O interaction stabilize selenoxides at naphthalene 1,8-positions: structural and theoretical investigations†Satoko Hayashia, Waro Nakanishi*a, Atsushi Furutaa, Jozef Drabowiczb, Takahiro Sasamoric and Norihiro Tokitohc
aDepartment of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan. E-mail: nakanisi@sys.wakayama-u.ac.jp; Fax: +81 73 457 8253; Tel: +81 73 457 8253
bCenter of Molecular and Macromolecular Studies, Polish Academy of Science, Sienkiewicza, 112, 90-363, Lodz, Poland
cInstitute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan
First published on 17th November 2008
Bis-selenides
(LL), such as 8-[MeSe(X)]-1-[MeSe(Z)]C10H6 (1
(LL)), 8-[EtSe(X)]-1-[EtSe(Z)]C10H6 (2
(LL)), 8-[p-YC6H4Se(X)]-1-[MeSe(Z)]C10H6 (3
(LL)) and 8-[p-YC6H4Se(X)]-1-[p-YC6H4Se(Z)]C10H6 (4
(LL)) were oxidized with ozone at 0 °C, where (X, Z) = (lone pair, lone pair) for LL. Bis-selenoxides, 1
(OO), 3
(OO) and 4
(OO) where (X, Z) = (oxygen, oxygen), were obtained in the oxidation of 1
(LL), 3
(LL) and 4
(LL), respectively, via corresponding selenide-selenoxides, 1
(LO), 3
(LO) and 4
(LO), respectively. A facile Se–C bond cleavage was observed in 2
(LL). The structures of 1
(LO) and 1
(OO) were determined by the X-ray analysis. Three Se⋯Se
O atoms in 1
(LO) and four O
Se⋯Se
O atoms in 1
(OO) align linearly. While the non-covalent Se⋯Se
O 3c–4e interaction operates to stabilize 1
(LO), the non-covalent O
Se⋯Se
O 4c–4e interaction would not stabilize 1
(OO). The 3c–4e interaction must play an important role to control the stereochemistry of selenoxides. The 8-G-1-[MeSe(OH)2]C10H6 (n
(OH·OH)) are the key intermediates in the racemization of 8-G-1-[MeSe(O)]C10H6 (n
(O)) in solutions, where G = SeMe (1), H (5), F (6), Cl (7) and Br (8). Energies of n
(OH·OH), relative to n
(O), are evaluated based on the theoretical calculations. G of SeMe is demonstrated to operate most effectively to protect from racemization of selenoxides among n = 1 and 5–8, since the relative energies for G of cis- and trans-SeMe are largest.
O type.2,4,7Naphthalene 1,8-positions supply a good system to investigate such interactions, since the non-bonded distances between heteroatoms at the positions are close to the sum of the van der Waals radii minus 1 Å.8,9 Various types of non-covalent interactions are detected in naphthalene 1,8-positions.8–11 The σ-type three center-four electron interactions (σ(3c–4e)),12–14σ(2c–4e),12π(2c–4e),12 distorted π(2c–4e),12 and Z4 4c–6e13 are typical examples. Such non-covalent interactions are demonstrated to control the fine structures of molecules.15 Recently, we investigated fine structures of 8-G-1-(arylseleninyl)naphthalene with G = H, F, Cl and Br, together with the factors to control the structures, as the first step to control the stereochemistry of selenoxides.16 The factors are called G, O and Y dependences, which originate from the np(G)⋯σ*(Se–O), np(O)⋯π(Nap) and np(O)⋯π(Ar) interactions, respectively.16
We paid much attention to G = MeSe and ArSe in 8-G-1-(arylseleninyl)naphthalenes, since many conformers are plausible around the two Se–CNap bonds, relative to the case of G = H and halogens. Scheme 1 shows the orbitals taking part in the non-covalent Se⋯Se
O interaction. A bis-selenide contains double ns(Se), np(Se), σ(Se–C) and σ*(Se–C) orbitals. However, ns(O), np(O), np′(O), σ(Se–O) and σ*(Se–O) appear newly with the quit of an np(Se), when a selenide-selenoxide is formed from the bis-selenide.
The oxidation and formation of 8-[2RSe(X)]-1-[1RSe(Z)]C10H6 (1 (1R = 2R = Me), 2 (1R = 2R = Et), 3 (1R = Me, 2R = p-YC6H4: Y = H (a), MeO (b) and NO2 (d)) and 4 (1R = 2R = p-YC6H4: Y = H (a) and tBu (c)) are investigated for LL where (X, Z) = (lone pair, lone pair), LO (lone pair, oxygen) and OO (oxygen, oxygen) (Chart 1). The reactions are easily controlled and each process is followed by the spectroscopic method. Non-bonded O
Se⋯Se
O interactions are also the subject of interest.
The structures around the naphthyl group (Nap) in 8-G-1-RSeC10H6 are well explained by three types, type A (A), B and C.8c,d,f–h,17,18 The combined notation are used to specify the structures of 1–4 with G = RSe, where the notation, such as AA, BA or CA, shows the conformers around the two CNap–Se bonds. Scheme 2 draws the notations employed in this work, exemplified by 1
(LO).
The structures of 1
(LO) and 1
(OO) are determined by X-ray crystallographic analysis. Quantum chemical (QC) calculations are performed on 1
(LO) and 1
(OO), to elucidate the role of the Se⋯Se
O interaction in 1
(LO) and the O
Se⋯Se
O interaction in 1
(OO) as the factor to control the fine structures. Orbitals of two Se atoms in 1
(LO) and 1
(OO) must overlap directly with each other, which would stabilize the fine structures. QC calculations are also performed on 8-G-1-[MeSe(X)]C10H6 [G = MeSe (1), H (5), F (6), Cl (7) and Br (8) with X = lone pair (L), O (O), OH+ (OH+) and O2H2 (OH·OH)], where OH·OH must be the key intermediate in the racemization of 1 and 5–8, in the presence of a trace of water. The relative energy [ΔE = E(n
(OH·OH)) − (E(n
(O)) + E(H2O)) (n = 1 and 5–8)] is evaluated: that for G = MeSe is largest among them. The larger value must correspond to a selenoxide with the stronger resistance for racemization, although n
(OH·OH) is not the transition state. The G⋯Se
O interactions containing the Se⋯Se
O and O
Se⋯Se
O interactions are also analyzed with the natural orbital (NBO)19,20 and atoms-in-molecules (AIM)21,22 analyses.
Oxidation of 1,8-bis(selanyl)naphthalenes
(LL) with ozone is well controlled and monitored, which gives 1,8-bis(seleninyl)naphthalenes (OO) via 8-selanyl-1-seleninylnaphthalenes (LO). Factors to control the fine structures of 1
(LO) and 1
(OO) are clarified based on QC calculations, after determination of the structures. The Se⋯Se
O interaction is demonstrated to control the fine structure of 1
(LO), whereas the role of the O
Se⋯Se
O interaction in 1
(OO) is critically discussed. The role of G in 1 and 5–8 in the racemization process is also evaluated.
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Scheme 1 Orbitals taking part in the non-bonded Se⋯Se O interactions in naphthalene 1,8-positions. | ||
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Scheme 2 Structures around naphthyl group in 8-G-1-[RSe(X)]C10H6, exemplified by 1 (LO). | ||
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| Chart 1 Bis(selanyl)naphthalenes, 1–4, together with 5–8. | ||
(LL): n = 1–4) were oxidized with ozone in the methylene dichloride solution of each bis-selenide at 0 °C. The bis-selenides (n
(LL)) gave corresponding bis-selenoxides (n
(O)) via corresponding selenide-selenoxides (n
(LO)), except for 2
(LL). While 1
(LL) gave 1
(LO), followed by the quantitative formation of 1
(OO), a facile Se–C bond cleavage occurred on the oxidation of 2
(LL), resulting in the formation of naphtho-1,8-[c,d]-1,2-diselenole (9).23β-Elimination of the selenoxide may be responsible for the facile Se–C bond cleavage. In the case of 3
(LL), the methylselanyl Se atoms were attacked exclusively. 3
(LO) were consumed to produce the corresponding 3
(OO) with more ozone. 4
(LO) were also produced from the corresponding 4
(LL) with ozone, followed by the formation of the corresponding 4
(OO), respectively. The results are summarized in Chart 1. The reactions are well followed by NMR.
(LO) and 1
(OO)
(LO) and 1
(OO) were obtained via slow evaporation of methylene dichloride-hexane solutions and one of suitable crystals was subjected to X-ray crystallographic analysis for each compound.24 Only one type of structure corresponds to each of 1
(LO) and 1
(OO) in the crystals. Table 1 shows the crystallographic data of 1
(LO) and 1
(OO). Fig. 1 shows the structures of 1
(LO) and 1
(OO).25 The packing structure of 1
(OO) is shown in Fig. S1 of the Electronic Supplementary Information (ESI†). Selected interatomic distances, angles and torsional angles of the compounds 1
(LO) and 1
(OO) are collected in Table 2, together with those of 1
(LL), which contains two types, 1
(LL)A and 1
(LL)B.26The structures of 1
(LO) and 1
(OO) are all AA for two methyl groups (Fig. 1 and Table 2).15 The planarity of the naphthyl (Nap) planes is very good. All Se–O bonds are placed in the naphthyl plane. The superior tendency of the Se–O bonds to stay on the naphthyl plane (O dependence)16 must be the driving force for the structures of 1
(LO) and 1
(OO). Three Se⋯Se–O atoms align linearly (∠SeSeO = 173.31(15)°) and the Se–O bond is almost perpendicular to another CNapSeCMe plane in 1
(LO). The non-covalent np(Se)⋯σ*(Se–O) 3c–4e interaction operates effectively to keep the Se–O bond on the naphthyl plane in 1
(LO) (G dependence).16 These results show that the structure of 1
(LO) is well stabilized by the O and G dependences observed in 1-naphthyl selenoxides.16
On the other hand, there is no np(Se) in 1
(OO). Therefore, the G dependence of the np(Se)⋯σ*(Se–O) type cannot operate in 1
(OO). Consequently, the driving force for the structure must come from the O dependence for both Se–O bonds. Namely, the non-covalent O–Se⋯Se–O σ(4c–4e) interaction must be carefully examined as a factor to stabilize the fine structure of 1
(OO), although the non-bonded Se⋯Se distances are less than the sum of van der Waals radii by ca. 0.65 Å.27 The σ(4c–4e) interaction seems not so important.
How does G of MeSe control the fine structure and the behavior? QC calculations are performed on 1 and 5–8.
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Fig. 1 Structures of 1 (LO) (a) and 1 (OO) (b) with atomic numbering scheme for selected atoms (thermal ellipsoids are shown at the 50% probability level). | ||
(LO) and 1
(OO)
1 (LO) | 1 (OO) | |
|---|---|---|
| Empirical formula | C12H12OSe2 | C12H12O2Se2·2.5H2O |
| Formula weight | 330.14 | 391.18 |
| Temperature/K | 298(2) | 103(2) |
| Crystal system | Monoclinic | Monoclinic |
| Space group | P21/n (#14) | C2/c (#15) |
| a/Å | 5.8460(19) | 25.549(9) |
| b/Å | 14.473(3) | 5.8653(18) |
| c/Å | 14.1490(16) | 20.850(8) |
| β/° | 97.660(17) | 117.329(4) |
| V/Å3 | 1186.5(5) | 2775.6(16) |
| Z | 4 | 8 |
| Dc/g cm−3 | 1.848 | 1.872 |
| F(000) | 640 | 1544 |
| Reflections observed [I > 2σ(I)] | 2200 | 2435 |
| Parameters | 136 | 190 |
| R1 [I > 2σ(I)] | 0.032 | 0.021 |
| R1 [all data] | 0.082 | 0.022 |
| ωR2 [I > 2σ(I)] | 0.065 | 0.053 |
| ωR2 [all data] | 0.077 | 0.054 |
| Goodness-of-fit on F2 | 1.029 | 1.109 |
(LO) and 1
(OO), together with those of 1
(LL)
1 (LL)Aa | 1 (LL)Ba | 1 (LO) | 1 (OO) | |
|---|---|---|---|---|
| a Ref. 26. | ||||
| Interatomic distances | ||||
| Se1–Se2 | 3.051(4) | 3.064(4) | 3.1587(10) | 3.1512(8) |
| Se1–C1 | 1.929(4) | 1.932(3) | 1.983(5) | 1.959(2) |
| Se1–C11 | 1.944(4) | 1.953(4) | 1.954(5) | 1.940(2) |
| Se1–O1 | 1.653(4) | 1.6771(15) | ||
| Se2–C9 | 1.926(4) | 1.932(4) | 1.928(5) | 1.970(2) |
| Se2–C12 | 1.944(4) | 1.949(4) | 1.938(6) | 1.934(2) |
| Se2–O2 | 1.680(15) | |||
| Angles | ||||
| Se2–Se1–C11 | 164.47(3) | 146.46(3) | 85.93(16) | 88.26(7) |
| Se2–Se1–O1 | 173.31(15) | 167.54(5) | ||
| Se1–Se2–C12 | 150.34(3) | 159.73(3) | 85.65(18) | 89.41(7) |
| Se1–Se2–O2 | 167.51(5) | |||
| Se1–C1–C10 | 122.9(3) | 123.9(3) | 126.9(4) | 124.33(16) |
| C1–Se1–C11 | 99.29(16) | 98.41(16) | 96.0(2) | 94.73(9) |
| C1–Se1–O1 | 101.1(2) | 102.69(8) | ||
| C11–Se1–O1 | 100.7(2) | 102.85(9) | ||
| Se2–C9–C10 | 123.9(3) | 122.9(3) | 124.1(4) | 124.67(16) |
| C9–Se2–C12 | 99.27(16) | 98.50(16) | 98.1(2) | 93.38(9) |
| C9–Se2–O2 | 102.21(8) | |||
| C12–Se2–O2 | 102.29(9) | |||
| C1–C10–C9 | 126.4(3) | 127.2(3) | 127.0(4) | 128.1(2) |
| Torsional angles | ||||
| Se1–C1–C10–C5 | 173.5(2) | −176.0(2) | −177.6(4) | 179.19(15) |
| C10–C1–Se1C11 | −154.1(3) | 136.8(3) | 82.8(4) | −86.49(19) |
| C10–C1–Se1–O1 | −175.0(4) | 169.19(17) | ||
| Se2–C9–C10–C5 | 172.2(2) | −170.2(2) | 178.8(4) | 178.90(15) |
| C10–C9–Se2–C12 | −138.8(3) | 148.0(3) | 84.6(4) | −87.10(19) |
| C10–C9–Se2–O2 | 169.54(18) | |||
| O1–Se1–Se2–O2 | 140.3(3) | |||
(LO) with the B3LYP/6-311+G(d) method of the Gaussian 98 program.28–30 QC calculations revealed energy profiles of the compounds.31Table 3 collects the results of the QC calculations. The NBO analysis19,20 were performed on 1
(LO) and 1
(OO) with the B3LYP/6-311+G(d) method. The results are shown in Table 4. The AIM parameters21,22 are calculated for 1
(LO) and 1
(OO) with the Gaussian 03 program32 employing the 6-311+G(3df) basis sets for Se with the 6-311+G(3d,2p) basis sets for C and H at the B3LYP level. They are analyzed employing the AIM 2000 program.33Table 5 collects the results of AIM calculations.Indeed, the results of QC calculations essentially correspond to those in the gas phase, but the factors to control and/or stabilize the structures in gas phase must also operate in solid states and in solutions. Therefore, it must be instructive to consider those predicted by QC calculations, although we must be careful for the crystal packing effect in crystals and the solvent effect in solutions, since such effects often larger than the predicted factors.
The effect of G to stabilize 8-G-1-[MeSe(X)]C10H6 [G = MeSe (1), H (5), F (6), Cl (7) and Br (8) with X = lone pair (L), O (O), OH+ (OH+) and O2H2 (OH·OH)] will be discussed in detail, here. The results clarified the factors for the racemization of selenoxides. n
(OH·OH) (n = 1 and 5–8) must be the key intermediates in the racemization of n
(O), in the presence of (a trace of) water in solutions.
| Form | O: A/AAb | OH+: A/AAb | OH·OH: AC |
|---|---|---|---|
a Calculated with the B3LYP/6-311+G(d) method.b A for 5–8 and AA for 1.c Evaluated based on the values of E(H2O2) = −151.5891 au, E(H2O) = −76.4438 au and E(OH−) = −75.8181 au calculated with the same method.d Relative to that of the corresponding n (O): A.e Relative to the same structure derived from 5 (G = H) being given in parenthesis.f 7.1 kJ mol−1 from the corresponding species of 1 (G = trans-MeSe; O): AA. | |||
| 5 (G = H) | −2902.0303 | −2902.4017 | −2978.4686 |
| Qn(Se) | 1.309 | 1.307 | 1.324 |
| Qn(O) | −0.968 | −0.837 | −0.996, −0.993 |
| Qn(H) | 0.497 | 0.433, 0.433 | |
| +Wc | −2978.4741 | −2978.2198 | −2978.4686 |
| Δde | as 0.0 | 667.7 (as 0.0) | 14.4 (as 0.0) |
| 6 (G = F) | −3001.3000 | −3001.6744 | −3077.7371 |
| +Wc | −3077.7438 | −3077.4925 | −3077.7371 |
| Δde | as 0.0 | 659.8 (−7.9) | 17.6 (3.2) |
| 7 (G = Cl) | −3361.6478 | −3362.0250 | −3438.0833 |
| +Wc | −3438.0916 | −3437.8431 | −3438.0833 |
| Δde | as 0.0 | 652.4 (−15.2) | 21.8 (7.4) |
| 8 (G = Br) | −5475.5651 | −5475.9442 | −5552.0007 |
| +Wc | −5552.0089 | −5551.7623 | −5552.0007 |
| Δde | as 0.0 | 647.4 (−20.2) | 21.5 (7.1) |
| 1 (G = trans-MeSe) | −5342.8896 | −5343.2854 | −5419.3241 |
| +Wc | −5419.3334 | −5419.1035 | −5419.3241 |
| Δde | as 0.0 | 603.6 (−64.1) | 24.4 (10.0) |
| 1 (G = cis-MeSe) | −5342.8869 | −5343.2821 | −5419.3214 |
| +Wc | −5419.3307 | −5419.1002 | −5419.3214 |
| Δde | as 0.0f | 612.3 (−55.4) | 31.5 (17.1) |
| D; A | np(G); σ*(Se–O) | np(G): σ*(Se+–OH) |
|---|---|---|
| a The 6-311+G(d) basis sets being employed.b In kcal mol−1.c Corresponding to the ns(G)⋯σ*(Se+–OH) interaction.d 0.76 kcal mol−1 for the ns(Se)⋯σ*(Se–O) type interaction.e The 6-311+G(3df) basis sets being employed for Se with the 6-311+G(3d,2p) basis sets for C and H.f Corresponding to the ns(Se)⋯σ*(Se–O) interactions. | ||
| G = F | 1.44 | 9.15 (0.87)c |
| G = Cl | 3.29 | 13.65 (1.09)c |
| G = Br | 3.73 | 27.95 (1.19)c |
| G = cis-SeMe | 4.77d | 34.99 (1.76)c |
| G = trans-SeMe | 5.52 | 41.86 (2.69)c |
| G = trans-SeMee | 5.86 | |
| G = trans-Se(O)Mee | 1.53 (×2)f | |
(LO) and 1
(OO), calculated with the NBO methoda
| Compound | ro(Se, Se)/Å | ρb(rc)/eao−3 | Δρb(rc)/eao−5 | Hb(rc)/au |
|---|---|---|---|---|
| a The 6-311+G(3df) basis sets being employed for Se and the 6-311+G(3d,2p) basis sets for C and H. | ||||
1 (LO) | 3.2521 | 0.0195 | 0.0420 | −0.0005 |
1 (OO) | 3.2851 | 0.0160 | 0.0393 | 0.0002 |
(OH·OH)).4a–dScheme 3 shows a hypothetical racemization process of optically active n
(O*) vian
(OH·OH).Protonation of n
(O*) occurs at O of an optically active isomer of n
(O*: R) to give n
(O*H+: R) at the initial stage of the reaction. n
(OH·OH) will form in the reaction of n
(O*H+: R) with water followed by the deprotonation to yield n
(OH·OH). Elimination of water from n
(OH·OH) results in the racemization, since of n
(OH·OH) is not optically active as a whole. Similar reactions occur starting from n
(O*: S) to yield n
(OH·OH) vian
(O*H+: S), which also leads to racemization. Water may originate from the solvent and the racemization would proceed under the neutral conditions. The stability of n
(OH·OH) must affect on the rates of racemization for the optical active selenoxides.
The effect of G on the stability of 8-G-1-[MeSe(OiHj)]C10H6 [1 and 5–8: L (i = j = 0), O (i = 1, j = 0), OH+ (i = j = 1) and OH·OH (i = j = 2)] are examined based on the QC calculations. The results of QC calculations performed with the B3LYP/6-311+G(d) method are collected in Table 3. Table 3 also contains natural charges (Qn) of Se and O calculated employing the natural population analysis.20Scheme 4 shows optimized structures of the global minimum for each of 1
(LL), 1
(LO) and 1 (LOH+), together with the three types, AA′, BB and AC, for 1 (LOH·OH). The values for AC of n
(LOH·OH) are given in Table 3, since AC is most stable among the three for each.34
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Scheme 3 Mechanism for racemization of n (O*) vian (OH·OH) (n = 1 and 5–8). | ||
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| Scheme 4 Optimized structures for 1 (G = SeMe) and the derivatives. | ||
Energy differences of the reactions in Scheme 3 are examined based on the values shown in Table 3. The energy of n
(O) + H2O (E(n
(O) + H2O)) is taken as the standard for each, for convenience of comparison. How are the selenoxides stabilized by G at the 8-position? The effect of G on the stabilization of selenoxides is examined before discussion the energy profile shown in Scheme 3.
Eqn (1) shows the energies of n
(L) + H2O2 (E(n
(L) + H2O2)) relative to E(n
(O) + H2O) [ΔE(n
(LO) = E(n
(L) + H2O2) −E(n
(O) + H2O)) (see Table S1 in the ESI†). Similarly, eqn (2) and (3) exhibit ΔE(n
(OH+)) and ΔE(n
(OH·OH)),35 respectively, which are defined as [E(n
(OH+) + HO−) −E(n
(O) + H2O)] and [E(n
(OH·OH)) −E(n
(O) + H2O)], respectively.36
ΔE(n (LO)) = E(n (L) + H2O2) −E(n (O) + H2O)G = H (121.8 kJ mol−1) < F (131.3) < cis-MeSe (133.9) < Cl (136.8) ≤ Br (137.6) < trans-MeSe (141.0) | (1) |
ΔE(n (OH+)) = E(n (OH+) + HO−) −E(n (O) + H2O)G = H (667.7 kJ mol−1) > F (659.8) > Cl (652.4) > Br (647.4) ≫cis-MeSe (605.2) > trans-MeSe (603.6) | (2) |
ΔE(n (OH·OH)) = E(n (OH·OH)) −E(n (O) + H2O)G = H (14.4 kJ mol−1) < F (17.6) < Cl (21.8) ≈ Br (21.5) < trans-MeSe (24.4) < cis-MeSe (31.5) | (3) |
The order in eqn (1) corresponds the energy lowering effect by the G⋯Se–O interactions in the formation selenoxides relative to the G⋯Se–C interactions in selenides. However, we must be careful to examine the values for G = cis-MeSe and trans-MeSe, since the structure of the corresponding selenide is commonly CC (see Table S1 in the ESI†).
Eqn (2) exhibits that the protonation on the seleninyl O atom occurs more easily in the order of G = H < F < Cl < Br ≪cis-MeSe < trans-MeSe. The results show that the protonation occurs more easily when G become better donors, especially for G = MeSe. The evaluated ΔE(n
(OH+)) values are very large in magnitudes, however, they do not mean that the process is very difficult to occur. The large magnitudes are the results of the calculations for the charge separated species of the n
(OH+) + HO− type. Only the relative values are important, since protonation will occur easily in solutions. Resulting hypervalent np(G)⋯σ*(Se–OH+) interactions stabilize further the species in the order shown in eqn (2), relative to the case of the selenoxides.
The activation energies for the racemization of optically active selenoxides are closely related to the values shown in eqn (3), although they are the energies for the intermediates, n
(OH·OH). The activation energies are expected to increase in this order. The activation energy for G = cis-MeSe is predicted to be larger than that with trans-MeSe. However, cis-MeSe and trans-MeSe isomers interconvert with each other. Therefore, it may be better to evaluate the value by G = trans-MeSe under the experimental conditions: The activation energy of 1
(LO) with G = MeSe is estimated to be about 10 kJ mol−1 larger than that of 5 (L) with G = H and the former is also larger than the case of G = Br by ca. 3 kJ mol−1. Fig. 2 summarizes the effect of G given in eqn (2).
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Fig. 2 Energies of n (OH·OH), relative to n (O) for n = 1 and 5–8. | ||
G at the 8-position will protect sterically from the racemization of an optical active n
(O*). G must stabilize the optical active n
(O*) and the protonated n
(O*H+) whereas G would destabilize n
(OH·OH). The steric congestion at the backside of the Se+–OH bond in n
(O*H+) by G will block the space for H2O to attack to produce n
(OH·OH) (Scheme 4). We must be careful, since G could also stabilize n
(OH·OH) in some cases. The calculated values might correspond to the total effects of the electronic and steric effects. Energy profiles for the racemization evaluated by above calculations must contain main factors. The energies for the transition states must be close to those of the intermediates, n
(OH·OH).
| E(2): G = F (1.44) < Cl (3.29) < Br (3.73) < cis-MeSe (4.77) < trans-MeSe (5.52) | (4) |
The E(2) values are also evaluated for 1
(LO) and 1
(OO), employing the 6-311+G(3df) basis sets for Se and the 6-311+G(3d,2p) basis sets for C and H at the B3LYP level.38Table 4 also contains the values. The np(G)⋯σ*(Se–O) interaction are evaluated to be 5.9 kcal mol−1 for 1
(LO)39 and as 1.5 (× 2) kcal mol−1 for the ns(G)⋯σ*(Se–O) interactions in 1
(OO). The larger value for 1
(LO) relative to 1
(OO) implies the more effective interaction of the np(G)⋯σ*(Se–O) type in 1
(LO). The contribution of the 4c–4e interaction of the O–Se⋯Se–O type was not detected by the NBO analysis. Fig. 3 summarizes the interactions.
![]() | ||
Fig. 3 The np(G)⋯σ*(Se–O) interaction in 1 (LO) and the ns(G)⋯σ*(Se–O) interactions in 1 (OO) evaluated by the NBO method. | ||
The nature of the np(G)⋯σ*(Se–O) interaction in 1
(LO) and the ns(G)⋯σ*(Se–O) interactions in 1
(OO) are evaluated based on the AIM analysis, next.
(LO) and 1
(OO)
(LO) and 1
(OO). The 6-311+G(3df) basis sets are employed for Se and the 6-311+G(3d,2p) basis sets for C and H at the B3LYP level. Table 5 collects the AIM parameters of 1
(LO) and 1
(OO) for the bond critical points (BCPs: rc) on the interaction lines between non-bonded Se atoms.The low values of electron densities at BCPs (ρb(rc)) in 1
(LO) and 1
(OO) (0.016–0.020 eao−3) show that the interactions are ionic in nature. Laplacian values of ρb(rc) (Δρb(rc)) are both positive, whereas the total electron energy densities at BCPs (Hb(rc)) for 1
(LO) is negative but it is positive for 1
(OO). The results strongly suggest that the np(G)⋯σ*(Se–O) interaction in 1
(LO) is the CT interaction in nature similarly to the case of R2Se⋯Br2 (MC) but the ns(G)⋯σ*(Se–O) interactions in 1
(OO) seems weaker than such CT interactions.40
Fig. 4 shows the counter map of ρb(rc) in the SeSeC9 plane for 1
(LO), together with BCPs (
), ring critical points (
), bond paths and the interaction lines. BCP are detected on the Se⋯Se and O⋯2H interaction lines. The BCP on the Se⋯Se interaction line well visualize the np(Se)⋯σ*(Se–O) interaction in 1
(LO). While BCP is also detected on the O⋯2H interaction line, the interaction is very small. A similar counter map is also drawn for 1
(OO), which is shown in Fig. S2 of the ESI.†
![]() | ||
Fig. 4 Contour map of ρb(rc) for 1 (LO) in the SeSeC9 plane, together with BCPs ( ), ring critical points ( ) and bond paths. The contours [eao−3] are at 2l (l = ±8, ±7,…0) and 0.0047 (heavy line). Two Me groups are located upside and downside of the SeSeC9 plane. The C2, C3, C6 and C7 atoms with the C–H bonds deviate substantially from the plane. | ||
(LO)) and 1,8-bis(methylseleninyl)naphthalene 1
(OO) revealed that the three Se⋯Se
O atoms in 1
(LO) and the four O
Se⋯Se
O atoms in 1
(OO) align linearly. All Se–O bonds are placed in the naphthyl plane. The superior tendency for the Se–O bonds to stay on the naphthyl plane (O dependence) must be the driving force for the fine structures of 1
(LO) and 1
(OO). The noncovalent np(Se)⋯σ(Se–O) 3c–4e interactions (G dependence) operate effectively to stabilize the structure of 1
(LO). On the other hand, the driving force for the structure of 1
(OO) must mainly come from the O dependence for each Se–O bond in 1
(OO), since the G dependence cannot operate without np(Se).QC calculations clarify the factors that protect from racemization of selenoxides. The energies of 8-G-1-[MeSe(OH)2]C10H6 from (8-G-1-[MeSe(O)]C10H6 + H2O) are shown to be in an order of G = H (14.4 kJ mol−1) < F (17.6) < Cl (21.8) ≈ Br (21.5) < trans-SeMe (24.4) < cis-SeMe (31.5). The activation energies for the racemization should increase in this order, since 8-G-1-[MeSe(OH)2]C10H6 must be the key intermediates. The activation energy of 1 (LO: G = MeSe) is evaluated to be larger than that of 5 (L: G = H) and 8 (L: G = Br) by 10 and 3 kJ mol−1, respectively. The results will help to design the optically stable selenoxides. The NBO and AIM analyses support the discussion and visualize the interactions.
Investigations on the chiral 3a
(LO), prepared in the oxidation of 3a
(LL) with chiral reagents, are in progress. Details will be reported elsewhere.
(LL)). To a solution of the dianion of naphtho[1,8-c,d]-1,2-diselenole, which was prepared by reduction of the diselenole 923 (1.03 g, 3.64 mmol) with NaBH4 in an aqueous THF solution, was added methyl iodide (1.29 g, 9.06 mmol) at room temperature. After a usual workup, the crude was purified by column chromatography (flash column, SiO2, hexane). Recrystallization of the chromatographed product from hexane gave 1
(LL) as colorless prisms in 98% yield, mp 85.0–85.5 °C, 1H NMR (300 MHz, CDCl3, δ, ppm, TMS): 2.33 (s, 6H), 7.32 (t, 2H, J = 7.7 Hz), 7.70 (dd, 2H, J = 1.2 and 8.2 Hz), 7.73 (dd, 2H, J = 1.2 and 7.5 Hz); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS): 13.3, 125.7, 128.3, 131.9, 132.3, 135.3, 135.6; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 231.4. Anal. Calc. for 1
(LL) (C12H12Se2): C, 45.88; H, 3.85%. Found: C, 45.73; H, 3.77%.
(LO)). 1
(LL) (0.98 mg, 3.12 mmol) was dissolved in 20 mL of CH2Cl2 and the solution was bubbling with the ozone for 5 min. TLC was checked for the completion of the reaction (rf = 0.07 (chloroform)). Then the solution was evaporated and dried in vacuo. The crude product was purified by column chromatography (flash column, Al2O3, CH2Cl2). 1
(LO) gave 85% yield as colorless powder, mp 129.8–130.1 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.29 (s, 3H), 2.78 (s, 3H), 7.48 (t, J 7.6 Hz, 2H), 7.76 (t, J 7.7 Hz, 2H), 7.98–8.05 (m, 2H), 8.10 (dd, J 1.1 and 7.2 Hz, 1H), 8.88 (dd, J 1.2 and 7.4 Hz, 1H); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS): 13.87, 41.12, 125.73, 126.28, 126.35, 126.57, 131.01, 132.44, 133.06, 136.13, 138.93, 141.34; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 210.8, 833.0. Anal. Calc. for 1
(LO) (C12H12OSe2): C, 43.66; H, 3.66%. Found: C, 43.61; H, 3.60%.
(OO)). 1
(LL) (0.58 g, 0.30 mmol) was dissolved in 20 mL of CH2Cl2 and the solution was bubbling with the ozone for 15 min. TLC was checked for the completion of the reaction (rf = 0.00 (chloroform)). Then the solution was evaporated and dried in vacuo. The crude product was purified by column chromatography (flash column, Al2O3, CH2Cl2). 1
(OO) gave 59% yield as colorless powder, mp 154.8–155.2 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.71 (s, 6H), 7.84 (t, J 7.7 Hz, 2H), 8.18 (dd, J 1.2 and 6.9 Hz, 2H), 8.71 (dd, J 1.4 and 6.9 Hz, 2H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 821.3. Anal. Calc. for 1
(OO) (C12H12O2Se2): C, 41.64; H, 3.49%. Found: C, 41.55; H, 3.45%. Anal. Calc. for 1
(OO)·2.5H2O (C24H24O4Se4·5H2O): C, 36.84; H, 4.38%. Found: C, 36.87; H, 4.41%.
(LL)). Following the similar method to that used for 1
(LL), 2
(LL) gave 80% yield as colorless powder, mp 52.3–52.8 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 1.35 (t, J 7.4 Hz, 6H), 2.89 (q, J 7.5 Hz, 4H), 7.32 (t, J 7.6 Hz, 2H), 7.70 (dd, J 1.2 and 8.1 Hz, 2H), 7.76 (dd, J 1.1 and 7.2 Hz, 2H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 341.7. Anal. Calc. for 2
(LL) (C14H16Se2): C, 49.14; H, 4.71%. Found: C, 49.23; H, 4.72%.
(LO)). Following the similar method to that used for 1
(LO), 3a
(LO) gave 80% yield as colorless needles, mp 129.8–130.2 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.72 (s, 3H), 6.98–7.02 (m, 2H), 7.11–7.16 (m, 3H), 7.56 (t, J 7.6 Hz, 1H), 7.76 (t, J 7.7 Hz, 1H), 8.05 (dd, J 1.2 and 8.0 Hz, 1H), 8.10 (dd, J 1.3 and 8.1 Hz, 1H), 8.15 (dd, J 1.3 and 7.2 Hz, 1H), 8.82 (dd, J 1.3 and 7.3 Hz, 1H); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS) 40.56, 123.19, 126.51, 126.57, 126.75, 126.88, 128.42 (2J(Se,C) 5.9 Hz), 129.63, 131.95, 132.42, 133.03, 133.50, 136.29, 140.89, 141.37; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 398.2, 831.4. Anal. Calc. for 3a
(LO) (C17H14OSe2): C, 52.06; H, 3.60%. Found: C, 52.11; H, 3.66%.
(OO)). Following the similar method to that used for 1
(OO), 3a
(OO) gave 63% yield as colorless needles, mp 148.0–148.8 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.74 (s, 3H), 7.33–7.50 (m, 3H), 7.51–7.58 (m, 2H), 7.78 (t, J 7.7 Hz, 1H), 7.81 (t, J 7.7 Hz, 1H), 8.13 (dd, J 1.1 and 8.1 Hz, 1H), 8.14 (dd, J 1.1 and 8.1 Hz, 1H), 8.63 (dd, J 1.4 and 7.4 Hz, 1H), 8.72 (dd, J 1.3 and 7.3 Hz, 1H); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS): 38.25, 126.72, 126.80, 126.85, 127.01, 127.64, 127.92, 130.02, 131.70, 133.33, 133.71, 135.55, 138.88, 139.22, 141.66; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 820.0, 832.5. Anal. Calc. for 3a
(OO) (C17H14O2Se2): C, 50.02; H, 3.46%. Found: C, 50.07; H, 3.57%.
(LO)). Following the similar method to that used for 1
(LO), 3b
(LO) gave 88% yield as colorless needles, mp 129.6–130.4 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.70 (s, 3H), 3.82 (s, 3H), 6.70 (d, J 8.8 Hz, 2H), 7.01 (d, J 8.8 Hz, 2H), 7.51 (t, J 7.2 Hz, 1H), 7.74 (t, J 7.2 Hz, 1H), 7.88 (dd, J 1.1 and 6.8 Hz, 1H), 8.01 (dd, J 1.1 and 6.8 Hz, 1H), 8.03 (dd, J 1.1 and 6.8 Hz, 1H), 8.10 (dd, J 1.1 and 6.8 Hz, 1H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 385.9, 833.9. Anal. Calc. for 3b
(LO) (C18H16O2Se2): C, 51.20; H, 3.82%. Found: C, 50.98; H, 3.83%.
(OO)). Following the similar method to that used for 1
(OO), 3b
(OO) gave 43% yield as colorless powder, mp 144.5–145.0 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.75 (s, 3H), 3.76 (s, 3H), 6.87 (d, J 8.9 Hz, 2H), 7.45 (d, J 8.9 Hz, 2H), 7.83 (t, J 7.7 Hz, 2H), 8.15 (dd, J 1.0, 8.2 Hz, 1H), 8.17 (dd, J 1.0, 8.2 Hz, 1H), 8.69 (dd, J 1.3, 9.1 Hz, 1H), 8.71 (dd, J 1.2, 9.1 Hz, 1H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 821.6, 846.4. Anal. Calc. for 3b
(OO) (C18H16O3Se2): C, 49.33; H, 3.68%. Found: C, 49.30; H, 3.73%.
(LO)). Following the similar method to that used for 1
(LO), 3d
(LO) gave 61% yield as colorless powder, mp 141.5–142.0 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.67 (s, 3H), 7.07 (dt, J 2.1 and 9.0 Hz, 2H), 7.64 (t, J 7.5 Hz, 1H), 7.83 (t, J 7.5 Hz, 1H), 7.99 (dt, J 2.4 and 9.0 Hz, 2H), 8.11 (dd, J 1.2 and 6.9 Hz, 2H), 8.18 (dd, J 1.2 and 4.2 Hz, 1H), 8.21 (dd, J 1.5 and 4.8 Hz, 1H), 8.84 (dd, J 1.2 and 6.0 Hz, 1H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 426.4, 835.6. Anal. Calc. for 3d
(LO) (C17H13NO3Se2): C, 46.70; H, 3.00; N, 3.20%. Found: C, 46.75; H, 3.03; N, 3.22%.
(OO)). Following the similar method to that used for 1
(OO), 3d
(OO) gave 82% yield as colorless powder, mp 151.2–152.0 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.83 (s, 3H), 7.72–7.92 (m, 4H), 8.12–8.27 (m, 4H), 8.57 (dd, J 1.1 and 6.2 Hz, 1H), 8.74 (dd, J 1.3 and 6.1 Hz, 1H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 821.4, 849.0. Anal. Calc. for 3d
(OO) (C17H13NO4Se2): C, 45.05; H, 2.89; N, 3.09%. Found: C, 45.12; H, 2.83; N, 3.12%.
(LL)). Under an argon atmosphere, 1,8-diiodonaphthalene (4.33 g, 11.40 mmol) was dissolved in 100 mL of dry THF and the solution was added to nBuLi (15.0 mL, 23.94 mmol, 1.6 N) at −78 °C. After 20 min, a THF solution of phenylselenobromide (22.80 mmol) was added to the above solution at −78 °C. Then the reaction mixture was stirring for 2 h and warmed up room temperature. Then, 20 mL of 5% acetone hydrochloric acid and 100 mL of benzene were added. The organic layer was separated, washed with brine, 10% aqueous solution of sodium hydroxide, saturated aqueous solution of sodium bicarbonate and brine. Then the solution was dried over sodium sulfate, evaporated and dried in vacuo. The crude product was purified by column chromatography (flash column, SiO2, hexane). 4a
(LL) gave 89% yield as yellow prisms, mp 64.0–64.8 °C; 1H NMR (300 MHz, CDCl3, δ, ppm, TMS): 7.22–7.28 (m, 8H), 7.39–7.45 (m, 4H), 7.64 (dd, J 1.1 and 7.3 Hz, 2H), 7.74 (dd, J 1.1 and 8.3 Hz, 2H); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS): 126.0, 127.4, 129.2, 129.4, 131.4, 133.4, 135.18, 135.19, 135.5, 135.9; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 435.4. Anal. Calc. for 4a
(LL) (C22H16Se2): C, 60.29; H, 3.68%. Found: C, 60.21; H, 3.75%.
(LO)). Following the similar method to that used for 1
(LO), 4a
(LO) gave 65% yield as colorless prisms, mp 155.5–156.3 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 6.90–6.95 (m, 4H), 7.10–7.13 (m, 6H), 7.22–7.26 (m, 6H), 7.48–7.53 (m, 4H), 7.52 (t, J 8.2 Hz, 1H), 7.83 (d, J 7.7 Hz, 1H), 8.07 (dd, J 1.3 and 7.2 Hz, 1H), 8.08 (dd, J 1.3 and 8.2 Hz, 1H), 9.02 (dd, J 1.3 and 7.3 Hz, 1H); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS): 123.90, 126.45, 126.51, 126.79, 127.86, 127.91, 128.70, 129.17, 129.49, 130.11, 131.73, 132.76, 133.27, 133.78, 136.31, 140.17, 140.71, 146.21; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 400.1, 863.7. Anal. Calc. for 4a
(LO) (C22H16OSe2): C, 58.17; H, 3.55%. Found: C, 58.11; H, 3.65%.
(OO)). Following the similar method to that used for 1
(OO), 4a
(OO) gave 78% yield as colorless prisms, mp. 187.5–188.3 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 7.21–7.30 (m, 8H), 7.37 (tt, J 1.5 and 6.8 Hz, 2H), 7.76 (t, J 7.7 Hz, 2H), 8.15 (dd, J 0.9 and 7.5 Hz, 2H), 8.47 (dd, J 1.1 and 6.2 Hz, 2H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 877.1. Anal. Calc. for 4a
(OO) (C22H16O2Se2): C, 56.19; H, 3.43%. Found: C, 56.22; H, 3.53%.
(LL)). Following the similar method to that used for 4a
(LL), 4c
(LL) gave 87% yield as yellow prisms, mp 97.8–98.3 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 1.30 (s 18H), 7.24 (t, J 7.7 Hz, 2H), 7.27 (d, J 8.6 Hz, 4H), 7.38 (d, J 8.6 Hz, 4H), 7.65 (dd, J 1.3 and 6.1 Hz, 2H), 7.73 (dd, J 1.3 and 7.0 Hz, 2H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 424.6. Anal. Calc. for 4c
(LL) (C30H32Se2): C, 65.45; H, 5.86%. Found: C, 65.41; H, 5.88%.
(LO)). Following the similar method to that used for 1
(LO), 4c
(LO) gave 86% yield as colorless powder, mp 179.5–180.2 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 1.22 (s, 9H), 1.27 (s 9H), 6.91 (d, J 8.3 Hz, 2H), 7.15 (d, J 8.1 Hz, 2H), 7.28 (d, J 8.8 Hz, 2H), 7.43 (d, J 8.6 Hz, 2H), 7.51 (t, J 7.9 Hz, 1H), 7.82 (t, J 7.7 Hz, 1H), 8.07 (d, J 8.3 Hz, 3H), 9.01 (dd, J 1.3 and 7.5 Hz, 1H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 393.2, 861.2. Anal. Calc. for 4c
(LO) (C30H32OSe2): C, 63.61; H, 5.69%. Found: C, 63.55; H, 5.58%.
(OO)). Following the similar method to that used for 1
(OO), 4c
(OO) gave 87% yield as colorless powder, mp 172.5–173.2 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 1.63 (s, 18H), 7.39 (d, J 8.6 Hz, 4H), 7.47 (d, J 8.3 Hz, 4H), 7.83 (d, J 7.6 Hz, 2H), 8.16 (dd, J 0.8 and 7.3 Hz, 2H), 8.73 (dd, J 1.0 and 6.2 Hz, 2H); 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 843.7. Anal. Calc. for 4c
(OO) (C30H32O2Se2): C, 61.86; H, 5.54%. Found: C, 61.93; H, 5.58%.
(LL), 5 (L) gave 99% yield as pale yellow oil; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.37 (s, 2JSe,H 11.7 Hz, 3H), 7.35 (dd, J 7.3 and 8.1 Hz, 1H), 7.47 (ddd, J 1.6, 6.9 and 8.2 Hz, 1H), 7.53 (ddd, J 1.6, 6.9 and 8.3 Hz, 1H), 7.66 (dd, J 1.1 and 7.3 Hz, 1H), 7.71 (d, J 8.2 Hz, 1H), 7.80 (dd, J 1.7 and 7.9 Hz, 1H), 8.24 (ddd, J 0.7, 1.6 and 8.1 Hz, 1H); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS): 36.54, 122.08 (J 14.9 Hz), 124.03 (J 6.2 Hz), 126.11, 126.79, 127.56, 129.35, 130.27, 131.40, 133.88, 138.68; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 158.6. Anal. Calc. for 5 (L) (C11H10Se): C, 59.74; H, 4.56%. Found: C, 59.90; H, 4.49%.
(O)). Following the similar method to that used for 1
(LO), 5
(O) gave 67% yield as colorless needles, mp 97.2–97.8 °C; 1H NMR (400 MHz, CDCl3, δ, ppm, TMS): 2.71 (s, 2JSe,H 12.3 Hz, 3H), 7.56–7.65 (m, 2H), 7.70 (dd, J 7.4 and 8.2 Hz, 1H), 7.81–7.87 (m, 1H), 7.95–8.02 (m, 2H), 8.29 (dd, J 1.1 and 7.3 Hz, 1H); 13C NMR (75 MHz, CDCl3, δ, ppm, TMS): 7.52, 125.83, 126.14, 126.39, 126.63, 127.16, 128.58, 128.67, 131.10, 133.29, 133.77; 77Se NMR (76 MHz, CDCl3, δ, ppm, Me2Se): 809.3. Anal. Calc. for 5
(O) (C11H10OSe): C, 55.71; H, 4.25%. Found: C, 55.88; H, 4.18%.
(LO) and 1
(OO) were grown by slow evaporation of methylene dichloride-hexane solutions at room temperature. A crystal of 1
(LO) was measured on a Rigaku AFC5R diffractometer with graphite monochromated Mo-Kα radiation source (λ = 0.71069 Å) and a rotating anode generator at 298(2) K. That of 1
(OO) was measured on a Rigaku/MSC Mercury CCD diffractometer equipped with a graphite-monochromated Mo-Kα radiation source (λ = 0.71070 Å) at 103(2) K. The structures of 1
(LO) and 1
(OO) were solved by direct method (SHELXS-97)41 and refined by full-matrix least-square method on F2 for all reflections (SHELXL-97).42 All the non-hydrogen atoms were refined anisotropically.
(LO) and 1
(OO), as the models of n
(LO) and n
(OO) (n = 1, 3 and 4), respectively, employing the 6-311+G(d) basis sets of the Gaussian 98 program.27 Calculations are performed at the density functional theory (DFT) level of the Becke three parameter hybrid functionals combined with the Lee-Yang-Parr correlation functional (B3LYP).28,29 QC calculations are also performed on 8-G-1-[MeSe(X)]C10H6 [G = MeSe (1), H (5), F (6), Cl (7) and Br (8) with X = lone pair (L), O (O), OH+ (OH+) and O2H2 (OH·OH)], employing the B3LYP/6-311+G(d) method. The NBO19,20 analysis were performed with the B3LYP/6-311+G(d) method. The AIM21,22 analysis are performed on 1
(LO) and 1
(OO) with the Gaussian 03 program employing the 6-311+G(3df) basis sets for Se with the 6-311+G(3d,2p) basis sets for C and H at the B3LYP level. They are analyzed employing the AIM 2000 program.21,22 NBO analysis are also performed on 1
(LO) and 1
(OO) with the same method for the AIM analysis. Optimized structures and the molecular orbitals are drawn using MolStudio R3.2 (Rev 1.0).43
(LO) and 3a
(OO) are also determined by the X-ray crystallographic analysis. The results are essentially the same as those of 1
(LO) and 1
(OO), respectively, which will be reported elsewhere.
(OO) are omitted for clarity.
(LL)).
(OH·OH) is discussed which is predicted to be most stable
among the three44.
(L) + H2O2 (E(n
(L) + H2O2)) relative to E(n
(O) + H2O) [ΔE(n
(LO)) = E(n
(L) + H2O2) −E(n
(O) + H2O)], although E(n
(L)) are not given in Table 3.45ΔE(n (LO)) = E(n (L) + H2O2) −E(n (O) + H2O) G = H (121.8 kJ mol−1) < F (131.3) < cis-MeSe (133.9) < Cl (136.8) ≤ Br (137.6) < trans-MeSe (141.0) | (R1) |
(LO) is predicted to be shorter than that of 1
(OO) by ca. 0.03 Å, while the observed values are almost equal (see Table 5). The crystal packing effect might contribute to the results.
(OH·OH). The type C is the global minimum, which is slightly stable than type B and much stable than type A, although the steric repulsion between OH and G seems largest.Footnote |
† Electronic supplementary information (ESI) available: Energies and relative energies for 8-G-1-[MeSe(X)]C10H6 [G = MeSe (1), H (5), F (6), Cl (7) and Br (8) with X = lone pair (L), O (O), OH+ (OH+) and O2H2 (OH·OH)], the packing structures of 1 (OO), counter map for 1 (OO), Cartesian coordinates for optimized structures of 1 and 5–8 with X = lone pair (L), O (O), OH+ (OH+) and O2H2 (OH·OH)]. CCDC reference numbers 688690 (1 (LO)) and 688691 (1 (OO)). For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/b809763a |
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