Aminomethyl substituted thieno[2,3-d]pyrimidines as adenosine A2A receptor antagonists

Brian C. Shook *a, Devraj Charavarty a, J. Kent Barbay a, Aihua Wang a, Kristi Leonard a, Vernon Alford a, Mark Powell a, Derek A. Beauchamp a, Stefanie Rassnick b, Robert Scannevin b, Karen Carroll b, Nathaniel Wallace b, Jeffrey Crooke b, Mark Ault b, Lisa Lampron b, Lori Westover b, Kenneth Rhodes b and Paul F. Jackson a
aMedicinal Chemistry, Johnson & Johnson PRD, Welsh and McKean Roads, P.O. Box 776, Spring House, PA 19477, USA. E-mail: bshook@its.jnj.com; Fax: +1 215-540-4612; Tel: +1 215-628-7047
bCNS Biology, Johnson & Johnson PRD, Welsh and McKean Roads, P.O. Box 776, Spring House, PA 19477, USA

Received 22nd March 2011 , Accepted 22nd April 2011

First published on 19th May 2011


Abstract

A novel series of aminomethyl substituted thieno[2,3-d]pyrimidines have been identified as adenosine A2A receptor antagonists. Analogues show excellent in vitro activities and have excellent activity in vivo in mouse models of Parkinson's disease.


Introduction

Parkinson's disease (PD) is a chronic, progressive neurological disease that affects ∼1% of the population over the age of 65.1 It is characterized by progressive impairment in motor function caused by gradual loss of COMPOUND LINKS

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dopamine
(DA) producing neurons in ventral midbrain and concomitant loss of DA input into the striatum.2,3 The loss of DA input leads to dysregulation of striatal function and the classic motor symptoms of PD, such as resting tremor, muscular rigidity and bradykinesia. The impairment of motor function is often accompanied by anxiety, depression and cognitive impairment.

Most treatments for PD focus on restoring COMPOUND LINKS

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dopamine
signaling to reduce the severity of the motor symptoms.4COMPOUND LINKS

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Dopamine
replacement therapy using L-DOPA, the precursor to COMPOUND LINKS

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dopamine
, remains the gold-standard treatment for PD. Although the dopamine targeted therapies work well to address the motor impairments of PD, they all produce undesirable side effects (dyskinesia, hallucinations, on–off effects) that become more severe with continued treatment. This type of therapy has reduced efficacy as the disease progresses and does not address the co-morbidities associated with PD like mood disturbances, postural instability and cognitive impairment.

As a result of these limitations many drug companies have sought non-dopamine based therapies for PD. One approach that has received considerable attention is modulation of COMPOUND LINKS

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adenosine
receptors.5COMPOUND LINKS

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Adenosine
is a neuromodulator that coordinates responses to COMPOUND LINKS

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dopamine
and other neurotransmitters in areas of the brain that are responsible for motor function, learning and memory.6COMPOUND LINKS

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Adenosine
is comprised of four distinct sub-types designated A1, A2A, A2B, and A3.7 Both A2A and A1 receptors are highly expressed in the brain, particularly striatum, while A2B and A3 receptors are not.8 In the striatum A2A receptors co-localize and physically associate with COMPOUND LINKS

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dopamine
D2 receptors.2,3A2A and D2 receptors have opposing effects on adenylate cyclase and cAMP production in cells such that A2A receptor antagonists enhance D2 dependent signaling. Of importance to PD, pharmacological blockade of A2A receptors had shown dramatic beneficial effects in preclinical animal models of PD. In fact, several selective A2A antagonists have advanced into clinical development.9

There have been several reports published suggesting that COMPOUND LINKS

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adenosine
A1antagonists may improve learning and memory.10 This would suggest that a dual A2A/A1antagonist may offer improved benefit to PD patients as it is known that cognitive deficiencies increase as the disease progresses.11 Unfortunately, it is unknown what balance of A1vs.A2A antagonism would be ideal for PD patient benefit. We would like to report herein a novel series of thieno[2,3-d]pyrimidines as selective A2A and dual A2A/A1receptor antagonists for the potential treatment of PD.

Results and discussion

Initial lead generation, through a de novo approach, led to a series of aminomethyl thieno[2,3-d]pyrimidines that were potent adenosine A2A receptor antagonist with varying degrees of selectivity against COMPOUND LINKS

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adenosine
A1 receptors and are represented generically by structure 4 (Scheme 1). The compounds were synthesized starting from the commercially available aminonitrile 1 and reacting with various aryl and heteroaryl nitriles by heating with a catalytic amount of t-BuOK in COMPOUND LINKS

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dioxane
.12 The resulting aminopyrimidine 2 was oxidized to the corresponding aldehyde 3 using SeO2 (Path 1), that underwent reductive amination with a variety of amines to give the target compound 4. An alternative route (Path 2) was developed to prepare the target compounds where the aminopyrimidine 2 was protected using excess (Boc)2O in the presence of COMPOUND LINKS

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4-dimethylamino pyridine
(COMPOUND LINKS

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DMAP
) to give compound 5. Radical bromination of the methyl group using COMPOUND LINKS

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N-bromosuccinimide
(NBS) gave the corresponding bromide 6. The Boc protecting groups were removed with TFA and the resulting bromide was alkylated with a variety of amines to provide the target compounds. This route proved to be helpful for incorporating hindered secondary amines.

Synthesis of aminomethyl substituted thieno[2,3-d]pyrimidines.
Scheme 1 Synthesis of aminomethyl substituted thieno[2,3-d]pyrimidines.

A third synthetic route was also used to install aryl and heteroaryl substituents that contained methyl groups to avoid mixtures of oxidized or brominated products that would be obtained from the paths outlined in Scheme 1. The aminonitrile 7 was condensed with a variety of heteroaryl nitriles to afford an intermediate aminopyrimidine that was brominated using NBS to afford 8 (Scheme 2). Bromide 8 was converted to the corresponding vinyl intermediate 9 under standard Suzuki conditions using the corresponding vinyl boronic ester. Dihydroxylation using AD-mix followed by oxidation with COMPOUND LINKS

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periodic acid
(HIO4) afforded the aldehyde 3. Reductive amination with a variety of amines affords the target compounds 4.


Synthesis of compounds where R1 contains a methyl group.
Scheme 2 Synthesis of compounds where R1 contains a methyl group.

We started exploring a variety of amines by keeping the right hand portion of the molecule as 2-substituted furan or 2-substituted-5-methylfuran, two heterocycles that were identified that gave good in vitro potency (Table 1). The acyclic amines (10–13) showed modest functional activity against A2A but weak activity for A1 receptors. Cyclopropyl amine 12 did not show any activity in reversing COMPOUND LINKS

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haloperidol
induced catalepsy in mice, which was our primary in vivo screening model.13 Greater than 50% reversal of catalepsy indicates a positive result in the catalepsy model (see Experimental section for more details). The very basic pyrrolidines and COMPOUND LINKS

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piperidine
analogues (14–16) showed slightly increased activity for A2Ain vitro, but showed no effect in vivo reversing COMPOUND LINKS

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haloperidol
induced catalepsy in mice at 10 mg kg−1, p.o. Interestingly, the less basic COMPOUND LINKS

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morpholine
analogues 18 and 19 did show good in vivo activity with 18 having an ED50 = 1.3 mg kg−1. The calculated pKa's14 for the pyrrolidine 14 and piperidine 16 were 8.2 and 8.5, respectively, while the less basic COMPOUND LINKS

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morpholine
analogue 18 has a calculated pKa of 6.5. With a possible trend being identified our focus was to examine the in vitro and in vivo activity of analogues containing less basic amino substituents. We thought that this approach would increase log P values and potentially increase blood brain barrier (BBB) penetration which would increase in vivo activity.

Table 1 A2A and A1 activity for COMPOUND LINKS

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furan
and COMPOUND LINKS

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5-methylfuran
analogs

Compound NRR′ R A2A Ki/nM A1Ki/nM Mouse catalepsy activitya,b Compound NRR′ R A2A Ki/nM A1Ki/nM Mouse catalepsy activitya,b
a Results are reported as an ED50, active/not active at a single dose or (—) for not tested. b Active is at least 50% reversal of cataleptic activity.
10 H 140 ± 5 3550 ± 409 21 H 6.5 ± 0.9 150 ± 9 ED50 < 3.0 mg kg−1
11 H 55.5 ± 7.4 2130 ± 176 22 H 19.7 ± 2.9 740 ± 69 ED50 < 1.0 mg kg−1
12 H 36.0 ± 3.4 1890 ± 96 Not active at 10 mg kg−1 23 H 49.6 ± 4.3 2230 ± 208 Active at 10 mg kg−1
13 H 170 ± 13 2480 ± 100 24 H 6.6 ± 1.0 290 ± 42 ED50 < 1.0 mg kg−1
14 H 28.1 ± 3.7 6430 ± 860 Not active at 10 mg kg−1 25 H 5.3 ± 0.7 100 ± 16 Active at 10 mg kg−1
15 Me 26.1 ± 2.2 620 ± 96 Not active at 10 mg kg−1 26 H 300 ± 8 4000 ± 365
16 Me 28.8 ± 8.1 610 ± 123 Not active at 10 mg kg−1 27 H 230 ± 17 2720 ± 188
17 H 27.6 ± 1.8 1170 ± 304 28 H 9.2 ± 2.1 369 ± 66 ED50 = 3.2 mg kg−1
18 H 29.0 ± 2.0 1680 ± 177 ED50 = 1.3 mg kg−1 29 H 7.2 ± 1.0 290 ± 10 ED50 < 0.1 mg kg−1
19 Me 32.8 ± 3.9 1050 ± 88 Active at 10 mg kg−1 30 H 10.3 ± 2.6 1340 ± 102 Not active at 10 mg kg−1
20 Me 200 ± 21 3320 ± 131 31 H 8.7 ± 1.3 1240 ± 307 ED50 = 10.0 mg kg−1


The unsaturated piperidine 21 (calc. pKa = 7.2) was significantly less basic than the saturated compound 16 (calc. pKa = 8.5) and resulted in a 4-fold increase in A2A activity, but more importantly was very potent in vivo having an ED50 < 3.0 mg kg−1, p.o (Table 1). The fluorinated piperidines 22–24 also showed excellent in vitro and in vivo activity. The calculated pKa's for the fluorinated piperidines 22–24 are 7.0, 5.5, and 4.7, respectively, and are also significantly lower than the pKa's for the corresponding pyrrolidine and COMPOUND LINKS

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piperidine
analogues. The cis-2,6-dimethylpiperidine 25 (calc. pKa = 8.5)15 proved to be the most potent group for both A2A and A1 activity while maintaining activity in vivo at 10 mg kg−1. The COMPOUND LINKS

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thiomorpholine
analog 28 (calc. pKa = 6.7) also showed good in vitro potency and had an in vivoED50 = 3.2 mg kg−1. The pyrroline 29 (calc. pKa = 6.8) was the most potent compound in vivo having an ED50 < 0.1 mg kg−1. The fluorinated pyrrolidines 30 (calc. pKa = 5.9) and 31 (calc. pKa = 3.3) maintained good activity in vitro against A2A but were less effective in vivo compared to the fluorinated piperidines 22 and 24 despite having comparable pKa values.

With a good handle on the amino substituents we wanted to further explore the scope of the furan substituent. Although the mono-substituted furans showed excellent in vitro and in vivo activity, mono-substituted furans are potential metabolic liabilities. The COMPOUND LINKS

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furan
replacement strategy has also been reported in other chemical scaffolds of A2A receptor antagonists.16 In addition, several of the compounds from Table 1 had low metabolic stability in human liver microsomes (HLM) and short in vivo half-lives in rodent. Therefore, the alkyl substituent on the furan was extended from methyl to ethyl, isopropyl, cyclopropyl and CHF2 (32–42), and chloro- and bromo-substituted furans (43–53) were also prepared (Table 2). The majority of aryl and heteroaryl nitriles were commercially available except propyl, cyclopropyl and CHF2 substituted 2-furanonitriles. The substituted COMPOUND LINKS

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furan
nitriles that were not available were synthesized via the corresponding bromide 51 as indicated in Scheme 3.12,17 The bromide 54, prepared viaScheme 1, was converted to the alkyl substituent, shown in 55, via a Suzuki or Negishi reaction using the appropriate boronic acid or alkyl zinc reagents. The aldehyde 56 was converted to the corresponding difluoride 57 using COMPOUND LINKS

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(diethylamino)sulfur trifluoride
(DAST) which was incorporated into the thienopyrimidines as outlined in Scheme 1.12

Table 2 A2A and A1 activity for 5-substituted furan analogs

Compound NRR′ R A2A Ki/nM A1Ki/nM Mouse catalepsy activitya,b Compound NRR′ R A2A Ki/nM A1Ki/nM Mouse catalepsy activitya,b
a Results are reported as an ED50, active/not active at a single dose or (—) for not tested. b Active is at least 50% reversal of cataleptic activity.
32 Et 78.9 ± 10.1 >610 43 Cl 22.2 ±.3.5 710 ± 55 Not active at 10 mg kg−1
33 Et 25.2 ± 4.4 190 ± 17 44 Cl 33.4 ± 3.7 1420 ± 175 Active at 10 mg kg−1
34 i-Pr >1360 >600 45 Cl 45.4 ± 7.4 640 ± 34
35 i-Pr 17.0 ± 2.4 140 ± 17 Not active at 10 mg kg−1 46 Cl 36.7.± 3.5 1080 ± 293 Active at 10 mg kg−1
36 960 ± 78 >1100 47 Cl 9.1 ± 1.2 188 ± 27 Active at 10 mg kg−1
37 110 ± 10 330 ± 36 48 Cl 11.0 ± 0.8 190 ± 18 active at 10 mg kg−1
38 CHF2 30.8 ± 3.7 2700 ± 220 Not active at 10 mg kg−1 49 Cl 10.0 ± 0.5 780 ± 100 Not active at 10 mg kg−1
39 CHF2 28.6 ± 2.0 730 ± 105 Not active at 10 mg kg−1 50 Cl 15.9 ± 2.9 245 ± 14
40 CHF2 42.2 ± 6.7 1670 ± 354 51 Br 22.5 ± 4.5 710 ± 76 Not active at 10 mg kg−1
41 CHF2 610 ± 33 17[thin space (1/6-em)]820 ± 798 52 Br 30.0 ± 4.0 725 ± 102 Active at 10 mg kg−1
42 CHF2 43.2 ± 6.2 2100 ± 99 53 Br 12.1 ± 3.1 40.2 ± 20.2



Synthesis of substituted furans.
Scheme 3 Synthesis of substituted furans.

We chose COMPOUND LINKS

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morpholine
and COMPOUND LINKS

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cis-2,6-dimethylpiperidine
as the amines to explore the new substitutions and it was clear that the cis-2,6-dimethylpiperidine analogues are generally more potent than their corresponding COMPOUND LINKS

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morpholine
analogues (comparing 32–39), but they are still less potent than the corresponding unsubstituted furan 25 (Table 1). Unfortunately, this was also true when comparing the in vivo activity of 25 and 35, or comparing 18 and 38, where 18 is much more active in reversing catalepsy in mice. This decrease in activity in vivo for 35 and 39 could possibly be explained by the 3–5 fold decrease in A2A functional activity compared to the corresponding unsubstituted analogue 25. However, the inactivity of 38 and the potent activity of the unsubstituted analogue 18 cannot be explained similarly and is surprising considering the comparable in vitro activity, 30.8 and 29.0 nM, respectively.

We also explored chloro- and bromo-substituted furans in compounds 43–53. In general they all maintained good in vitro activity for A2A, but also had decreased activity in vivo for those tested against their corresponding unsubstituted COMPOUND LINKS

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furan
analogs. The pyrrolidine 43 had no activity in vivo at 10 mg kg−1 which was consistent with the results obtained from 14 and 15. The piperidines 46–48 and morpholine 52 were all active in vivo at 10 mg kg−1, p.o. Interestingly, the pyrroline 49 was not active at 10 mg kg−1 which was in stark contrast to the des-Cl analogue 29 which had an ED50 < 0.1 mg kg−1. The general decrease in potency in vivo for the alkyl, chloro- and bromo-substituted furan compounds is surprising given the similar in vitro potencies, but was consistent for all compounds.

Next we explored replacement of the furan with various 5-membered heterocycles (Table 3). The 2-substituted oxazoles 58–60 were significantly less potent (12–40 fold) in vitro against A2A than their corresponding 2-substituted furan analogs 18, 29, and 21, respectively. This was much to our surprise as the replacement of just one atom resulted in such a dramatic loss in activity. Likewise the thiazole 61, methyl thiazoles 62 and 63, isoxazoles 64 and 65, thiophenes 66 and 67, and oxazoles 68 and 69 all had similar decreases in A2A activity compared to their corresponding COMPOUND LINKS

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furan
analogues. Even the benzofuran 70 had significantly decreased in vitro activity. This was somewhat discouraging that the furan was an ideal substituent and could not be readily replaced with other 5-membered heterocycles.

Table 3 A2A and A1 activity for 5-membered heterocyclic analogs

Compound NRR′ Het A2A Ki/nM A1Ki/nM
58 360 ± 28 3250 ± 310
59 240 ± 22 3890 ± 267
60 240 ± 13 2960 ± 403
61 250 ± 17 2730 ± 167
62 210 ± 12 >930
63 89.1 ± 8.6 300 ± 24
64 1010 ± 30 680 ± 30
65 130 ± 7 500 ± 19
66 110 ± 7 >10[thin space (1/6-em)]000
67 125 ± 5 1020 ± 220
68 238 ± 12 3895 ± 352
69 240 ± 10 2964 ± 311
70 350 ± 17 630 ± 79


After exploring various heterocyclic replacements for the furan, we decided to explore aryl substituents (Table 4). The phenyl substituted analog 71 was a starting point for us despite the modest A2A activity. Interestingly, fluorine or chlorine substituted in the meta-position gave nearly a 10-fold increase in A2A activity. Further exploration at the meta-position revealed that a cyano group in that position was ideal and gave the most potent compounds (76–84) against A2A. The less basic amines gave the best activity for A2A similar to compounds having the furan substituent. Very basic groups like pyrrolidine 83 were not well tolerated and resulted in no activity against A2A although it had decent A1 activity at 130 nM. The less basic compounds 77, 79 and 80 all had very potent activity in vivo ED50's < 1 mg kg−1. Moving the cyano group to the ortho (85) or para (86–88) positions resulted in decreased in vitro activity against A2A. Other electron withdrawing groups at the meta position like CF3, SO2Me, NO2, and CONMe2 decreased A2A activity significantly. A methoxy group (96–98) in the meta position had modest activity for A2A but still less than that obtained from the cyano group.

Table 4 A2A and A1 activity for aryl substituted analogs

Compound NR1R2 R3 A2AKi/nM A1Ki/nM Mouse catalepsy activitya,b Compound NR1R2 R3 A2A Ki/nM A1Ki/nM Mouse catalepsy activitya,b
a Results are reported as an ED50, active/not active at a single dose or (—) for not tested. b Active is at least 50% reversal of cataleptic activity.
71 H 995 ± 57 >5000 85 2–CN 1030 ± 77 5050 ± 333
72 3-F 110 ± 8 620 ± 29 86 4–CN 390 ± 25 8430 ± 664
73 3-Cl 120 ± 8 790 ± 50 87 4–CN 180 ± 20 1630 ± 219
74 3,5-diF 350 ± 29 2300 ± 235 88 4–CN 79.2 ± 10.2 2350 ± 165
75 3,4-diF 360 ± 45 2890 ± 314 89 3–CF3 1070 ± 86 2960 ± 344
76 3–CN 83.5 ± 8.8 2070 ± 310 90 3–CF3 >10[thin space (1/6-em)]000 3030 ± 277
77 3–CN 36.1 ± 5.4 1010 ± 87 ED50 < 1.0 mg kg−1 91 4–CF3 >10[thin space (1/6-em)]000 3560 ± 423
78 3–CN 64.6 ± 4.4 460 ± 67 92 2–CF3 >10[thin space (1/6-em)]000 >10[thin space (1/6-em)]000
79 3–CN 54.4 ± 6.1 2950 ± 355 ED50 < 1.0 mg kg−1 93 3–SO2Me >10[thin space (1/6-em)]000 >10[thin space (1/6-em)]000
80 3–CN 39.0 ± 4.0 840 ± 36 ED50 < 1.0 mg kg−1 94 3–NO2 3760 ± 309 >10[thin space (1/6-em)]000
81 3–CN 50.9 ± 2.3 980 ± 80 Active at 10 mg kg−1 95 3-CONMe2 2250 ± 297 > 10[thin space (1/6-em)]000
82 3–CN 13.2 ± 3.0 210 ± 52 Active at 10 mg kg−1 96 3-OMe 300 ±.31 3220 ± 200
83 3–CN >10[thin space (1/6-em)]000 130 ± 18 97 3-OMe 370 ± 23 2990 ± 189
84 3–CN 150 ± 13 1070 ± 60 98 3-OMe 97.7 ± 12.6 1810 ± 323


Conclusions

A novel series of aminomethyl substituted thieno[2,3-d]pyrimidines was developed as potent adenosine A2A receptor antagonists. The 2-substituted furans and 2-substituted-5-methyl furans were ideal groups for optimal potency in vitro and in vivo. Investigation of a wide variety of cyclic and acyclic amines revealed some interesting SAR in vivo. The less basic amino substituents in general gave slightly more potent in vitro activity, but proved to be essential for potent in vivo activity. To expand the SAR we chose a few of the better amino substituents to keep constant while we tried to modify the furan portion of the molecule. Replacement of COMPOUND LINKS

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furan
with various 5-membered heterocycles significantly decreased A2A activity. Surprisingly the furan could be replaced with meta-substituted phenyl groups and maintain good in vitro activity against A2A. The 3-cyanophenyl substituent proved to be the ideal group for in vitro A2A activity as well as in vivo activity.

Experimental

Reagent grade chemicals and solvents were purchased from commercial suppliers and used without further purification. All chromatography was performed on COMPOUND LINKS

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silica
gel and were carried out on a combi-flash system equipped with an automated fraction collector. High resolution MS was performed on a JEOL Accutof JMS-T100 LC with a DART CE ionization source operating in the positive mode. All proton nuclear magnetic resonance spectra were determined using a 300 or 400 MHz Bruker NMR with the appropriate internal standards, and chemical shifts are reported in ppm relative to TMS. Defined J values are reported in Hz. All final compounds were purified to ≥95% purity as determined by Agilent 1100 series high performance liquid chromatography (HPLC) with UV detection at 254 nm using the following method: Supelcosil ABZ + PLUS, 3.3 cm × 2.1 cm, 11 min; 1.2 mL min−1 flow rate; 5–95% 0.1% TFA in CH3CN/0.1% TFA in COMPOUND LINKS

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H2O
.

Compound 18: 2-furan-2-yl-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

Solid COMPOUND LINKS

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potassium-tert-butoxide
(325 mg, 2.9 mmol) was added to a dioxane solution (7 mL) of COMPOUND LINKS

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2-amino-5-methyl-thiophene-3-carbonitrile
(2.0 g, 14.5 mmol) and COMPOUND LINKS

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furan-2-carbonitrile
(1.3 g, 14.5 mmol). The resulting mixture was heated in an oil bath at 130 °C for 10 minutes. The dark slurry was cooled to room temperature, diluted with THF, and dry packed onto COMPOUND LINKS

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silica
gel. The material was then purified viacolumn chromatography to give 1.6 g of 2-furan-2-yl-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine.

Solid SeO2 (4.3 g, 39.0 mmol) was added to a dioxane (50 mL)/COMPOUND LINKS

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water
(0.5 mL) suspension of 2-furan-2-yl-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine (3.0 g, 13.0 mmol) and the mixture was heated to 100 °C. After 20 h the mixture was filtered hot and diluted with EtOAc. The organic phase was washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4) and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 1.7 g of 4-amino-2-(furan-2-yl)thieno[2,3-d]pyrimidine-6-carbaldehyde.

Solid NaBH(OAc)3 (173 mg, 0.82 mmol) was added to a THF solution (4 mL) of 4-amino-2-(furan-2-yl)thieno[2,3-d]pyrimidine-6-carbaldehyde (100 mg, 0.41 mmol) and COMPOUND LINKS

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morpholine
(72 μL, 0.82 mmol) and the mixture was heated to 45 °C. After 16 h the mixture was cooled, diluted with EtOAc, washed with saturated aqueous NaHCO3, COMPOUND LINKS

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water
and brine, dried (Na2SO4), and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 90 mg of 2-furan-2-yl-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine 18. 1H NMR (COMPOUND LINKS

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DMSO-d6
, 300 MHz): δ = 7.81 (1H, s), 7.50 (2H, s), 7.41 (1H, s), 7.11 (1H, d, J 3.4), 6.51–6.72 (1H, m), 3.71 (2H, s), 3.60 (4H, t, J 4.3), 2.44 (4H, br. s); MSm/z 317 (M + H). HRMS calcd for C15H16N4O2S 316.0994, found 317.1051 (M+ + H)

The procedure used to prepare compound 18 was also used to prepare the following compounds with the appropriate amine substituent. Also, the corresponding nitrile replacement for the furan-2-carbonitrile is specified where appropriate.

Compound 10: 6-dimethylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.59 (1H, s), 7.20–7.33 (1H, m), 7.12 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.82 (2H, br. s), 3.78 (2H, s), 2.38 (6H, s); MSm/z 275 (M + H).

Compound 11: 6-diethylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.59 (1H, dd, J 1.7, 0.9), 7.25 (1H, dd, J 3.5, 0.8), 6.96 (1H, s), 6.54 (1H, dd, J 3.4, 1.7), 5.28 (2H, br. s), 3.83 (2H, s), 2.61 (4H, q, J 7.2), 1.08 (6H, t, J 7.2); MSm/z 303 (M + H).

Compound 12: 6-cyclopropylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.60 (1H, d, J 0.8), 7.25 (1H, s), 6.99 (1H, s), 6.55 (1H, dd, J 3.5, 1.8), 5.42 (2H, br. s), 4.09 (2H, s), 2.15–2.32 (1H, m), 0.33–0.56 (4H, m); MSm/z 287 (M + H).

Compound 13: 6-cyclohexylaminomethyl-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.59 (1H, d, J 0.8), 7.24 (1H, d, J 3.4), 7.06 (1H, s), 6.54 (1H, dd, J 3.4, 1.7), 5.44 (2H, br. s), 4.05–4.13 (2H, m), 3.49 (1H, s), 2.52–2.66 (1H, m), 2.06 (2H, s), 1.73 (2H, br. s), 1.06–1.35 (6H, m); MSm/z 329 (M + H).

Compound 14: 2-furan-2-yl-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.59 (1H, s), 7.25 (1H, d, J 3.3), 7.06 (1H, s), 6.54 (1H, dd, J 3.3, 1.8), 5.44 (2H, br. s), 3.92 (2H, s), 2.61–2.74 (4H, m), 1.85 (4H, dt, J 6.8, 3.3); MSm/z 301 (M + H).

Compound 17: 6-(azepan-1-ylmethyl)-2-(furan-2-yl)thieno[2,3-d]pyrimidin-4-amine

MS m/z 329 (M + H).

Compound 20: 6-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-2-(5-methyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.06–7.23 (4H, m), 6.95–7.04 (2H, m), 6.14 (1H, dd, J 3.3, 0.8), 5.35 (2H, br. s), 3.91 (2H, s), 3.74 (2H, s), 2.91 (3H, t, J 5.3), 2.82 (2H, t, J 5.5); MSm/z 377 (M + H).

Compound 21: 6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.60 (1H, s), 7.25 (1H, s), 7.00 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.77 (1H, br. s), 5.69 (1H, br. s), 5.25 (2H, br. s), 3.83 (2H, s), 2.99–3.16 (2H, m), 2.64 (2H, t, J 5.7), 2.12–2.26 (2H, m); MSm/z 313 (M + H).

Compound 22: 6-(4-fluoro-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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DMSO-d6
): δH 7.93 (1H, br. s), 7.72 (1H, s), 7.24 (1H, d, J 3.4), 6.70 (1H, d, J 3.4), 4.64 (2H, br. s), 3.35 (1H, m), 3.16 (4H, br. s), 2.08 (4H, br. s); MSm/z 333 (M + H).

Compound 23: 6-(4,4-difluoro-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.59 (1H, s), 7.26 (1H, d, J 3.4), 6.96 (1H, s), 6.55 (1H, dd, J 3.4, 1.5), 5.46 (2H, s), 3.78 (2H, s), 2.63 (4H, t, J 5.5), 1.91–2.11 (4H, m); MSm/z 351 (M + H).

Compound 24: 6-(3,3-difluoro-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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acetone-d6
): δH 7.70 (1H, s), 7.36 (1H, s), 7.16 (1H, d, J 3.4), 6.79 (2H, br. s), 6.59 (1H, dd, J 3.4, 1.9), 3.74 (2H, s), 3.63 (2H, br. s), 2.13–2.31 (2H, m), 1.83 (2H, dd, J 12.6, 3.6), 1.46–1.65 (2H, m); MSm/z 351 (M + H). HRMS calcd for C16H16F2N4OS 350.1013, found 350.1066 (M+ + H).

Compound 25: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.59 (1H, s), 7.25 (1H, d, J 3.4), 6.95 (1H, s), 6.55 (1H, dd, J 3.4, 1.5), 5.32 (2H, br. s) 4.11 (2H, s), 2.56 (2H, br. s), 1.76 (2H, br. s), 1.52–1.70 (4H, m), 1.21 (3H, s), 1.19 (3H, s); MSm/z 343 (M + H). HRMS calcd for C18H22N4OS 342.1514, found 343.1621 (M+ + H).

Compound 26: 1-(4-amino-2-furan-2-yl-thieno[2,3-d]pyrimidin-6-ylmethyl)-piperidin-4-ol

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.60 (1H, s), 7.25 (1H, s), 6.99 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.33 (2H, br. s), 3.85 (2H, s), 2.75 (2H, t, J 11.1), 2.56 (2H, t, J 5.3), 1.70–1.99 (5H, m); MSm/z 331 (M + H).

Compound 27: 1-(4-amino-2-furan-2-yl-thieno[2,3-d]pyrimidin-6-ylmethyl)-piperidin-4-one

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.60 (1H, s), 7.26 (1H, s), 7.00 (1H, s), 6.55 (1H, dd, J 3.4, 1.5), 5.47 (2H, s), 3.86 (2H, s), 2.84 (4H, t, J 6.0), 2.49 (4H, t, J 6.0); MSm/z 329 (M + H).

Compound 28: 2-(furan-2-yl)-6-(thiomorpholinomethyl)thieno[2,3-d]pyrimidin-4-amine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.58 (1H, s), 7.21–7.32 (1H, m), 7.12 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.79 (2H, br. s), 3.80 (2H, s), 2.75–2.84 (4H, m), 2.67–2.73 (4H, m); MSm/z 333 (M + H).

Compound 29: 6-((2,5-dihydro-1H-pyrrol-1-yl)methyl)-2-(furan-2-yl)thieno[2,3-d]pyrimidin-4-amine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.59 (1H, s), 7.20–7.33 (1H, m), 7.12 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.82 (2H, s), 5.77 (2H, br. s), 3.78 (2H, s), 3.62 (4H, m); MSm/z 299 (M + H).

Compound 30: 6-(3-fluoro-pyrrolidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.60 (1H, s), 7.25 (1H, d, J 3.4), 6.99 (1H, s), 6.55 (1H, dd, J 3.4, 1.9), 5.34 (2H, br. s), 5.20–5.32 (1H, m), 3.92 (2H, s), 2.93–2.98 (1H, m), 2.82–2.94 (2H, m), 2.57–2.68 (1H, m), 2.06–2.27 (2H, m); MSm/z 319 (M + H).

Compound 31: 6-(3,3-difluoro-pyrrolidin-1-ylmethyl)-2-furan-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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DMSO-d6
): δH 7.82 (1H, s), 7.54 (2H, s), 7.42 (1H, s), 7.12 (1H, d, J 3.4 Hz), 6.63 (1H, dd, J 3.4, 1.9), 3.88 (2H, s), 2.97 (2H, t, J 13.4), 2.80 (2H, t, J 7.0), 2.13–2.40 (2H, m); MSm/z 337 (M + H).

Compound 43: 2-(5-chloro-furan-2-yl)-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Chlorofuran-2-carbonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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DMSO-d6
): δH 7.65 (1H br. s), 7.18 (1H, d, J 3.8), 6.67 (1H, d, J 3.4), 3.99 (2H, br. s), 2.68 (4H, m), 1.66–1.89 (4H, m); MSm/z 335 (M + H).

Compound 44: 6-azepan-1-ylmethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Chlorofuran-2-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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DMSO-d6
): δH 7.74 (1H, s), 7.24 (1H, br. s), 6.79 (1H, s), 4.61 (2H, br. s), 4.50 (2H, br. s), 3.38 (2H, br. s), 3.13 (4H, br. s), 1.84 (4H, br. s), 1.63 (4H, br. s); MSm/z 363 (M + H).

Compound 46: 2-(5-chloro-furan-2-yl)-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Chlorofuran-2-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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DMSO-d6
): δH 7.72 (1H, s), 7.24 (1H, d, J 3.4), 6.70 (1H, d, J 3.4), 4.64 (2H, br. s), 3.35 (1H, br. s), 3.16 (4H, br. s), 2.08 ppm (4H, br. s); MSm/z 367 (M + H).

Compound 48: 2-(5-chloro-furan-2-yl)-6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Chlorofuran-2-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.22 (1H, d, J 3.4), 7.00 (1H, s), 6.33 (1H, d, J 3.4 Hz), 5.73–5.85 (1H, m), 5.60–5.73 (1H, m), 5.29 (2H, br. s), 3.83 (2H, s), 3.04–3.15 (2H, m), 2.64 (2H, t, J 5.8), 2.14–2.25 (2H, m); MSm/z 347 (M + H).

Compound 49: 2-(5-chloro-furan-2-yl)-6-(2,5-dihydro-pyrrol-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Chlorofuran-2-carbonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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DMSO-d6
): δH 7.45 (1H, s), 7.19 (1H, d, J 3.0), 6.85 (2H, s), 6.67 (1H, d, J 3.0), 5.37 (2H, s), 4.28 (6H, br. s); MSm/z 333 (M + H).

Compound 58: 6-morpholin-4-ylmethyl-2-oxazol-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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Oxazole-2-carbonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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methanol-d4
) δH 8.10 (1H, s), 7.41 (1H, s), 7.35 (1H, s), 3.79 (2H, s), 3.68–3.73 (4H, m), 2.49–2.59 (4H, m); MSm/z 318 (M + H).

Compound 59: 6-((2,5-dihydro-1H-pyrrol-1-yl)methyl)-2-(oxazol-2-yl)thieno[2,3-d]pyrimidin-4-amine

COMPOUND LINKS

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Oxazole-2-carbonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. MSm/z 300 (M + H).

Compound 60: 6-((5,6-dihydropyridin-1(2H)-yl)methyl)-2-(oxazol-2-yl)thieno[2,3-d]pyrimidin-4-amine

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Oxazole-2-carbonitrile
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furan-2-carbonitrile
. MSm/z 314 (M + H).

Compound 61: 6-morpholin-4-ylmethyl-2-thiazol-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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Thiazole-2-carbonitrile
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furan-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.99 (1H, d, J 3.2), 7.48 (1H, d, J 3.2), 7.03 (1H, s), 5.49 (2H, br. s), 3.66–3.80 (6H, m), 2.46–2.63 (6H, m); MSm/z 334 (M + H).

Compound 64: 2-isoxazol-3-yl-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

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Isoxazole-3-carbonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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acetone-d6
): δ = 8.68 (1H, d, J 1.5), 7.33 (1H, s), 6.83–6.91 (3H, m), 3.66 (2H, s), 3.46–3.56 (4H, m), 2.31–2.43 (4H, m); MSm/z 318 (M + H).

Compound 65: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-isoxazol-3-yl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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Isoxazole-3-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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acetone-d6
): δH 8.67 (1H, d, J 1.9), 7.30 (1H, s), 6.88 (1H, d, J 1.5), 6.82 (2H, br. s), 3.97 (2H, s), 2.33–2.51 (2H, m), 1.42–1.56 (2H, m), 1.10–1.26 (4H, m), 1.03 (6H, d, J 6.0); MSm/z 344 (M + H).

Compound 66: 6-pyrrolidin-1-ylmethyl-2-thiophen-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

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Thiophene-2-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.95 (1H, dd, J 3.7, 1.2), 7.41 (1H, dd, J 5.0, 1.2), 7.11 (2H, dd, J 5.0, 3.7), 5.33 (2H, br. s), 3.95 (2H, s), 2.71 (4H, br. s), 1.86 (4H, dt, J 6.7, 3.2); MSm/z 317 (M + H).

Compound 67: 6-morpholin-4-ylmethyl-2-thiophen-2-yl-thieno[2,3-d]pyrimidin-4-ylamine

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Thiophene-2-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.95 (1H, dd, J 3.7, 1.2), 7.41 (1H, dd, J 5.0, 1.2), 7.12 (1H, dd, J 5.0, 3.7), 6.96 (1H, s), 5.18 (2H, br. s), 3.65–3.85 (6H, m), 2.47–2.65 (4H, m); MSm/z 333 (M + H).

Compound 68: 6-(2,5-dihydro-pyrrol-1-ylmethyl)-2-oxazol-4-yl-thieno[2,3-d]pyrimidin-4-ylamine

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Oxazole-4-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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methanol-d4
) δH 8.51 (1H, s), 8.28 (1H, s), 7.34 (1H, s), 5.83 (2H, s), 4.13 (2H, s), 3.63 (4H, s); MSm/z 300 (M + H).

Compound 69: 6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-2-oxazol-4-yl-thieno[2,3-d]pyrimidin-4-ylamine

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Oxazole-4-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.41 (1H, s), 7.98 (1H, s), 7.04 (1H, s), 5.74–5.83 (1H, m), 5.64–5.71 (1H, m), 5.44 (2H, br s), 3.85 (2H, s), 3.06–3.12 (2H, m), 2.65 (2H, t, J 5.7), 2.15–2.24 (2H, m); MSm/z 314 (M + H).

Compound 70: 2-benzofuran-2-yl-6-(4-fluoropiperdin-1-ylmethyl)thieno[2,3-d]pyrimidin-4-ylamine

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Benzofuran-2-carbonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.45–7.74 (3H, m), 7.30 (1H, m), 7.20 (1H, m), 6.94 (1H, br. s), 5.28 (2H, br. s), 4.66 (1H, d, JHF 48.6), 4.46–4.67 (1H, m), 3.71 (2H, s), 2.38–2.66 (4H, m), 1.72–1.94 (4H, m); MSm/z 383 (M + H).

Compound 71: 6-(morpholinomethyl)-2-phenylthieno[2,3-d]pyrimidin-4-amine

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Benzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. MSm/z 327 (M + H).

Compound 72: 2-(3-fluoro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

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3-Fluorobenzonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 8.24 (1H, d, J 7.9 Hz), 8.15 (1H, dt, J 10.5, 2.1), 7.44 (1H, td, J 8.0, 5.8), 7.07–7.22 (1H, m), 7.03 (1H, s), 5.23 (2H, br. s), 3.69–3.84 (6H, m), 2.51–2.63 (4H, m); MSm/z 345 (M + H).

Compound 73: 2-(3-chloro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

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3-Chlorobenzonitrile
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furan-2-carbonitrile
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chloroform-d
): δH 8.44 (1H, s), 8.31 (1H, dt, J 6.2, 2.2), 7.33–7.47 (2H, m), 6.99 (1H, s), 5.25 (2H, br. s), 3.67–3.85 (6H, m), 2.44–2.63 (4H, m); MSm/z 361 (M + H).

Compound 74: 2-(3,5-difluoro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

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3,5-Difluorobenzonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.87–8.05 (2H, m), 7.00 (1H, s), 6.87 (1H, tt, J 8.7, 2.4), 5.23 (2H, br. s), 3.59–3.83 (6H, m), 2.41–2.67 (4H, m); MSm/z 363 (M + H).

Compound 75: 2-(3,4-difluoro-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

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3,4-Difluorobenzonitrile
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furan-2-carbonitrile
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chloroform-d
): δH 8.28 (1H, ddd, J 11.9, 7.9, 2.1), 8.20 (1H, ddd, J 8.7, 4.5, 1.5), 7.15–7.25 (1H, m), 6.99 (1H, s), 5.19 (2H, br. s), 3.52–3.88 (6H, m), 2.46–2.62 (4H, m); MSm/z 363 (M + H).

Compound 76: 3-[4-amino-6-(2,5-dihydro-pyrrol-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,3-Dicyanobenzene
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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DMSO-d6
) δH 8.60–8.69 (2H, m), 7.91–7.99 (1H, m), 7.70 (1H, t, J 7.7), 7.60 (2H, br. s), 7.47 (1H, s), 5.83 (2H, s), 4.03 (2H, s), 3.52 (4H, s); MSm/z 334 (M + H).

Compound 77: 3-(4-amino-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-2-yl)-benzonitrile

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Oxazole-2-carbonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.76 (1H, s), 8.67 (1H, dt, J 7.9, 1.5), 7.70 (1H, dt, J 7.8, 1.4), 7.55 (1H, t, J 7.9), 7.03 (1H, s), 5.34 (2H, br. s), 3.71–3.81 (6H, m), 2.51–2.63 (4H, m); MSm/z 352 (M + H). HRMS calcd for C18H17N5OS 351.1154, found 352.1268 (M+ + H).

Compound 78: 3-[4-amino-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,3-Dicyanobenzene
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 8.77 (1H, s), 8.68 (1H, d, J 7.9), 7.70 (1H, d, J 7.9), 7.56 (1H, t, J 7.7), 7.00 (1H, s), 5.25 (2H, br. s), 3.74 (2H, d, J 2.3), 2.80–3.00 (2H, m), 1.93–2.15 (2H, m), 1.57–1.78 (2H, m), 1.19–1.39 (2H, m), 0.82–0.97 (6H, m); MSm/z 378 (M + H).

Compound 79: 3-[4-amino-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,3-Dicyanobenzene
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.77 (1H, s), 8.68 (1H, d, J 8.1), 7.70 (1H, dt, J 7.7, 1.3), 7.56 (1H, t, J 7.8), 7.00 (1H, s), 5.26 (2H, s), 4.73 (1H, d, JHF 48.7), 3.78 (2H, s), 2.59–2.69 (2H, m), 2.48–2.58 (2H, m), 1.87–1.02 (4H, m); MSm/z 368 (M + H). HRMS calcd for C19H18FN5S 367.1267, found 368.1301 (M+ + H).

Compound 80: 3-[4-amino-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,3-Dicyanobenzene
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.77 (1H, t, J 1.5), 8.68 (1H, dt, J 7.9, 1.5), 7.70 (1H, dt, J 7.6, 1.5), 7.56 (1H, t, J 7.9), 7.04 (1H, s), 5.27 (2H, br. s), 3.89 (2H, s), 2.76 (2H, t, JHF 11.1), 2.55–2.63 (2H, m), 1.77–1.99 (4H, m); MSm/z 386 (M + H).

Compound 81: 3-(4-amino-6-thiomorpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-2-yl)-benzonitrile

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1,3-Dicyanobenzene
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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methanol-d4
) δH 8.61–8.67 (2H, m), 7.93 (1H, ddd, J 7.7, 1.3, 1.1), 7.70 (1H, t, J 7.7), 7.60 (2H, br. s), 7.45 (1H, s), 3.78 (2H, s), 2.69–2.76 (4H, m), 2.61–2.67 (4H, m); MSm/z 368 (M + H).

Compound 82: 3-[4-amino-6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,3-Dicyanobenzene
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.75 (1H, t, J 1.5), 8.66 (1H, ddd, J 8.1, 1.3, 1.1), 7.69 (1H, ddd, J 7.7, 1.3, 1.1), 7.55 (1H, t, J 7.7), 7.06 (1H, s), 5.75–5.82 (1H, m), 5.64–5.71 (1H, m), 5.39 (2H, br. s), 3.86 (2H, s), 3.06–3.15 (2H, m), 2.67 (2H, t, J 5.7), 2.17–2.24 (2H, m); MSm/z 348 (M + H).

Compound 83: 3-(4-amino-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-2-yl)-benzonitrile

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1,3-Dicyanobenzene
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.76 (1H, s), 8.67 (1H, dt, J 7.9, 1.3), 7.69 (1H, dt, J 7.6, 1.5), 7.55 (1H, t, J 7.7), 7.03 (1H, s), 5.32 (2H, br. s), 3.90 (2H, s), 2.58–2.68 (4H, m), 1.77–1.89 (4H, m); MSm/z 336 (M + H).

Compound 84: 3-[4-amino-6-(2,6-dimethyl-morpholin-4-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,3-Dicyanobenzene
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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acetone-d6
): δH 8.54–8.65 (2H, m), 7.72 (1H, d, J 7.9), 7.57 (1H, t, J 8.1), 7.30 (1H, s), 6.84 (2H, br. s), 3.64 (2H, s), 3.42–3.58 (2H, m), 2.62–2.77 (2H, m), 1.63 (2H, t, J 10.7), 0.95 (3H, s), 0.93 (3H, s); MSm/z 380 (M + H).

Compound 85: 2-[4-amino-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,2-Dicyanobenzene
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.36 (1H, d, J 8.1), 7.81 (1H, d, J 7.6), 7.67 (1H, td, J 7.8, 1.3), 7.48–7.53 (1H, m), 7.05 (1H, s), 5.36 (2H, s), 4.74 (1H, d, JHF 48.7), 3.79 (2H, s), 2.47–2.70 (4H, m), 1.83–2.02 (4H, m); MSm/z 368 (M + H).

Compound 86: 4-[4-amino-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,4-Dicyanobenzene
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.55 (2H, d, J 8.7), 7.74 (2H, d, J 8.7), 7.01 (1H, s), 5.25 (2H, s), 4.74 (1H, d, JHF 48.6), 3.78 (2H, s), 2.48–2.69 (4H, m), 1.85–1.99 (4H, m); MSm/z 368 (M + H).

Compound 87: 4-[4-amino-6-(3,6-dihydro-2H-pyridin-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,4-Dicyanobenzene
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.56 (2H, d, J 8.3), 7.74 (2H, d, J 8.3), 7.05 (1H, s), 5.76–5.84 (1H, m), 5.62–5.73 (1H, m), 5.22 (2H, br. s), 3.86 (2H, s), 3.08–3.13 (2H, m), 2.66 (2H, t, J 5.7), 2.17–2.24 (2H, m); MSm/z 348 (M + H).

Compound 88: 4-[4-amino-6-(2,5-dihydro-pyrrol-1-ylmethyl)-thieno[2,3-d]pyrimidin-2-yl]-benzonitrile

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1,4-Dicyanobenzene
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.55 (2H, d, J 8.7), 7.74 (2H, d, J 8.7), 7.04 (1H, s), 5.81 (2H, s), 5.23 (2H, br. s), 4.09 (2H, s), 3.61 (4H, s); MSm/z 334 (M + H).

Compound 89: 6-((2,5-dihydro-1H-pyrrol-1-yl)methyl)-2-(3-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine

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3-(Trifluoromethyl)benzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 8.75 (1H, s), 8.65 (1H, d, J 7.9), 7.70 (1H, d, J 7.5), 7.59 (1H, t, J 7.9), 7.07 (1H, s), 5.83 (2H, s), 5.26 (2H, br. s), 4.11 (2H, s), 3.60–3.67 (4H, m). MSm/z 377 (M + H).

Compound 90: 6-((4-fluoropiperidin-1-yl)methyl)-2-(3-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine

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3-(Trifluoromethyl)benzonitrile
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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 8.75 (1H, s), 8.65 (1H, d, J 7.9), 7.70 (1H, d, J 7.9), 7.59 (1H, t, J 7.7), 7.04 (1H, s), 5.26 (2H, br. s), 3.81 (2H, s), 2.49–2.76 (4H, m), 1.88–2.04 (4H, m); MSm/z 411 (M + H).

Compound 91: 6-((4-fluoropiperidin-1-yl)methyl)-2-(4-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine

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4-(Trifluoromethyl)benzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
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chloroform-d
): δH 8.57 (2H, d, J 8.3), 7.72 (2H, d, J 8.3), 7.05 (1H, br. s), 5.26 (2H, br. s), 4.81 (1H, td, J 5.8, 3.0), 3.82 (2H, s), 3.37–3.67 (4H, m), 2.67 (4H, m); MSm/z 411 (M + H).

Compound 92: 6-((4-fluoropiperidin-1-yl)methyl)-2-(2-(trifluoromethyl)phenyl)thieno[2,3-d]pyrimidin-4-amine

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2-(Trifluoromethyl)benzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
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chloroform-d
): v 7.79 (1H, d, J 7.9), 7.73 (1H, d, J 7.4), 7.64 (1H, t, J 7.3), 7.54 (1H, t, J 7.6), 7.06 (1H, s), 5.29 (2H, br. s), 4.74–4.90 (1H, m), 3.81 (2H, s), 3.35–3.70 (4H, m), 2.45–2.66 (4H, m); MSm/z 411 (M + H).

Compound 93: 6-((4-fluoropiperidin-1-yl)methyl)-2-(3-(methylsulfonyl)phenyl)thieno[2,3-d]pyrimidin-4-amine

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3-(Methylsulfonyl)benzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 9.04 (1H, s), 8.77 (1H, d, J 7.9), 8.03 (1H, d, J 7.5), 7.68 (1H, t, J 7.9), 7.07 (1H, br. s), 5.47 (2H, br. s), 4.76 (1H, d, JHF 48.6), 3.81 (2H, br. s), 3.15 (3H, s), 2.60 (4H, m), 1.95 (4H, m); MSm/z 421 (M + H).

Compound 94: 6-((4-fluoropiperidin-1-yl)methyl)-2-(3-nitrophenyl)thieno[2,3-d]pyrimidin-4-amine

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3-Nitrobenzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
) δH 9.31 (1H, t, J 2.0), 8.79 (1H, dt, J 7.8, 1.3), 8.28 (1H, ddd, J 8.2, 2.3, 1.2), 7.62 (1H, t, J 7.9), 7.01 (1H, s), 5.25 (2H, s), 4.74 (1H, d, JHF 48.7), 3.79 (2H, s), 2.48–2.69 (4H, m), 1.83–2.00 (4H, m); MSm/z 388 (M + H).

Compound 95: 3-(4-amino-6-((4-fluoropiperidin-1-yl)methyl)thieno[2,3-d]pyrimidin-2-yl)-N,N-dimethylbenzamide

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3-Cyano-N,N-dimethylbenzamide
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.45 (1H, m), 8.41 (1H, dt, J 7.2, 1.9), 7.43–7.53 (2H, m), 7.31 (1H, s), 6.73 (2H, br. s), 4.71 (1H, d, JHF 48.6), 3.76 (2H, s), 3.17 (3H, s), 3.08 (3H, s), 2.60–2.71 (2H, m), 2.45–2.57 (2H, m), 1.84–2.02 (4H, m). MSm/z 414 (M + H).

Compound 96: 6-(4-fluoro-piperidin-1-ylmethyl)-2-(3-methoxy-phenyl)-thieno[2,3-d]pyrimidin-4-ylamine

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3-Methoxybenzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 8.02 (1H, dt, J 7.6, 1.3), 7.99 (1H, dd, J 2.6, 1.5), 7.37 (1H, t, J 7.9), 6.96–7.02 (2H, m), 5.18 (2H, br. s), 4.72 (1H, d, JHF 49.0), 3.92 (3H, s), 3.76 (2H, s), 2.59–2.69 (2H, m), 2.47–2.57 (2H, m), 1.85–1.99 (4H, m); MSm/z 373 (M + H).

Compound 97: 2-(3-methoxy-phenyl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

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3-Methoxybenzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 7.97–8.06 (2H, m), 7.37 (1H, t, J 7.9), 7.01 (1H, dd, J 2.6, 0.8), 6.98 (1H, s), 5.27 (2H, br. s), 3.91 (3H, s), 3.71–3.77 (6H, m), 2.52–2.57 (4H, m); MSm/z 357 (M + H).

Compound 98: 6-(3,3-difluoro-piperidin-1-ylmethyl)-2-(3-methoxy-phenyl)-thieno[2,3-d]pyrimidin-4-ylamine

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3-Methoxybenzonitrile
was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
) δH 7.97–8.05 (2H, m), 7.37 (1H, t, J 8.1), 6.96–7.03 (2H, m), 5.32 (2H, s), 3.91 (3H, s), 3.85 (2H, s), 2.74 (2H, t, JHF 11.1), 2.49–2.60 (2H, m), 1.73–1.98 (4H, m); MSm/z 391 (M + H).

Compounds 38–42 were prepared according to the procedures described for compound 18 except 5-difluoro-furan-2-carbonitrile was used in place of COMPOUND LINKS

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furan-2-carbonitrile
. 5-Difluoro-furan-2-carbonitrile was prepared via the following procedure: To a solution of Et2NSF3 (2.8 mL, 21.4 mmol) and CH2Cl2 (10 mL) at 4 °C was added a solution of COMPOUND LINKS

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5-formyl-furan-2-carbonitrile
(2.44 g, 20.2 mmol; W. Hoyle and G. P. Roberts, J. Med. Chem., 1973, 16, 709) in CH2Cl2 (10 mL). After 30 min at 4 °C, saturated aqueous NaHCO3 was added, the layers were separated and the aqueous layer was extracted with CH2Cl2. The combined organics were dried (Na2SO4) and concentrated to give 2.15 g of COMPOUND LINKS

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5-difluoromethyl-furan-2-carbonitrile
that was used without further purification.

Compound 38: 2-(5-difluoromethyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (400 MHz, COMPOUND LINKS

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DMSO-d6
) δH 7.63 (2H, br. s), 7.43 (1H, s), 7.19 (1H, d, J 3.4), 7.16 (1H, t, J 53.3), 7.02 (1H, m), 3.72 (2H, s), 3.59 (4H, t, J 4.4), 2.44 (4H, m); MSm/z 367 (M + H).

Compound 39: 2-(5-difluoromethyl-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (400 MHz, COMPOUND LINKS

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acetone-d6
) δH 7.40 (1H, s), 7.19 (1H, d, J 3.4 Hz), 7.00 (1H, t, J 53.7 Hz), 6.93–6.97 (1H, m), 6.89 (1H, br. s), 4.08 (2H, s), 2.50–2.62 (2H, m), 1.53–1.67 (4H, m), 1.27–1.33 (2H, m), 1.15 (6H, d, J 6.4); MSm/z 393 (M + H).

Compound 40: 2-(5-difluoromethyl-furan-2-yl)-6-(4-fluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (400 MHz, COMPOUND LINKS

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acetone-d6
) δH 7.39 (1H, s), 7.20 (1H, d, J 3.7), 7.01 (1H, t, J 53.7), 6.94–6.98 (1H, m), 6.89 (2H, br. s), 3.78 (2H, d, J 1.2), 2.61–2.71 (2H, m), 2.43–2.52 (2H, m), 2.08–2.10 (1H, m), 1.74–1.99 (4H, m); MSm/z 383 (M + H).

Compound 41: 2-(5-difluoromethyl-furan-2-yl)-6-(4,4-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (400 MHz, COMPOUND LINKS

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acetone-d6
) δH 7.41 (1H, s), 7.21 (1H, d, J 3.4), 7.01 (1H, t, J 53.7), 6.94–6.99 (1H, m), 6.92 (2H, br. s), 3.87 (2H, d, J 1.0), 2.66 (4H, t, J 5.5), 1.95–2.04 (4H, m); MSm/z 401 (M + H).

Compound 42: 2-(5-difluoromethyl-furan-2-yl)-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (400 MHz, COMPOUND LINKS

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acetone-d6
) δH 7.41 (1H, s), 7.21 (1H, d, J 3.7), 7.01 (1H, t, J 53.7), 6.89–6.98 (3H, m), 3.90 (2H, s), 2.77 (2H, t, J 11.5), 2.58 (2H, t, J 5.0), 1.85–1.98 (2H, m), 1.71–1.81 (2H, m); MSm/z 401 (M + H).

Compound 63: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine

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potassium-tert-butoxide
(182 mg, 1.6 mmol) was added to a dioxane solution (4 mL) of COMPOUND LINKS

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2-amino-3-cyanothiophene
(1.0 g, 8.1 mmol) and COMPOUND LINKS

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4-methyl-thiazole-2-carbonitrile
(1.0 g, 8.1 mmol). The resulting mixture was heated in an oil bath at 130 °C for 10 minutes. The dark slurry was cooled to room temperature, diluted with THF, and dry packed onto COMPOUND LINKS

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silica
gel. The material was the purified viacolumn chromatography to give 1.1 g of 2-(4-methylthiazol-2-yl)thieno[2,3-d]pyrimidin-4-amine.

Solid NBS (623 mg, 3.5 mmol) was added to a THF solution (30 mL) of 2-(4-methylthiazol-2-yl)thieno[2,3-d]pyrimidin-4-amine (800 mg, 3.2 mmol). After 3 h the mixture was diluted with EtOAc and washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 825 mg of 6-bromo-2-(4-methylthiazol-2-yl)thieno[2,3-d]pyrimidin-4-amine.

Neat COMPOUND LINKS

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vinylboronic acid dibutyl ester
(1.0 mL, 4.7 mmol) was added to a dioxane (20 mL)/COMPOUND LINKS

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water
(5 mL) solution of 6-bromo-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine (775 mg, 2.4 mmol), Pd(dppf)Cl2 (196 mg, 0.2 mmol), and K2CO3 (650 mg, 4.7 mmol) and the mixture was heated to 80 °C. After 3 h the mixture was cooled and diluted with EtOAc. The organic phase was washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4) and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 460 mg of 2-(4-methyl-thiazol-2-yl)-6-vinyl-thieno[2,3-d]pyrimidin-4-ylamine.

Solid MeSO2NH2 (162 mg, 1.7 mmol) was added to a t-BuOH (8 mL)/COMPOUND LINKS

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water
(8 mL) solution of AD mix-α (2.4 g). After 15 min the resulting mixture was added to an acetone suspension (8 mL) of 2-(4-methyl-thiazol-2-yl)-6-vinyl-thieno[2,3-d]pyrimidin-4-ylamine (460 mg, 1.7 mmol) and the mixture was stirred vigorously. After 18 h COMPOUND LINKS

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sodium sulfite
(2.5 g) was added and the mixture was stirred for an additional 30 minutes. The mixture was extracted with EtOAc and the combined extracts were washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), and concentrated to give 350 mg of 1-[4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-6-yl]-ethane-1,2-diol that was used without further purification.

Solid HIO4 (775 mg, 3.4 mmol) was added to a THF solution (20 mL) of 1-[4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-6-yl]-ethane-1,2-diol (350 mg, 1.1 mmol). After 2 h saturated aqueous NaHCO3 was added and the aqueous phase was extracted with EtOAc. The combined extracts were washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 113 mg of 4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidine-6-carbaldehyde.

Solid NaBH(OAc)3 (45 mg, 0.21 mmol) was added to a THF solution (2 mL) of 4-amino-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidine-6-carbaldehyde (40 mg, 0.14 mmol) and COMPOUND LINKS

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cis-2,6-dimethyl-piperidine
(58 μL, 0.43 mmol) and the mixture was heated to 45 °C. After 16 h the mixture was cooled, diluted with EtOAc, washed with saturated aqueous NaHCO3, COMPOUND LINKS

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water
and brine, dried (Na2SO4), and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 15 mg of 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(4-methyl-thiazol-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine 63. 1H NMR (COMPOUND LINKS

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Acetone
, 300 MHz): δ = 7.29 (1H, s), 7.13 (1H, s), 6.87 (2H, br. s), 3.96 (2H, s), 2.43 (2H, br. s), 2.34 (3H, s), 1.38–1.58 (2H, m), 1.10–1.23 (4H, m), 1.02 (6H, d, J 6.4); MSm/z 374 (M + H).

The procedure used to prepare compound 63 was also used to prepare the following compounds with the appropriate amine substituent. Also, the corresponding nitrile replacement for the 4-methyl-thiazole-2-carbonitrile is specified where appropriate.

Compound 15: 2-(5-methyl-furan-2-yl)-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Methylfuran-2-carbonitrile
was used in place of COMPOUND LINKS

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4-methyl-thiazole-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.17 (1H, d, J 3.4), 7.11 (1H, s), 6.15 (1H, d, J 3.4), 5.50 (2H, br. s), 3.94 (2H, s), 2.66–2.80 (4H, m), 2.44 (3H, s), 1.86 (4H, dt, J 6.4, 3.3); MSm/z 315 (M + H).

Compound 16: 2-(5-methyl-furan-2-yl)-6-piperidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Methylfuran-2-carbonitrile
was used in place of COMPOUND LINKS

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4-methyl-thiazole-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.09 (1H, d, J 3.0), 6.90 (1H, s), 6.08 (1H, d, J 2.3), 5.21 (2H, br. s), 3.65 (2H, s), 2.42 (4H, br. s), 2.38 (3H, s), 1.55 (4H, quin, J 5.6), 1.39 (2H, d, J 5.1); MSm/z 329 (M + H).

Compound 19: 2-(5-methyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Methylfuran-2-carbonitrile
was used in place of COMPOUND LINKS

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4-methyl-thiazole-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.17 (1H, d, J 3.3), 6.95 (1H, s), 6.15 (1H, d, J 2.5), 5.27 (2H, br. s), 3.61–3.80 (6H, m), 2.49–2.58 (4H, m), 2.45 (3H, s); MSm/z 331 (M + H).

Compound 20: 6-(3,4-dihydro-1H-isoquinolin-2-ylmethyl)-2-(5-methyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Methylfuran-2-carbonitrile
was used in place of COMPOUND LINKS

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4-methyl-thiazole-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.06–7.23 (4H, m), 6.95–7.04 (2H, m), 6.14 (1H, dd, J 3.3, 0.8), 5.35 (2H, br. s), 3.91 (2H, s), 3.74 (2H, s), 2.91 (3H, t, J 5.3), 2.82 (2H, t, J 5.5); MSm/z 377 (M + H).

Compound 62: 2-(4-methyl-thiazol-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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acetone-d6
): δH 7.31 (1H, s), 7.13 (1H, s), 6.88 (2H, br. s), 3.65 (2H, s), 3.47–3.56 (4H, m), 2.35–2.40 (4H, m), 2.34 (3H, s); MSm/z 348 (M + H).

Compound 47: 2-(5-chloro-furan-2-yl)-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

Solid COMPOUND LINKS

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potassium-tert-butoxide
(162 mg, 1.4 mmol) was added to a dioxane solution (4 mL) of COMPOUND LINKS

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2-amino-5-methyl-thiophene-3-carbonitrile
(1.0 g, 7.2 mmol) and COMPOUND LINKS

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5-chlorofuran-2-carbonitrile
(920 mg, 7.2 mmol). The resulting mixture was heated in an oil bath at 130 °C for 10 minutes. The dark slurry was cooled to room temperature, diluted with THF, and dry packed onto COMPOUND LINKS

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silica
gel. The material was the purified viacolumn chromatography to give 950 mg of 2-(5-chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine.

Solid COMPOUND LINKS

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DMAP
(29 mg, 0.2 mmol) was added to a THF solution (12 mL) of (Boc)2O (1.3 g, 5.9 mmol) and 2-(5-Chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-ylamine (630 mg, 2.4 mmol). After 6 h the mixture was diluted with EtOAc and the organic layer was washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), concentrated and purified viacolumn chromatography to give 928 mg of [2-(5-Chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester.

Solid COMPOUND LINKS

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benzoyl peroxide
(34 mg, 0.1 mmol) was added to a benzene solution (10 mL) of DBDMH (314 mg, 1.1 mmol) and [2-(5-chloro-furan-2-yl)-6-methyl-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester (928 mg, 2.0 mmol) and the resulting mixture was heated to reflux. After 14 h the mixture was cooled to rt, diluted with EtOAc and the organic layer was washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), concentrated and purified viacolumn chromatography to give 651 mg of [6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester.

Neat TFA (2 mL) was added to a CH2Cl2 solution (8 mL) of [6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-yl]-bis-carbamic acid tert-butyl ester (651 mg). After 4 h saturated aqueous NaHCO3 was added and the aqueous phase was extracted with EtOAc. The combined organics were washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), and concentrated to give 369 mg of 6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine that was used without further purification.

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3,3-difluoro-piperidine hydrochloride
(34 mg, 0.22 mmol) was added to a THF solution (1 mL) of COMPOUND LINKS

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diisopropylethyl amine
(0.10 mL, 0.56 mmol) and 6-bromomethyl-2-(5-chloro-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine (50 mg, 0.14 mmol) and the mixture was heated to 40 °C. After 2 h the mixture was diluted with EtOAc then washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), concentrated and purified viacolumn chromatography to give 31 mg of 2-(5-chloro-furan-2-yl)-6-(3,3-difluoro-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine 47. 1H NMR (COMPOUND LINKS

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chloroform-d
, 300 MHz): δ = 7.23 (1H, d, J 3.4), 6.99 (1H, s), 6.34 (1H, d, J 3.4), 5.31 (2H, br. s), 3.86 (2H, s), 2.75 (2H, t, J 11.1), 2.57 (2H, t, J 5.1), 1.73–1.99 (4H, m); MSm/z 385 (M + H). HRMS calcd for C18H12ClF2N4OS 384.0623, found 385.0649 (M+ + H)

The procedure used to prepare compound 47 was also used to prepare the following compounds with the appropriate amine substituent:

Compound 45: 2-(5-chloro-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.23 (1H, d, J 3.8), 6.97 (1H, s), 6.34 (1H, d, J 3.8), 5.39 (2H, br. s), 3.68–3.80 (6H, m), 2.46–2.61 (4H, m); MSm/z 351 (M + H).

Compound 50: 2-(5-chloro-furan-2-yl)-6-(3,3-difluoro-pyrrolidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.22–7.26 (1H, m), 7.00 (1H, s), 6.34 (1H, d, J 3.4 Hz), 5.41 (2H, br. s), 3.90 (2H, s), 3.01 (2H, t, J 13.2), 2.86 (1H, t, J 7.0), 2.33 (2H, tt, J 14.4, 7.1); MSm/z 371 (M + H).

Compound 51: 2-(5-bromo-furan-2-yl)-6-pyrrolidin-1-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Bromofuran-2-carbonitrile
was used in place of COMPOUND LINKS

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5-chlorofuran-2-carbonitrile
. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.20 (1H, d, J 3.4), 7.07 (1H, s), 6.47 (1H, d, J 3.6), 5.47 (2H, br. s), 3.91 (2H, s), 2.61–2.74 (4H, m), 1.85 (4H, dt, J 6.7, 3.2); MSm/z 380 (M + H).

Compound 52: 2-(5-bromo-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Bromofuran-2-carbonitrile
was used in place of COMPOUND LINKS

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5-chlorofuran-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.20 (1H, d, J 3.4), 6.97 (1H, s), 6.48 (1H, d, J 3.4), 5.40 (2H, br. s), 3.61–3.86 (6H, m), 2.40–2.65 (4H, m); MSm/z 396 (M + H). HRMS calcd for C15H15BrN4O2S 394.0099, found 395.0147 (M+ + H).

Compound 53: 2-(5-bromo-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

COMPOUND LINKS

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5-Bromofuran-2-carbonitrile
was used in place of COMPOUND LINKS

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5-chlorofuran-2-carbonitrile
. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.19 (1H, d, J 3.4), 6.95 (1H, s), 6.48 (1H, d, J 3.7), 5.44 (2H, br. s), 4.11 (2H, s), 2.45–2.66 (2H, m), 1.55–1.70 (2H, m), 1.26–1.39 (4H, m), 1.19 (6H, d, J 6.1); MSm/z 422 (M + H).

Compound 32: 2-(5-ethyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

A 1 M THF solution of Et2Zn (0.6 mL, 0.60 mmol) was added to a THF solution (1.5 mL) of Pd(dppf)Cl2 (10 mg, 0.01 mmol) and 2-(5-bromo-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine 52 (60 mg, 0.15 mmol) and the mixture was refluxed. After 4 h the mixture was cooled and carefully diluted with EtOAc and COMPOUND LINKS

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water
. The aqueous phase was extracted with EtOAc and the combined organics were washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4), and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 33 mg of the title compound. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.19 (1H, d, J 3.4), 6.95 (1H, s), 6.17 (1H, d, J 3.4), 5.32 (2H, s), 3.68–3.77 (6H, m), 2.81 (2H, q, J 7.5), 2.44–2.58 (4H, m), 1.25–1.34 (3H, m); MSm/z 345 (M + H).

The procedure to prepare compound 32 was also used to prepare the following compounds:

Compound 33: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(5-ethyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine

Compound 53 was used in place of compound 52. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.18 (1H, d, J 3.4), 6.95 (1H, s), 6.16 (1H, d, J 3.4), 5.34 (2H, br. s), 4.13 (2H, s), 2.81 (2H, q, J 7.4), 2.57 (2H, br. s), 1.78 (4H, br. s), 1.51–1.70 (2H, m), 1.23–1.35 (3H, m), 1.21 (6H, d, J 6.0); MSm/z 371 (M + H).

Compound 34: 2-(5-isopropyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

i-PrZnBr was used in place of Et2Zn. 1H NMR (400 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.18 (1H, d, J 3.4), 6.95 (1H, s), 6.15 (1H, d, J 3.4), 5.26 (2H, br. s), 3.68–3.79 (6H, m), 3.07–3.19 (1H, m), 2.45–2.59 (4H, m), 1.32 (6H, d, J 7.1); MSm/z 359 (M + H).

Compound 35: 6-(2,6-dimethyl-piperidin-1-ylmethyl)-2-(5-isopropyl-furan-2-yl)-thieno[2,3-d]pyrimidin-4-ylamine

i-PrZnBr and compound 53 were used in place of Et2Zn and compound 52, respectively. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.17 (1H, d, J 3.4), 6.95 (1H, s), 6.14 (1H, d, J 3.0), 5.34 (2H, br. s), 4.13 (2H, s), 3.12 (1H, quin, J 6.9), 2.57 (2H, br. s), 1.51–1.80 (6H, m), 1.32 (6H, d, J 6.8), 1.2 (6H, d, J 6.0); MSm/z 385 (M + H).

Compound 37: 2-(5-cyclopropyl-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine

Solid COMPOUND LINKS

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cyclopropylboronic acid
(31 mg, 0.36 mmol) was added to a toluene (1 mL)/COMPOUND LINKS

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water
(0.05 mL) suspension of 2-(5-bromo-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine 53 (60 mg, 0.14 mmol), Pd(OAc)2 (2 mg, 0.01 mmol), P(Cy)3 (5 mg, 0.02 mmol) and K3PO4 (104 mg, 0.49 mmol) and the mixture was heated to 100 °C. After 4 h the mixture was cooled, diluted with EtOAc, washed with COMPOUND LINKS

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water
and brine, dried (Na2SO4) and dry packed onto COMPOUND LINKS

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silica
gel. Column chromatography gave 30 mg of 2-(5-cyclopropyl-furan-2-yl)-6-(2,6-dimethyl-piperidin-1-ylmethyl)-thieno[2,3-d]pyrimidin-4-ylamine 37. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.15 (1H, d, J 3.4), 6.87–6.99 (1H, m), 6.03 (1H, d, J 3.0), 5.27 (2H, s), 4.12 (2H, s), 2.56 (2H, br. s), 2.00–2.11 (1H, m), 1.58–1.71 (2H, m), 1.23–1.41 (4H, m), 1.21 (3H, s), 1.19 (3H, s), 0.89–0.99 (2H, m), 0.79–0.88 (2H, m); MSm/z 383 (M + H).

Compound 36: 2-(5-cyclopropyl-furan-2-yl)-6-morpholin-4-ylmethyl-thieno[2,3-d]pyrimidin-4-ylamine

Compound 36 was prepared according to the procedure described in compound 37 except compound 52 was used in place of compound 53. 1H NMR (300 MHz, COMPOUND LINKS

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chloroform-d
): δH 7.16 (1H, d, J 3.4), 6.95 (1H, s), 6.03 (1H, d, J 3.4), 5.29 (2H, s), 3.62–3.83 (6H, m), 2.47–2.56 (4H, m), 1.99–2.12 (1H, m), 0.90–1.00 (2H, m), 0.79–0.89 (2H, m); MSm/z 357 (M + H).
COMPOUND LINKS

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Adenosine
A2Areceptor functional assay.
To initiate the functional assay, cryopreserved CHO-K1 cells overexpressing the human adenosine A2Areceptor and containing a cAMP inducible β-galactosidase reporter gene were thawed, centrifuged, COMPOUND LINKS

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DMSO
containing media removed, and then seeded with fresh culture media into clear 384-well tissue culture treated plates (BD #353961) at a concentration of 10 K cells per well. Prior to assay, these plates were cultured for two days at 37 °C, 5% CO2 and 90% Rh. On the day of the functional assay, culture media was removed and replaced with 45 μL assay medium (Hams/F-12 Modified (Mediatech # 10-080CV) supplemented w/0.1% BSA). Test compounds were diluted and 11 point curves created at a 1000× concentration in 100% COMPOUND LINKS

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DMSO
. Immediately after addition of assay media to the cell plates, 50 nL of the appropriate test compound antagonist or agonist control curves were added to cell plates using a Cartesian Hummingbird. Compound curves were allowed to incubate at room temperature on cell plates for approximately 15 minutes before addition of a 15 nM NECA (Sigma E2387) agonist challenge (5 μL volume). A control curve of NECA, a DMSO/media control, and a single dose of COMPOUND LINKS

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Forskolin
(Sigma F3917) were also included on each plate. After additions, cell plates were allowed to incubate at 37 °C, 5% CO2, 90% Rh for 5.5–6 hours. After incubation, media was removed, and cell plates were washed 1 × 50 μL with DPBS w/o Ca and Mg (Mediatech 21-031-CV). Into dry wells, 20 μL of 1× Reporter Lysis Buffer (Promega E3971 (diluted in dH2O from 5× stock)) was added to each well and plates frozen at −20 °C overnight. For β-galactosidase enzyme colorimetric assay, plates were thawed out at room temperature and 20 μL 2× assay buffer (Promega) was added to each well. Color was allowed to develop at 37 °C, 5% CO2, 90% Rh for 1–1.5 h or until reasonable signal appeared. The colorimetric reaction was stopped with the addition of 60 μL per well 1 M sodium carbonate. Plates were counted at 405 nm on a SpectraMax Microplate Reader (Molecular Devices). Data were analyzed in Microsoft Excel and IC/EC50 curves were fit using a standardized macro.
COMPOUND LINKS

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Adenosine
A1receptor functional assay.
To initiate the functional assay, cryopreserved CHO-K1 cells overexpressing the human adenosine A1receptor and containing a cAMP inducible β-galactosidase reporter gene were thawed, centrifuged, COMPOUND LINKS

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DMSO
containing media removed, and then seeded with fresh culture media into clear 384-well tissue culture treated plates (BD #353961) at a concentration of 10 K cells per well. Prior to assay, these plates were cultured for two days at 37 °C, 5% CO2 and 90% Rh. On the day of the functional assay, culture media was removed and replaced with 45 μL assay medium (Hams/F-12 Modified (Mediatech # 10-080CV) supplemented w/0.1% BSA). Test compounds were diluted and 11 point curves created at a 1000× concentration in 100% COMPOUND LINKS

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DMSO
. Immediately after addition of assay media to the cell plates, 50 nL of the appropriate test compound antagonist or agonist control curves were added to cell plates using a Cartesian Hummingbird. Compound curves were allowed to incubate at room temperature on cell plates for approximately 15 minutes before addition of a 4 nM r-PIA (Sigma P4532)/1 μM COMPOUND LINKS

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Forskolin
(Sigma F3917) agonist challenge (5 μL volume). A control curve of r-PIA in1 μM COMPOUND LINKS

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Forskolin
, a DMSO/Media control, and a single dose of COMPOUND LINKS

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Forskolin
were also included on each plate. After additions, cell plates were allowed to incubate at 37 °C, 5% CO2, 90% Rh for 5.5–6 hours. After incubation, media was removed, and cell plates were washed 1 × 50 μL with DPBS w/o Ca and Mg (Mediatech 21-031-CV). Into dry wells, 20 μL of 1× Reporter Lysis Buffer (Promega E3971 (diluted in dH2O from 5× stock)) was added to each well and plates frozen at −20 °C overnight. For β-galactosidase enzyme colorimetric assay, plates were thawed out at room temperature and 20 μL 2× assay buffer (Promega) was added to each well. Color was allowed to develop at 37 °C, 5% CO2, 90% Rh for 1–1.5 h or until reasonable signal appeared. The colorimetric reaction was stopped with the addition of 60 μL per well 1 M sodium carbonate. Plates were counted at 405 nm on a SpectraMax Microplate Reader (Molecular Devices). Data were analyzed in Microsoft Excel and IC/EC50 curves were fit using a standardized macro.
Mouse catalepsy study. COMPOUND LINKS

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Haloperidol
, a neuroleptic medication that inhibits COMPOUND LINKS

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dopamine
D2 receptors, was used to induce catalepsy. In the rodent, catalepsy is characterized by a loss of voluntary motion where limbs uncharacteristically remain in placed positions. Catalepsy was measured in COMPOUND LINKS

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haloperidol
(1 mg kg−1, s.c.) treated mice (fasted, male balb/c mice) after oral administration of compound (0.01, 0.10, 1.0, 3.0 or 10.0 mg kg−1, p.o.), L-DOPA (300 mg kg−1; co-administered with COMPOUND LINKS

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carbidopa
(75 mg kg−1)), or vehicle. Animals were randomly assigned to treatment groups and behavioral testing was performed blind to treatment. Control mice received the respective s.c. and p.o. vehicles. COMPOUND LINKS

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Haloperidol
was dissolved in 0.3% COMPOUND LINKS

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tartaric acid
in 0.9% saline. L-DOPA was diluted in 0.5% methylcellulose and dosed as a suspension. Compounds were diluted in 0.5% methylcellulose and dosed as a solution. Compounds were administered orally 30 min after COMPOUND LINKS

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haloperidol
. Behavioral testing was conducted one hour after dosing of compounds. The behavioral test trial (maximum duration of 60 s) began by placing the forepaws of fasted, male balb/c mice (18–23 g) on a horizontal bar elevated 3.5 cm above the bench. The cataleptic state was regarded as over and the trial ended when the animal came off the bar by either placing its forepaws on the bench or climbing onto the bar with all of its limbs. Each value represents average (±SEM) time in cataleptic position of n = 9–11 mice per treatment group during a sixty s test session. Results are reported as an ED50 or as active/not active at a single dose.

Notes and references

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  14. The pKa values were calculated using Third Dimensional Explorer software.
  15. Third Dimensional Explorer software does not take into account the steric effects surrounding the basic atoms and may therefore not give an accurate adjustment for the pKa value. The known pKa of COMPOUND LINKS

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    piperidine
    is 11.2 (H. K. Hall Jr, J. Am. Chem. Soc., 1957, 79, 5441) and the known pKa of COMPOUND LINKS

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    cis-2,6-dimethyl-piperidine
    is 10.9 (H. K. Hall Jr, J. Am. Chem. Soc., 1957, 79, 5439). Also, the polarity of 25 is significantly less than the corresponding piperidine 16 based on TLC analysis.
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