38–42 were prepared according to the procedures described for compound 18 except 5-difluoro-furan-2-carbonitrile was used in place of COMPOUND LINKS
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Download mol file of compoundfuran-2-carbonitrile. 5-Difluoro-furan-2-carbonitrile was prepared via the following procedure: To a solution of Et2NSF3 (2.8 mL, 21.4 mmol) and CH2Cl2 (10 mL) at 4 °C was added a solution of COMPOUND LINKS
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Download mol file of compound5-formyl-furan-2-carbonitrile (2.44 g, 20.2 mmol; W. Hoyle and G. P. Roberts, J. Med. Chem., 1973, 16, 709) in CH2Cl2 (10 mL). After 30 min at 4 °C, saturated aqueous NaHCO3 was added, the layers were separated and the aqueous layer was extracted with CH2Cl2. The combined organics were dried (Na2SO4) and concentrated to give 2.15 g of COMPOUND LINKS
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Download mol file of compound5-difluoromethyl-furan-2-carbonitrile that was used without further purification.
Compound 38: 2-(5-difluoromethyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundDMSO-d6) δH 7.63 (2H, br. s), 7.43 (1H, s), 7.19 (1H, d, J 3.4), 7.16 (1H, t, J 53.3), 7.02 (1H, m), 3.72 (2H, s), 3.59 (4H, t, J 4.4), 2.44 (4H, m); MSm/z 367 (M + H).
Compound 39: 2-(5-difluoromethyl-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundacetone-d6) δH 7.40 (1H, s), 7.19 (1H, d, J 3.4 Hz), 7.00 (1H, t, J 53.7 Hz), 6.93–6.97 (1H, m), 6.89 (1H, br. s), 4.08 (2H, s), 2.50–2.62 (2H, m), 1.53–1.67 (4H, m), 1.27–1.33 (2H, m), 1.15 (6H, d, J 6.4); MSm/z 393 (M + H).
Compound 40: 2-(5-difluoromethyl-furan-2-yl)-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundacetone-d6) δH 7.39 (1H, s), 7.20 (1H, d, J 3.7), 7.01 (1H, t, J 53.7), 6.94–6.98 (1H, m), 6.89 (2H, br. s), 3.78 (2H, d, J 1.2), 2.61–2.71 (2H, m), 2.43–2.52 (2H, m), 2.08–2.10 (1H, m), 1.74–1.99 (4H, m); MSm/z 383 (M + H).
Compound 41: 2-(5-difluoromethyl-furan-2-yl)-6-(4,4-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundacetone-d6) δH 7.41 (1H, s), 7.21 (1H, d, J 3.4), 7.01 (1H, t, J 53.7), 6.94–6.99 (1H, m), 6.92 (2H, br. s), 3.87 (2H, d, J 1.0), 2.66 (4H, t, J 5.5), 1.95–2.04 (4H, m); MSm/z 401 (M + H).
Compound 42: 2-(5-difluoromethyl-furan-2-yl)-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundacetone-d6) δH 7.41 (1H, s), 7.21 (1H, d, J 3.7), 7.01 (1H, t, J 53.7), 6.89–6.98 (3H, m), 3.90 (2H, s), 2.77 (2H, t, J 11.5), 2.58 (2H, t, J 5.0), 1.85–1.98 (2H, m), 1.71–1.81 (2H, m); MSm/z 401 (M + H).
Compound 63: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine
Solid COMPOUND LINKS
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Download mol file of compoundpotassium-tert-butoxide (182 mg, 1.6 mmol) was added to a dioxane solution (4 mL) of COMPOUND LINKS
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Download mol file of compound2-amino-3-cyanothiophene (1.0 g, 8.1 mmol) and COMPOUND LINKS
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Download mol file of compound4-methyl-thiazole-2-carbonitrile (1.0 g, 8.1 mmol). The resulting mixture was heated in an oil bath at 130 °C for 10 minutes. The dark slurry was cooled to room temperature, diluted with THF, and dry packed onto COMPOUND LINKS
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Download mol file of compoundsilica gel. The material was the purified viacolumn chromatography to give 1.1 g of 2-(4-methylthiazol-2-yl)thieno[2,3-d]pyrimidin-4-amine.
Solid NBS (623 mg, 3.5 mmol) was added to a THF solution (30 mL) of 2-(4-methylthiazol-2-yl)thieno[2,3-d]pyrimidin-4-amine (800 mg, 3.2 mmol). After 3 h the mixture was diluted with EtOAc and washed with COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 825 mg of 6-bromo-2-(4-methylthiazol-2-yl)thieno[2,3-d]pyrimidin-4-amine.
Neat COMPOUND LINKS
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Download mol file of compoundvinylboronic acid dibutyl ester (1.0 mL, 4.7 mmol) was added to a dioxane (20 mL)/COMPOUND LINKS
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Download mol file of compoundwater (5 mL) solution of 6-bromo-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine (775 mg, 2.4 mmol), Pd(dppf)Cl2 (196 mg, 0.2 mmol), and K2CO3 (650 mg, 4.7 mmol) and the mixture was heated to 80 °C. After 3 h the mixture was cooled and diluted with EtOAc. The organic phase was washed with COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 460 mg of 2-(4-methyl-thiazol-2-yl)-6-vinyl-thieno[2,3-d]pyrimidin-4-ylamine.
Solid MeSO2NH2 (162 mg, 1.7 mmol) was added to a t-BuOH (8 mL)/COMPOUND LINKS
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Download mol file of compoundwater (8 mL) solution of AD mix-α (2.4 g). After 15 min the resulting mixture was added to an acetone suspension (8 mL) of 2-(4-methyl-thiazol-2-yl)-6-vinyl-thieno[2,3-d]pyrimidin-4-ylamine (460 mg, 1.7 mmol) and the mixture was stirred vigorously. After 18 h COMPOUND LINKS
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Download mol file of compoundsodium sulfite (2.5 g) was added and the mixture was stirred for an additional 30 minutes. The mixture was extracted with EtOAc and the combined extracts were washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4), and concentrated to give 350 mg of 1-[4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-6-yl]-ethane-1,2-diol that was used without further purification.
Solid HIO4 (775 mg, 3.4 mmol) was added to a THF solution (20 mL) of 1-[4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-6-yl]-ethane-1,2-diol (350 mg, 1.1 mmol). After 2 h saturated aqueous NaHCO3 was added and the aqueous phase was extracted with EtOAc. The combined extracts were washed with COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 113 mg of 4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidine-6-carbaldehyde.
Solid NaBH(OAc)3 (45 mg, 0.21 mmol) was added to a THF solution (2 mL) of 4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidine-6-carbaldehyde (40 mg, 0.14 mmol) and COMPOUND LINKS
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Download mol file of compoundcis-2,6-dimethyl-piperidine (58 μL, 0.43 mmol) and the mixture was heated to 45 °C. After 16 h the mixture was cooled, diluted with EtOAc, washed with saturated aqueous NaHCO3, COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 15 mg of 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine 63. 1H NMR (COMPOUND LINKS
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Download mol file of compoundAcetone, 300 MHz): δ = 7.29 (1H, s), 7.13 (1H, s), 6.87 (2H, br. s), 3.96 (2H, s), 2.43 (2H, br. s), 2.34 (3H, s), 1.38–1.58 (2H, m), 1.10–1.23 (4H, m), 1.02 (6H, d, J 6.4); MSm/z 374 (M + H).
The procedure used to prepare compound 63 was also used to prepare the following compounds with the appropriate amine substituent. Also, the corresponding nitrile replacement for the 4-methyl-thiazole-2-carbonitrile is specified where appropriate.
Compound 15: 2-(5-methyl-furan-2-yl)-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound4-methyl-thiazole-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.17 (1H, d, J 3.4), 7.11 (1H, s), 6.15 (1H, d, J 3.4), 5.50 (2H, br. s), 3.94 (2H, s), 2.66–2.80 (4H, m), 2.44 (3H, s), 1.86 (4H, dt, J 6.4, 3.3); MSm/z 315 (M + H).
Compound 16: 2-(5-methyl-furan-2-yl)-6-piperidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound4-methyl-thiazole-2-carbonitrile. 1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.09 (1H, d, J 3.0), 6.90 (1H, s), 6.08 (1H, d, J 2.3), 5.21 (2H, br. s), 3.65 (2H, s), 2.42 (4H, br. s), 2.38 (3H, s), 1.55 (4H, quin, J 5.6), 1.39 (2H, d, J 5.1); MSm/z 329 (M + H).
Compound 19: 2-(5-methyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.17 (1H, d, J 3.3), 6.95 (1H, s), 6.15 (1H, d, J 2.5), 5.27 (2H, br. s), 3.61–3.80 (6H, m), 2.49–2.58 (4H, m), 2.45 (3H, s); MSm/z 331 (M + H).
Compound 20: 6-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-2-(5-methyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound4-methyl-thiazole-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.06–7.23 (4H, m), 6.95–7.04 (2H, m), 6.14 (1H, dd, J 3.3, 0.8), 5.35 (2H, br. s), 3.91 (2H, s), 3.74 (2H, s), 2.91 (3H, t, J 5.3), 2.82 (2H, t, J 5.5); MSm/z 377 (M + H).
Compound 62: 2-(4-methyl-thiazol-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundacetone-d6): δH 7.31 (1H, s), 7.13 (1H, s), 6.88 (2H, br. s), 3.65 (2H, s), 3.47–3.56 (4H, m), 2.35–2.40 (4H, m), 2.34 (3H, s); MSm/z 348 (M + H).
Compound 47: 2-(5-chloro-furan-2-yl)-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundpotassium-tert-butoxide (162 mg, 1.4 mmol) was added to a dioxane solution (4 mL) of COMPOUND LINKS
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Download mol file of compound2-amino-5-methyl-thiophene-3-carbonitrile (1.0 g, 7.2 mmol) and COMPOUND LINKS
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Download mol file of compound5-chlorofuran-2-carbonitrile (920 mg, 7.2 mmol). The resulting mixture was heated in an oil bath at 130 °C for 10 minutes. The dark slurry was cooled to room temperature, diluted with THF, and dry packed onto COMPOUND LINKS
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Download mol file of compoundsilica gel. The material was the purified viacolumn chromatography to give 950 mg of 2-(5-chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine.
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Download mol file of compoundDMAP (29 mg, 0.2 mmol) was added to a THF solution (12 mL) of (Boc)2O (1.3 g, 5.9 mmol) and 2-(5-Chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine (630 mg, 2.4 mmol). After 6 h the mixture was diluted with EtOAc and the organic layer was washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4), concentrated and purified viacolumn chromatography to give 928 mg of [2-(5-Chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester.
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Download mol file of compoundbenzoyl peroxide (34 mg, 0.1 mmol) was added to a benzene solution (10 mL) of DBDMH (314 mg, 1.1 mmol) and [2-(5-chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester (928 mg, 2.0 mmol) and the resulting mixture was heated to reflux. After 14 h the mixture was cooled to rt, diluted with EtOAc and the organic layer was washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4), concentrated and purified viacolumn chromatography to give 651 mg of [6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester.
Neat TFA (2 mL) was added to a CH2Cl2 solution (8 mL) of [6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester (651 mg). After 4 h saturated aqueous NaHCO3 was added and the aqueous phase was extracted with EtOAc. The combined organics were washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4), and concentrated to give 369 mg of 6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine that was used without further purification.
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Download mol file of compound3,3-difluoro-piperidine hydrochloride (34 mg, 0.22 mmol) was added to a THF solution (1 mL) of COMPOUND LINKS
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Download mol file of compounddiisopropylethyl amine (0.10 mL, 0.56 mmol) and 6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine (50 mg, 0.14 mmol) and the mixture was heated to 40 °C. After 2 h the mixture was diluted with EtOAc then washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4), concentrated and purified viacolumn chromatography to give 31 mg of 2-(5-chloro-furan-2-yl)-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine 47. 1H NMR (COMPOUND LINKS
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Download mol file of compoundchloroform-d, 300 MHz): δ = 7.23 (1H, d, J 3.4), 6.99 (1H, s), 6.34 (1H, d, J 3.4), 5.31 (2H, br. s), 3.86 (2H, s), 2.75 (2H, t, J 11.1), 2.57 (2H, t, J 5.1), 1.73–1.99 (4H, m); MSm/z 385 (M + H). HRMS calcd for C18H12ClF2N4OS 384.0623, found 385.0649 (M+ + H)
The procedure used to prepare compound 47 was also used to prepare the following compounds with the appropriate amine substituent:
Compound 45: 2-(5-chloro-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.23 (1H, d, J 3.8), 6.97 (1H, s), 6.34 (1H, d, J 3.8), 5.39 (2H, br. s), 3.68–3.80 (6H, m), 2.46–2.61 (4H, m); MSm/z 351 (M + H).
Compound 50: 2-(5-chloro-furan-2-yl)-6-(3,3-difluoro-pyrrolidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.22–7.26 (1H, m), 7.00 (1H, s), 6.34 (1H, d, J 3.4 Hz), 5.41 (2H, br. s), 3.90 (2H, s), 3.01 (2H, t, J 13.2), 2.86 (1H, t, J 7.0), 2.33 (2H, tt, J 14.4, 7.1); MSm/z 371 (M + H).
Compound 51: 2-(5-bromo-furan-2-yl)-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound5-Bromofuran-2-carbonitrile was used in place of COMPOUND LINKS
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Download mol file of compound5-chlorofuran-2-carbonitrile. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.20 (1H, d, J 3.4), 7.07 (1H, s), 6.47 (1H, d, J 3.6), 5.47 (2H, br. s), 3.91 (2H, s), 2.61–2.74 (4H, m), 1.85 (4H, dt, J 6.7, 3.2); MSm/z 380 (M + H).
Compound 52: 2-(5-bromo-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound5-Bromofuran-2-carbonitrile was used in place of COMPOUND LINKS
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Download mol file of compound5-chlorofuran-2-carbonitrile. 1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.20 (1H, d, J 3.4), 6.97 (1H, s), 6.48 (1H, d, J 3.4), 5.40 (2H, br. s), 3.61–3.86 (6H, m), 2.40–2.65 (4H, m); MSm/z 396 (M + H). HRMS calcd for C15H15BrN4O2S 394.0099, found 395.0147 (M+ + H).
Compound 53: 2-(5-bromo-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
COMPOUND LINKS
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Download mol file of compound5-Bromofuran-2-carbonitrile was used in place of COMPOUND LINKS
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Download mol file of compound5-chlorofuran-2-carbonitrile. 1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.19 (1H, d, J 3.4), 6.95 (1H, s), 6.48 (1H, d, J 3.7), 5.44 (2H, br. s), 4.11 (2H, s), 2.45–2.66 (2H, m), 1.55–1.70 (2H, m), 1.26–1.39 (4H, m), 1.19 (6H, d, J 6.1); MSm/z 422 (M + H).
Compound 32: 2-(5-ethyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
A 1 M THF solution of Et2Zn (0.6 mL, 0.60 mmol) was added to a THF solution (1.5 mL) of Pd(dppf)Cl2 (10 mg, 0.01 mmol) and 2-(5-bromo-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine 52 (60 mg, 0.15 mmol) and the mixture was refluxed. After 4 h the mixture was cooled and carefully diluted with EtOAc and COMPOUND LINKS
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Download mol file of compoundwater. The aqueous phase was extracted with EtOAc and the combined organics were washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4), and dry packed onto COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 33 mg of the title compound. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.19 (1H, d, J 3.4), 6.95 (1H, s), 6.17 (1H, d, J 3.4), 5.32 (2H, s), 3.68–3.77 (6H, m), 2.81 (2H, q, J 7.5), 2.44–2.58 (4H, m), 1.25–1.34 (3H, m); MSm/z 345 (M + H).
The procedure to prepare compound 32 was also used to prepare the following compounds:
Compound 33: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(5-ethyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine
Compound 53 was used in place of compound 52. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.18 (1H, d, J 3.4), 6.95 (1H, s), 6.16 (1H, d, J 3.4), 5.34 (2H, br. s), 4.13 (2H, s), 2.81 (2H, q, J 7.4), 2.57 (2H, br. s), 1.78 (4H, br. s), 1.51–1.70 (2H, m), 1.23–1.35 (3H, m), 1.21 (6H, d, J 6.0); MSm/z 371 (M + H).
Compound 34: 2-(5-isopropyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
i-PrZnBr was used in place of Et2Zn. 1H NMR (400 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.18 (1H, d, J 3.4), 6.95 (1H, s), 6.15 (1H, d, J 3.4), 5.26 (2H, br. s), 3.68–3.79 (6H, m), 3.07–3.19 (1H, m), 2.45–2.59 (4H, m), 1.32 (6H, d, J 7.1); MSm/z 359 (M + H).
Compound 35: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(5-isopropyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine
i-PrZnBr and compound 53 were used in place of Et2Zn and compound 52, respectively. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.17 (1H, d, J 3.4), 6.95 (1H, s), 6.14 (1H, d, J 3.0), 5.34 (2H, br. s), 4.13 (2H, s), 3.12 (1H, quin, J 6.9), 2.57 (2H, br. s), 1.51–1.80 (6H, m), 1.32 (6H, d, J 6.8), 1.2 (6H, d, J 6.0); MSm/z 385 (M + H).
Compound 37: 2-(5-cyclopropyl-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine
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Download mol file of compoundcyclopropylboronic acid (31 mg, 0.36 mmol) was added to a toluene (1 mL)/COMPOUND LINKS
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Download mol file of compoundwater (0.05 mL) suspension of 2-(5-bromo-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine 53 (60 mg, 0.14 mmol), Pd(OAc)2 (2 mg, 0.01 mmol), P(Cy)3 (5 mg, 0.02 mmol) and K3PO4 (104 mg, 0.49 mmol) and the mixture was heated to 100 °C. After 4 h the mixture was cooled, diluted with EtOAc, washed with COMPOUND LINKS
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Download mol file of compoundwater and brine, dried (Na2SO4) and dry packed onto COMPOUND LINKS
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Download mol file of compoundsilica gel. Column chromatography gave 30 mg of 2-(5-cyclopropyl-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine 37. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.15 (1H, d, J 3.4), 6.87–6.99 (1H, m), 6.03 (1H, d, J 3.0), 5.27 (2H, s), 4.12 (2H, s), 2.56 (2H, br. s), 2.00–2.11 (1H, m), 1.58–1.71 (2H, m), 1.23–1.41 (4H, m), 1.21 (3H, s), 1.19 (3H, s), 0.89–0.99 (2H, m), 0.79–0.88 (2H, m); MSm/z 383 (M + H).
Compound 36: 2-(5-cyclopropyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine
Compound 36 was prepared according to the procedure described in compound 37 except compound 52 was used in place of compound 53. 1H NMR (300 MHz, COMPOUND LINKS
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Download mol file of compoundchloroform-d): δH 7.16 (1H, d, J 3.4), 6.95 (1H, s), 6.03 (1H, d, J 3.4), 5.29 (2H, s), 3.62–3.83 (6H, m), 2.47–2.56 (4H, m), 1.99–2.12 (1H, m), 0.90–1.00 (2H, m), 0.79–0.89 (2H, m); MSm/z 357 (M + H).
COMPOUND LINKS
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Download mol file of compoundAdenosine A2Areceptor functional assay.
To initiate the functional assay, cryopreserved CHO-K1 cells overexpressing the human adenosine A2Areceptor and containing a cAMP inducible β-galactosidase reporter gene were thawed, centrifuged, COMPOUND LINKS
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Download mol file of compoundDMSO containing media removed, and then seeded with fresh culture media into clear 384-well tissue culture treated plates (BD #353961) at a concentration of 10 K cells per well. Prior to assay, these plates were cultured for two days at 37 °C, 5% CO2 and 90% Rh. On the day of the functional assay, culture media was removed and replaced with 45 μL assay medium (Hams/F-12 Modified (Mediatech # 10-080CV) supplemented w/0.1% BSA). Test compounds were diluted and 11 point curves created at a 1000× concentration in 100% COMPOUND LINKS
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Download mol file of compoundDMSO. Immediately after addition of assay media to the cell plates, 50 nL of the appropriate test compound antagonist or agonist control curves were added to cell plates using a Cartesian Hummingbird. Compound curves were allowed to incubate at room temperature on cell plates for approximately 15 minutes before addition of a 15 nM NECA (Sigma E2387) agonist challenge (5 μL volume). A control curve of NECA, a DMSO/media control, and a single dose of COMPOUND LINKS
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Download mol file of compoundForskolin (Sigma F3917) were also included on each plate. After additions, cell plates were allowed to incubate at 37 °C, 5% CO2, 90% Rh for 5.5–6 hours. After incubation, media was removed, and cell plates were washed 1 × 50 μL with DPBS w/o Ca and Mg (Mediatech 21-031-CV). Into dry wells, 20 μL of 1× Reporter Lysis Buffer (Promega E3971 (diluted in dH2O from 5× stock)) was added to each well and plates frozen at −20 °C overnight. For β-galactosidase enzyme colorimetric assay, plates were thawed out at room temperature and 20 μL 2× assay buffer (Promega) was added to each well. Color was allowed to develop at 37 °C, 5% CO2, 90% Rh for 1–1.5 h or until reasonable signal appeared. The colorimetric reaction was stopped with the addition of 60 μL per well 1 M sodium carbonate. Plates were counted at 405 nm on a SpectraMax Microplate Reader (Molecular Devices). Data were analyzed in Microsoft Excel and IC/EC50 curves were fit using a standardized macro.
COMPOUND LINKS
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Download mol file of compoundAdenosine A1receptor functional assay.
To initiate the functional assay, cryopreserved CHO-K1 cells overexpressing the human adenosine A1receptor and containing a cAMP inducible β-galactosidase reporter gene were thawed, centrifuged, COMPOUND LINKS
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Download mol file of compoundDMSO containing media removed, and then seeded with fresh culture media into clear 384-well tissue culture treated plates (BD #353961) at a concentration of 10 K cells per well. Prior to assay, these plates were cultured for two days at 37 °C, 5% CO2 and 90% Rh. On the day of the functional assay, culture media was removed and replaced with 45 μL assay medium (Hams/F-12 Modified (Mediatech # 10-080CV) supplemented w/0.1% BSA). Test compounds were diluted and 11 point curves created at a 1000× concentration in 100% COMPOUND LINKS
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Download mol file of compoundDMSO. Immediately after addition of assay media to the cell plates, 50 nL of the appropriate test compound antagonist or agonist control curves were added to cell plates using a Cartesian Hummingbird. Compound curves were allowed to incubate at room temperature on cell plates for approximately 15 minutes before addition of a 4 nM r-PIA (Sigma P4532)/1 μM COMPOUND LINKS
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Download mol file of compoundForskolin (Sigma F3917) agonist challenge (5 μL volume). A control curve of r-PIA in1 μM COMPOUND LINKS
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Download mol file of compoundForskolin, a DMSO/Media control, and a single dose of COMPOUND LINKS
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Download mol file of compoundForskolin were also included on each plate. After additions, cell plates were allowed to incubate at 37 °C, 5% CO2, 90% Rh for 5.5–6 hours. After incubation, media was removed, and cell plates were washed 1 × 50 μL with DPBS w/o Ca and Mg (Mediatech 21-031-CV). Into dry wells, 20 μL of 1× Reporter Lysis Buffer (Promega E3971 (diluted in dH2O from 5× stock)) was added to each well and plates frozen at −20 °C overnight. For β-galactosidase enzyme colorimetric assay, plates were thawed out at room temperature and 20 μL 2× assay buffer (Promega) was added to each well. Color was allowed to develop at 37 °C, 5% CO2, 90% Rh for 1–1.5 h or until reasonable signal appeared. The colorimetric reaction was stopped with the addition of 60 μL per well 1 M sodium carbonate. Plates were counted at 405 nm on a SpectraMax Microplate Reader (Molecular Devices). Data were analyzed in Microsoft Excel and IC/EC50 curves were fit using a standardized macro.
Mouse catalepsy study.
COMPOUND LINKS
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Download mol file of compoundHaloperidol, a neuroleptic medication that inhibits COMPOUND LINKS
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Download mol file of compounddopamine D2 receptors, was used to induce catalepsy. In the rodent, catalepsy is characterized by a loss of voluntary motion where limbs uncharacteristically remain in placed positions. Catalepsy was measured in COMPOUND LINKS
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Download mol file of compoundhaloperidol (1 mg kg−1, s.c.) treated mice (fasted, male balb/c mice) after oral administration of compound (0.01, 0.10, 1.0, 3.0 or 10.0 mg kg−1, p.o.), L-DOPA (300 mg kg−1; co-administered with COMPOUND LINKS
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Download mol file of compoundcarbidopa (75 mg kg−1)), or vehicle. Animals were randomly assigned to treatment groups and behavioral testing was performed blind to treatment. Control mice received the respective s.c. and p.o. vehicles. COMPOUND LINKS
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Download mol file of compoundHaloperidol was dissolved in 0.3% COMPOUND LINKS
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Download mol file of compoundtartaric acid in 0.9% saline. L-DOPA was diluted in 0.5% methylcellulose and dosed as a suspension. Compounds were diluted in 0.5% methylcellulose and dosed as a solution. Compounds were administered orally 30 min after COMPOUND LINKS
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Download mol file of compoundhaloperidol. Behavioral testing was conducted one hour after dosing of compounds. The behavioral test trial (maximum duration of 60 s) began by placing the forepaws of fasted, male balb/c mice (18–23 g) on a horizontal bar elevated 3.5 cm above the bench. The cataleptic state was regarded as over and the trial ended when the animal came off the bar by either placing its forepaws on the bench or climbing onto the bar with all of its limbs. Each value represents average (±SEM) time in cataleptic position of n = 9–11 mice per treatment group during a sixty s test session. Results are reported as an ED50 or as active/not active at a single dose.
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- Third Dimensional Explorer software does not take into account the steric effects surrounding the basic atoms and may therefore not give an accurate adjustment for the pKa value. The known pKa of COMPOUND LINKS
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Download mol file of compoundpiperidine is 11.2 (H. K. Hall Jr, J. Am. Chem. Soc., 1957, 79, 5441) and the known pKa of COMPOUND LINKS
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Download mol file of compoundcis-2,6-dimethyl-piperidine is 10.9 (H. K. Hall Jr, J. Am. Chem. Soc., 1957, 79, 5439). Also, the polarity of 25 is significantly less than the corresponding piperidine 16 based on TLC analysis.
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