Ahmed
Touhami
and
John R.
Dutcher
*
Department of Physics, and Advanced Foods and Materials Network—Networks of Centres of Excellence (AFMnet), University of Guelph, Guelph, Ontario, Canada N1G 2W1. E-mail: dutcher@physics.uoguelph.ca; Fax: (+519) 836-9967; Tel: (+519) 824-4120 x53950
First published on 9th October 2008
We have used atomic force microscopy (AFM) imaging and force spectroscopy to study β-lactoglobulin (β-LG) food protein molecules adsorbed onto a mica surface. In particular, we have studied the effect of in situ changes in pH on several different properties: the topographical morphology of the adsorbed β-LG molecules, adhesion of the β-LG molecules to the underlying mica substrate, and the mechanical unfolding of the β-LG molecules. In AFM images, the structure of the adsorbed protein layer was observed to change dramatically with changes in pH. This result was consistent with the mechanical unfolding of single protein molecules within the adsorbed protein layer at different pH values performed using AFM. The short rupture length (∼50 nm) measured for the fully unfolded protein at an acidic pH value of 2.5 is in good agreement with the dominant single molecule population measured previously for this pH value. Unfolding β-LG molecules from the same protein layer at a neutral value of pH = 6.8 resulted primarily in longer rupture lengths, corresponding to dimers of β-LG. AFM force–distance curves collected at pH = 9 were dominated by a large repulsion between the AFM tip and the adsorbed protein layer, which is likely due to the extended nature of the molecules because of irreversible denaturation for pH values greater than 9. This work provides a novel insight into the mechanisms of protein adsorption onto surfaces and shows that AFM force spectroscopy is a promising tool for probing in situ conformational changes in single molecules under various conditions.
In the food research area, whey proteins have been studied extensively because of their importance to the dairy industry, and particularly for modifying the texture of a variety of foods.9 The protein molecules adsorb to the surface of oil droplets during the homogenization process, forming a protective membrane which prevents droplets from coalescing.4,10 The water-soluble globular protein β-lactoglobulin (β-LG) is the most abundant protein in the whey fraction of the milk of many mammals, comprising more than 50% of the total whey proteins. For several decades, β-lactoglobulin has been studied by essentially every biochemical technique available, so there is an extensive literature which describes its properties. Its structure has been determined using X-ray crystallography and NMR.11–14β-LG contains 162 amino acid residues with a molar mass of 18400 g mol−1, and has two disulfide bridges and one free cysteine group. It consists of eight strands of antiparallel β-sheet, with an α-helix and a ninth strand on the external face near the closure of the barrel. Because the eight strands of antiparallel β-sheet form a binding pocket for small hydrophobic ligands such as retinal, fatty acids, alkanes, aliphatic ketones and aromatic compounds, β-LG is categorized as a member of the lipocalin superfamily of proteins, which are structurally similar to plasma retinol-binding proteins. β-LG is used in foods as an emulsifying and gelling agent. Since the protein contains many charged groups, its structure and properties depend strongly on the pH and ionic strength of the media and it is well-established that pH affects the emulsifying properties of β-LG. At neutral pH = 7, β-LG forms dimers that dissociate under acidic conditions.15 At acidic pH values, the protein is very stable and maintains a structure similar to that at neutral pH,16 but has a lower emulsifying capacity and surface activity than at neutral pH.
Atomic force microscopy (AFM) has proven to be a valuable tool to resolve fine surface structure details in situ and this has led to its use in studies of proteins adsorbed onto surfaces.17,18 In addition to allowing the collection of high resolution images of biological samples and the monitoring of conformational changes and biomolecular processes in real time under native conditions, AFM also allows the manipulation of molecules and the measurement of the strength of molecular interactions with piconewton sensitivity. It is relatively straightforward to attach biomolecules to the AFM tip so that the interaction between these molecules and the sample, which could be a protein, nucleic acid, or cell surface, can be measured.19,20 Perhaps one of the most exciting demonstrations of the potential of the AFM to measure biomolecular interactions has been the recent observations of the mechanical unfolding of single proteins. Several groups have shown that a protein, held between the tip and a solid support, can be mechanically unfolded by pulling on the molecule with the AFM tip.21,22 The external mechanical force plays the role of the denaturant and leads to sequential unfolding of the three-dimensional structure of individual proteins.
In the present work we first describe our use of AFM imaging together with AFM scratching to investigate structural changes of adsorbed β-LG layers on an underlying hard mica surface in response toin situ changes in pH. Then we correlate these measurements with changes in protein conformation due to in situ changes in pH probed by AFM-based force spectroscopy.
β-LG was purified from whey protein isolate (New Zealand Dairy Products) by preparative ion chromatography on Q Sepharose (GE Healthcare) with a procedure described by Andrew et al.23 The β-LG solution was dissolved in a 20 mM imidazole buffer at room temperature and then the pH was adjusted to a value of 6.8 by adding HCl. This solution was then filtered through a 0.8 µm filter (Millex-HV, Millipore Co., Billerica, MA). 60 µl of the β-LG solution (0.5 mg ml−1) was incubated with a freshly cleaved muscovite mica surface for 30 min. Longer periods of incubation produced similar results. After incubation, the surface was rinsed with 200 µl of the same imidazole buffer with pH = 6.8 to remove non-adsorbed proteins, to prevent any further adsorption and to prevent drying of the protein layer.
AFM images were recorded in both height and deflection modes. The height images provided quantitative information on sample surface topography. A higher contrast of morphological details was typically observed in the deflection images. Force–distance curves were measured using a z velocity of 0.5 µm s−1, both on approach and retraction, with an interaction time of ∼1 s between the sample and the AFM tip. For all measurements the maximum loading force was 1 nN. In the force–distance curves shown below, the deflection of the cantilever was subtracted from the measured piezo displacement values. For each sample, several images and hundreds of force–distance curves were collected and they were analyzed using the Nanoscope IV software (Version 6.13r1, Digital Instruments, Veeco).
All AFM measurements were performed under imidazole buffered solutions. The pH of the fluid above the adsorbed protein layers was changed in situ to achieve an acidic value of 2.5 and an alkaline value of 9.0, as measured using pH indicator paper, by adding small amounts (typically ∼30 µl) of hydrochloric acid (0.1 M HCl) or sodium hydroxide (0.1 M NaOH), respectively. This procedure allowed the same region of the protein layer to be investigated using the same AFM tip for different pH values.24
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Fig. 1 AFM height (left) and deflection (right) images of β-LG molecules adsorbed onto a mica surface under imidazole buffer and at different pH values. The height profiles correspond to cross-sections of the AFM images along the white lines. (A) Neutral condition: pH = 6.8; (B) alkaline condition: pH = 9; and (C) acidic condition: pH = 2.5. All of the images correspond to a sample area of 2 × 2 µm. |
During AFM imaging using contact mode in buffer solutions, the forces between the tip and the sample are sufficiently small such that there is just a small amount of damage to the soft protein layers (few proteins could be displaced during the scanning), but we observed that continuous scanning with a large value of the applied force could deform the soft surface. Therefore, AFM tip “scratching” of the surface can be used to investigate the adhesion between the protein molecules and the underlying mica surface. In this study, we have used the AFM tip to scratch small areas (1 × 1 µm2) of the adsorbed protein layer, potentially exposing the underlying mica surface, at different pH values using a relatively large value of the applied force of about 10 nN. As shown in Fig. 2A, which was collected at neutral pH (pH = 6.8), there was evidence of scratching of the protein layer from the observation of the accumulation of material at the left and right ends of the horizontal scratches. The scratched area was still uniformly covered by β-LG molecules with vertical and lateral extents that were the same as those in the sample outside the scratched area. The height of the scratched protein layer was estimated from line scans of the height image to be about 2 nm. It was not possible to estimate the thickness of the unscratched protein layer since there were no bare regions on the mica substrate.
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Fig. 2 AFM height (left) and deflection (right) images showing the effect of AFM tip scratching on the adsorbed β-LG layer at different pH values. To scratch the protein layer, small areas (1 × 1 µm2) were first scanned using a large applied force (10 nN), and then 3 × 3 µm2 images were collected of the same areas using smaller forces (maximum of 1 nN). The height profiles correspond to cross-sections of the AFM images along the white lines. (A) Neutral condition: pH = 6.8; (B) alkaline condition: pH = 9; and (C) acidic condition: pH = 2.5. |
On the same sample, we changed the pH value of the solution above the protein layer to an alkaline value (pH = 9) and we performed scratching of the surface using the same value of the tip surface force (10 nN). This force was large enough to remove the adsorbed protein layer, exposing the flat underlying mica surface, as indicated by the flatness of the scratched area and the corresponding height profile shown in Fig. 2B. From line scans of the AFM height images, we estimated the thickness of the adsorbed protein layer to be 0.5 nm.
The pH value of the solution above the protein layers was also changed from a neutral to an acidic value (pH = 2.5). After scratching the protein layer using the same value of the loading force (10 nN), the morphology of the scratched area was significantly different from that observed for pH = 6.8 and pH = 9. As can be seen in Fig. 2C, the scratched area was much rougher than the unscratched areas, with protein aggregates that were about 2 nm in height.
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Fig. 3 (A) Representative curves of the retraction portion of AFM force–distance curves, recorded between the AFM tip and the adsorbed β-LG layer under imidazole buffer at pH = 6.8, showing a sawtooth pattern corresponding to the mechanical unfolding of single β-LG molecules. (B) Histogram of rupture forces measured from hundreds of force–distance curves showing a mean rupture force of 180 pN. (C) Histogram of rupture length showing two peaks at ∼60 nm and ∼120 nm. |
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Fig. 4 Representative curves of the retraction portion of AFM force–distance curves, recorded between the AFM tip and the adsorbed β-LG layer under imidazole buffer at pH = 9. A large repulsion occurring over a distance between the AFM tip and the protein layer of ∼100 nm results from the denaturation of the β-LG molecules at this pH value, which exposes two extra negative charges. |
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Fig. 5 (A) Representative curves of the retraction portion of AFM force–distance curves, recorded between the AFM tip and the adsorbed β-LG layer under imidazole buffer at pH = 2.5, showing a sawtooth pattern corresponding to the mechanical unfolding of single β-LG molecules. (B) Histogram of rupture forces measured from hundreds of force–distance curves showing a mean rupture force of 260 pN. (C) Histogram of rupture length showing a mean rupture length of 50 nm. |
We note that the significant changes observed in the interaction between the AFM tip and the protein layer with changes in pH, e.g. rupture force and rupture distance histograms, were reversible for changes in pH between neutral and acidic values, but not for changes in pH between the neutral and alkaline values.
When the pH value of the solution above the adsorbed protein layer was changed to an alkaline value (pH = 9), the interaction between the β-LG molecules and the mica surface was dramatically affected such that it was possible to scratch and remove the adsorbed protein layer to expose the underlying mica surface (Fig. 1B). Because the maximum height (∼1.5 nm) measured for the adsorbed layer was less than half the size of the protein in its native conformation (∼3.6 nm), it is clear that the protein was denatured and partially unfolded at this pH value but not tightly bound to the mica substrate. Thus, the net charge of the β-LG molecules, which is −2 at this value of pH,32 affected its surface-active properties. In addition we have found that when the pH of the same adsorbed protein layer was changed to a neutral value of pH = 6.8 after being held at pH = 9 for about 1 h, the morphology of the film was indistinguishable from that observed at pH = 9 (Fig. 1B). This finding confirms that the β-LG molecules undergo an irreversible denaturation at alkaline pH values, as has been shown previously using various techniques.28,33 Furthermore, it was demonstrated in several studies that the irreversible alkaline denaturation of β-LG occurs in two stages. In the first stage, the α-helical content decreases significantly and only certain β-sheets unfold. Then, in the second stage of the alkaline denaturation, the remaining β-sheets unfold though not completely. This two stage denaturation process is consistent with the molecular size distribution given by line scans of the AFM height images in the present study (ranging from 0.5 to 1.5 nm, as shown in Fig. 1B).
The primary cause of the aggregation of the β-LG molecules with changes in pH is thought to involve electrostatic interactions between molecules.34 In some cases, protein aggregation proceeds by random sticking of the molecules, leading to unstructured aggregates; in other cases the proteins form specific contacts, leading to aggregates of well-defined structures such as amyloid fibres. In our case, at pH = 2.5, the AFM results indicate that the aggregates that are formed have a thickness of two or three protein monomers with no clearly defined structure (Fig. 1C). In particular, the structure of the aggregates observed in our study differs from those formed after heat-induced denaturation at pH = 2 under salt (NaCl) conditions.35 Also, our AFM images revealed that β-LG molecules at pH = 2.5 adhere strongly to the mica surface and the high force (10 nN) used to scratch the protein layer results only in the disruption of some of the protein–protein structures. In addition, the structural changes of the protein layer induced by changing the pH from pH = 6.8 to pH = 2.5 were reversible: by subsequently increasing the pH value back to 6.8, AFM imaging revealed a similar morphology to that observed originally at pH = 6.8 (Fig. 1A).
At pH = 2.5, a peak with a relatively large maximum force is typically present in the retraction portion of the force–distance curves at a small value of separation distance (<20 nm) (see Fig. 5A). This peak indicates a substantial adhesion between the AFM tip and the protein molecules (due to the large value of the maximum force), as well as a substantial adhesion of the protein molecules to the underlying mica substrate and between the protein molecules themselves (due to the rupture of the bond between the AFM tip and the protein molecule at a relatively small distance). The adhesion between the AFM tip and the protein layer is likely to occur because the protein molecules are positively charged while the AFM tip is negatively charged at this value of pH. The charge on each individual molecule varies from zero at the isoelectric point of pH = 5.1 to around +20 at pH = 2, as reported previously.37 Since the β-LG molecules strongly interact with each other and with the mica surface (negatively charged) under acidic conditions, the β-LG molecules show a significant resistance to AFM mechanical unfolding. As for the neutral pH condition, the mechanical unfolding of the β-LG molecules occurs in multiple steps, but with significantly larger forces (∼260 pN for the average unfolding force, see Fig. 5). The short rupture length (average ∼50 nm) is very close to the length of a single, fully unfolded β-LG molecule. However, a significant fraction (∼20%) of the force–distance curves show a longer rupture length with a maximum at ∼120 nm. This result is consistent with earlier work which shows that, for pH<3, the dimers dissociate into monomers while preserving their native conformations.28,33 We conclude that β-LG shows a remarkable stability to low values of pH, resisting denaturation even at pH = 2.5. A fundamental understanding of the driving forces and mechanisms involved in protein aggregation, however, is still outstanding.
It should be noted that all transitions in β-LG that occur at pH values between pH = 2 and pH = 9 do not cause any appreciable changes in the native-like β-barrel conformation of β-LG. In contrast, for pH>9, β-LG molecules undergo an irreversible unfolding transition with global disruption of both secondary and tertiary structures.28,32 The observation of a large repulsion between the AFM tip and the adsorbed protein layer in AFM force–distance curves collected at pH = 9 is likely because of the net negative charge on the β-LG molecules and the extended nature of the molecules due to the irreversible unfolding transition at large values of pH. We propose that in our measurements performed under alkaline conditions, the pH of the protein layer may be slightly higher than 9 since the β-LG denaturation was irreversible and the very large electrostatic repulsion between the tip and the protein layer persisted after changing the pH to a neutral value. This irreversible denaturation for pH values greater than 9 has been attributed to thiol/disulfide exchange caused by the interaction between the free cysteine group and the broken disulfide bond.38
Footnote |
† Submitted as a contribution to the Soft Matter web theme on Food Science. |
This journal is © The Royal Society of Chemistry 2009 |