Anil
Argade
ab,
Rajesh
Bahekar
*a,
Jigar
Desai
a,
Pravin
Thombare
a,
Kiran
Shah
a,
Sanjay
Gite
a,
Rajesh
Sunder
a,
Ramchandra
Ranvir
a,
Debdutta
Bandyopadhyay
a,
Ganes
Chakrabarti
a,
Amit
Joharapurkar
a,
Jogeswar
Mahapatra
a,
Abhijit
Chatterjee
a,
Harilal
Patel
a,
Mubeen
Shaikh
a,
Kalapatapu V. V. M.
Sairam
a,
Mukul
Jain
a and
Pankaj
Patel
a
aZydus Research Centre, Sarkhej-Bavla N.H 8A Moraiya, Ahmedabad, 382210, India. E-mail: rajeshbahekar@zyduscadila.com; Fax: +91-2717-665355; Tel: +91-2717-665555
bDepartment of Chemistry, Faculty of Science, M. S. University of Baroda, Vadodara, 390002, India
First published on 13th June 2011
A new series of γ-lactam hydroxamate based TACE inhibitors was designed mainly by introducing various substitutions at the 2nd position of the quinoline nucleus to achieve high potency and good selectivity towards TACE over COMPOUND LINKS
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Download mol file of compoundmatrix metalloproteases (MMPs) and ADAM-10. In ex vivo TNF-α inhibitory activity assays, compounds 11o and 11p were identified as the most potent compounds. The in vitro TACE inhibitory activity, selectivity over MMPs and ADAM-10 and the in vivo TNF-α inhibitory activities of compounds 11o and 11p were assessed and lead compound 11p was identified. Preliminary toxicity and pharmacokinetic (PK) studies were conducted for compound 11p and it showed an improved PK and clean toxicological profile compared to standard compound 1. Altogether, these results demonstrated the discovery of highly potent and selective γ-lactam hydroxamate based TACE inhibitors which show potential for the safe and effective treatment of inflammatory diseases.
Inhibition of TACE activity to control the level of sTNF-α offers a promising therapeutic approach for the treatment of inflammatory diseases and several orally active small molecule based TACE inhibitors are reported in the literature.7–10 While designing these TACE inhibitors, attempts were made to achieve good selectivity against closely associated matrix metalloproteases (MMPs).11,12 Despite the fact that two TACE inhibitors (BMS-561392 (1) and TMI-005 (2); Fig. 1) were advanced to Phase II clinical trial stages, so far no TACE inhibitor reached the market, mainly because of hepatotoxicity and/or lack of efficacy.13,14 The exact reasons for the development of hepatotoxicity and lack of efficacy in humans are still not clear, but it must be emphasized that the earlier TACE inhibitors discovery efforts were mainly directed to achieve selectivity over MMPs and limited attention has been paid to discriminate between TACE and other ADAM proteases.13–15 Among various ADAM family members, ADAM-10 has the highest amino acid sequence homology with TACE (especially in catalytic domain) and it also triggers catalytic conversion of tmTNF to sTNF-α.16–19
Fig. 1 Structures of TACE inhibitors under clinical developments (BMS-561392 and TMI-005). |
The docking studies and X-ray crystal structure of TACE co-crystallized with γ-lactam hydroxamate based TACE inhibitors revealed that the aromatic moiety (COMPOUND LINKS
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Download mol file of compoundquinoline nucleus at P1 region) occupies the S1 site of the enzyme, the oxygen atom of the pyrrolidinone ring forms hydrogen bonds with L348 and G349 and the isobutyl group occupies the small hydrophobic pocket (S2). The hydroxamic acid interacts with the zinc atom present in the active site of TACE and coordinates with the side-chain carboxylate of E406, while the phenyl ring exhibits aromatic stacking with the imidazole side chain of H405 (Fig. 2).20,21
Fig. 2 Pictorial representation of key interactions of BMS-561392 (1) with corresponding binding sites of TACE. |
As the S1 site of TACE is larger and bend-shaped, with respect to most of the MMPs and ADAM-10, substitution with bulky groups at P1 region of TACE inhibitors (such as 2-methylquinolin-4-yl-methoxy group, in BMS-561392) is known to result in higher potency as well as good selectivity towards TACE over MMPs.21–23 The SAR studies of sulfonamide based TACE inhibitor scaffolds demonstrated that selectivity for TACE over MMPs and ADAM-10 were greatly enhanced due to an alkynyl group at P1 position (such as 4-hydroxybutynyl group in TMI-005), which specifically was accommodated into the S1 site of TACE, mainly due to the acquisition of its favorable bent confirmation.19,24–26 Thus, the difference in the shape and size of the S1 pocket of TACE over MMPs and ADAM-10 could be exploited to design potent and selective TACE inhibitors devoid of any MMPs and ADAM-10 activity.27 As a part of our ongoing research on TACE inhibitors28 and taking above structural features into consideration, in the present communication a new series of γ-lactam hydroxamate based TACE inhibitors were designed mainly by introducing various substituents at the 2nd position of the quinoline nucleus to achieve high potency and good selectivity towards TACE over MMPs and ADAM-10.
Scheme 1 Reagents and conditions: a) SOCl2, CHCl2, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundMeOH; b) NaBH4, CH2Cl2. Wherein, 3, 4 & 5a–r: R1 = Ph–; 3Me–Ph–; 4Me–Ph–; 4Cl–Ph–; 4F–Ph–; 4MeO–Ph–; OBzl–; Cl–; CF3–; Et–; iPr–; Cpr–; Chex–; MeO–; MeO–Me–; MeO–Et–; iPrO–Me– and iPrO–Et– |
Scheme 2 Reagents and conditions: a) DEAD, TPP, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundToluene; b) TFA, CH2Cl2; c) NH2OH·HCl; d) COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundNaOH, COMPOUND LINKS Read more about this on ChemSpider Download mol file of compoundMeOH. Wherein, 6a–b: R3 = iBu– and Me–; 7, 9 & 11a–r: R1 = Ph–; 3Me–Ph–; 4Me–Ph–; 4Cl–Ph–; 4F–Ph–; 4MeO–Ph–; OBzl–; Cl–; CF3–; Et–; iPr–; Cpr–; Chex–; MeO–; MeO–Me–; MeO–Et–; iPrO–Me–; iPrO–Et– and R3 = iBu–; 7, 9, & 11s: R1 = MeO–Me– and R3 = Me–; 8 & 10: R1 = MeO–Me– and R3 = iBu– |
Following Scheme 1 and 2, a total of 22 compounds (8–10 and 11a–s) were prepared in good yield, under the mild reaction conditions and the overall percentage yield were found to be in the range of 60–70%. The ESI MS showed molecular ion peaks [M+], at different intensities, corresponding with the molecular weights of titled compounds. The elemental analyses of all the titled compounds were found within the limit of ±0.04% of theoretical values. The spectral data of all the synthesized compounds were found to be in conformity with the structure assigned and the corresponding IR, 1H NMR and ESI-MS data are presented in experimental section (see ESI§).
Comp. No | R1 | R2 | R3 | R4 | IC50 (nM)b |
---|---|---|---|---|---|
a Ex vivo TNF-α inhibition was carried out in human whole blood and plasma TNF-α concentration was determined using an ELISA kit. b IC50 values (nM) are from single determination and compound 1 (BMS-561392) was used as positive std. control. | |||||
8 | MeO–Me– | –NHBoc | iBu– | –NHOH | 3050 |
9o | MeO–Me– | –NH2 | iBu– | –COOMe | 3000 |
10 | MeO–Me– | –NH2 | iBu– | –COOH | 3230 |
11a | Ph– | –NH2 | iBu– | –NHOH | 3057 |
11b | 3Me–Ph– | –NH2 | iBu– | –NHOH | 3876 |
11c | 4Me–Ph– | –NH2 | iBu– | –NHOH | 2899 |
11d | 4Cl–Ph– | –NH2 | iBu– | –NHOH | 286 |
11e | 4F–Ph– | –NH2 | iBu– | –NHOH | 290 |
11f | 4MeO–Ph– | –NH2 | iBu– | –NHOH | 250 |
11g | OBzl– | –NH2 | iBu– | –NHOH | 4000 |
11h | Cl– | –NH2 | iBu– | –NHOH | 450 |
11i | CF3– | –NH2 | iBu– | –NHOH | 470 |
11j | Et– | –NH2 | iBu– | –NHOH | 111 |
11k | iPr– | –NH2 | iBu– | –NHOH | 140 |
11l | Cpr– | –NH2 | iBu– | –NHOH | 170 |
11m | Chex– | –NH2 | iBu– | –NHOH | 177 |
11n | MeO– | –NH2 | iBu– | –NHOH | 401 |
11o | MeO–Me– | –NH2 | iBu– | –NHOH | 11 |
11p | MeO–Et– | –NH2 | iBu– | –NHOH | 13 |
11q | iPrO–Me– | –NH2 | iBu– | –NHOH | 123 |
11r | iPrO–Et– | –NH2 | iBu– | –NHOH | 130 |
11s | MeO–Me– | –NH2 | Me– | –NHOH | 98 |
1 | 60 |
Introduction of methoxy-methyl (11o) and methoxy-ethyl (11p) groups at the 2nd position of the quinoline ring resulted in extremely potent TNF-α inhibition compared to the standard compound 1 (IC50: 60 nM), with IC50 values of 11 and 23 nM respectively, while isopropoxy-methyl (11q) and isopropoxy-ethyl (11r) showed relatively less potency than methyl analogs (1). Interestingly, substitution of R3- (isobutyl group) with methyl group (11s) showed less potency than 11o, while replacement of R2- (amino group) with NHBoc and substitution of R4 (hydroxamic acid group) with either methyl-ester (9o) or carboxylic acid (10) resulted in complete loss of TNF-α inhibition activity, indicating that a free amino group at R2 position and hydroxamic acid at R4 position is mandatory for TNF-α inhibition.
In general, compounds with electron donating groups showed good TNF-α inhibition, electron withdrawing substitutions showed moderate TNF-α inhibition, while bulky and aromatic substitutions showed weak TNF-α inhibition. Although the S1 binding pocket of TACE is large, the substitution with aromatic and bulky groups was found to be unfavorable. On the contrary, substitution with methoxy-methyl (11o) and methoxy-ethyl (11p) groups at the 2nd position showed excellent TNF-α inhibition while isopropoxy-methyl (11q) and isopropoxy-ethyl (11r) showed relatively less potency than methyl analogs (1), which could be due to the favorable bent confirmation acquisition at S1 binding pocket.23 Overall, ex vivo TNF-α inhibition results reveal that the potency of γ-lactam hydroxamate based TACE inhibitors can be modulated using suitable substituents at the 2nd position of the quinoline ring system.
Enzyme# | Compounds | ||
---|---|---|---|
Compd 1 (std) | 11o | 11p | |
a In vitro TACE inhibitory activity and selectivity over MMPs (MMP-1, -2, -3, -7, -8, -9, -13 and 14) and ADAM-10 were evaluated for selected test compounds—11o, 11p and compound 1 (BMS-561392)—using fluorescence-based FRET assay and IC50 values (nM) were determined (n = 3). | |||
TACE | 12 | 2.1 | 2.3 |
ADAM-10 | 480 | 1211 | 1199 |
MMP-1 | 429 | 1132 | 1059 |
MMP-2 | 482 | 1167 | 1088 |
MMP-3 | 285 | 1082 | 1020 |
MMP-7 | 466 | 1242 | 1008 |
MMP-8 | 299 | 1010 | 1002 |
MMP-9 | 389 | 1156 | 1210 |
MMP-13 | 461 | 1230 | 1114 |
MMP-14 | 499 | 1067 | 1085 |
Fig. 3 H-bond interactions of compound 11p (elemental colour) and BMS-561392 (1) (turquoise colour). |
As described earlier, the S1 site of TACE is larger and bend-shaped, with respect to most of the MMPs and ADAM-10, thus suitable substituents on the aromatic moiety are known to exhibit higher potency as well as good selectivity towards TACE over MMPs.21–23 As shown in Fig. 4, the methoxy-ethyl group on the 2nd position of the quinoline ring (11p) protrudes from a groove (termed the alkoxyalkyl pocket), which was not observed with 1. Together, the molecular docking study results indicate that the alkoxyalkyl substituents (compounds 11o and 11p) at the 2nd position of the quinoline ring system are essential for potent and selective TACE inhibitory activity profile.
Fig. 4 Compound 11p docked pose in the active site of TACE with the alkoxyalkyl group at the 2nd position of the quinoline protruding from the alkoxyalkyl pocket. |
PK parametersa | Compd 11p | Compd 1 | |
---|---|---|---|
a Single dose (5 mg kg−1; iv/po) PK study for compound 11p and 1 was carried out in fasting male Wistar rats (n = 9) and plasma concentration of compounds were determined by LC–MS/MS, data represented as mean ± SD. | |||
iv | t 1/2 (h) | 1.09 ± 0.1 | 2.69 ± 0.1 |
k el (h−1) | 1.02 ± 0.1 | 0.30 ± 0.1 | |
AUC (h ng ml−1) | 19726 ± 188 | 32356 ± 899 | |
po | t max (h) | 0.33 ± 0.2 | 1.21 ± 0.01 |
t 1/2 (h) | 3.81 ± 0.2 | 8.67 ± 0.26 | |
k el (h−1) | 0.44 ± 0.01 | 0.08 ± 0.05 | |
AUC (h ng ml−1) | 11776 ± 103 | 5970 ± 99 | |
F (%) | 59.69% | 18.45% |
Some of the key parameters, such as comparative hematological changes (Table 4), and relative organ weights (Table 5), which are relevant to hepatotoxicity assessment are described in detailed. Acute hepatocellular injury markers such as, ALT (COMPOUND LINKS
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Download mol file of compoundalanine aminotransferase) and AST (aspartate aminotransferase) alone or in combination with hepatobiliary markers such as ALP (alkaline phosphatase) and total COMPOUND LINKS
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Download mol file of compoundbilirubin (TBILI) are primarily considered for the assessment of hepatotoxicity in non-clinical studies.34 As shown in Table 4, the hematological parameters (WBC and RBC) of compounds 1 and 11p were found to be comparable to that of control animals. Similarly, compound 11p showed no significant changes in serum ALP, AST, ALT and TBILI as compared to the control group. However, compound 1 treated group showed significantly elevated levels of all the serum liver enzymes (ALP, AST, ALT and TBILI), which infer its hepatotoxic effects in animal model. Also, compound 1 treated group elicit hepatocellular hypertrophy, marked by significant increased in liver weight as compared to control and compound 11p treated groups (Table 5), while other key organs (heart, kidney, spleen and brain) remained un-changed.
Parameters | Compounds | ||
---|---|---|---|
Control | 11p | 1 | |
a Values expressed as mean ± SD; n = 9, Male WR, dose 100 mg kg−1, po (bid), 28 days repeated dose toxicity study. b Represent significant elevation of serum liver enzymes at P < 0.01, compared to control. | |||
WBC (103 μl−1) | 8.20 ± 0.33 | 8.41 ± 0.21 | 8.99 ± 0.41 |
RBC (106 μl−1) | 7.38 ± 0.11 | 8.01 ± 0.23 | 7.69 ± 0.99 |
ALP (U L−1) | 134.66 ± 5.3 | 121.2 ± 12.1 | 523.43 ± 7.1b |
AST (U L−1) | 147.16 ± 11.75 | 140.2 ± 9.32 | 457.21 ± 8.3b |
ALT (U L−1) | 20.78 ± 1.31 | 21.04 ± 8.36 | 39.22 ± 1.99b |
TBILI (mg dL−1) | 0.14 ± 0.01 | 0.17 ± 0.08 | 0.79 ± 0.02b |
Organs | compounds | ||
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Control (Vehicle) | 11p (100 mg kg−1, po, bid) | 1 (100 mg kg−1, po, bid) | |
a Values expressed as mean ± SD; n = 9, Male WR, dose 100 mg kg−1, po, 28 days repeated dose toxicity study. b Significant difference from control at 5% level (p < 0.05). | |||
Heart | 0.345 ± 0.007 | 0.358 ± 0.008 | 0.351 ± 0.021 |
Liver | 3.659 ± 0.1 | 3.801 ± 0.069 | 4.993 ± 0.127b |
Kidney | 0.821 ± 0.03 | 0.878 ± 0.024 | 0.831 ± 0.04 |
Spleen | 0.201 ± 0.007 | 0.203 ± 0.01 | 0.211 ± 0.026 |
Brain | 0.727 ± 0.024 | 0.703 ± 0.028 | 0.714 ± 0.015 |
In summary, ex vivo, in vitro and molecular docking study results clearly demonstrated that the potency and selectivity of γ-lactam hydroxamate based TACE inhibitors can be modulated using suitable substituents at the 2nd position of the quinoline ring system. Furthermore, it was observed that suitable substituents at the 2nd position contributed significantly towards improvement in the in vivo TNF-α inhibition activity, which could be correlated with an improved oral bioavailability. Finally, in repeat dose acute toxicity study, the most potent and selective test compound 11p showed no adverse changes related to gross pathology, clinical signs and liver toxicity, indicating that the good selectivity profile of new class γ-lactam hydroxamate based TACE inhibitors over MMPs and ADAM-10 is essential to overcome hepatotoxicity concerns associated with similar class of TACE inhibitors. Overall, these results demonstrated discovery of a new class of highly potent and selective γ-lactam hydroxamate based TACE inhibitors which may be clinically useful for the safe and effective treatment of various inflammatory conditions.
Footnotes |
† ZRC communication No: 326 (Part of PhD work of Mr. A. Argade) |
‡ The authors have declared no conflict of interest. |
§ Electronic supplementary information (ESI) available: Experimental data, materials and methods for in vitro and in vivo assay. See DOI: 10.1039/c0md00261e |
¶ All the animal experiments were conducted according to the internationally valid guidelines following approval by the ‘Zydus Research Center Animal Ethical Committee’. |
This journal is © The Royal Society of Chemistry 2011 |