Alexandra B.
Fuchs
*a,
Aldo
Romani
b,
Delphine
Freida
a,
Gianni
Medoro
c,
Mélanie
Abonnenc
c,
Luigi
Altomare
b,
Isabelle
Chartier
d,
Dorra
Guergour
e,
Christian
Villiers
e,
Patrice N.
Marche
e,
Marco
Tartagni
b,
Roberto
Guerrieri
b,
Francois
Chatelain
a and
Nicolo
Manaresi
c
aBioChip Lab/Laboratoire Biopuces – CEA, 17 rue des Martyrs, 38054, Grenoble cedex 9, France. E-mail: alexandra.fuchs@cea.fr; Fax: 33 438 78 59 17; Tel: 33 438 78 91 87
bARCES, University of Bologna, Italy
cSilicon Biosystems, Bologna, Italy
dLETI – CEA-Grenoble, France
eINSERM U548, Laboratoire d'Immunochimie, CEA-Grenoble, France
First published on 15th November 2005
Sorting and recovering specific live cells from samples containing less than a few thousand cells have become major hurdles in rare cell exploration such as stem cell research, cell therapy and cell based diagnostics. We describe here a new technology based on a microelectronic chip integrating an array of over 100,000 independent electrodes and sensors which allow individual and parallel single cell manipulation of up to 10,000 cells while maintaining viability and proliferation capabilities. Manipulation is carried out using dynamic dielectrophoretic traps controlled by an electronic interface. We also demonstrate the capabilities of the chip by sorting and recovering individual live fluorescent cells from an unlabeled population.
We present here a device in which trapping, manipulation and motion of a variety of cell types are electronically controlled by dynamic dielectrophoretic traps generated by a microelectronic CMOS silicon chip. The experimental results demonstrate the performance of the system in isolation and recovery of individual fluorescent K562 cells from a bulk of unlabeled cells while maintaining viability, DNA integrity and cell proliferation capacity.
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Fig. 1 Illustration of the DEParray prototype with a close-up photograph in A and a cross section sketch in B. The device consists of an 8 × 8 mm2 core CMOS silicon chip and a polycarbonate lid with a conductive ITO layer. These elements are bonded together by a 100 µm thick double sided adhesive tape which also defines the walls of two chambers connected by a channel. Inlets/outlets to each chamber were drilled beforehand in the polycarbonate lid (numbered in white in panel A). Inlets 1, 3 and outlets 2, 4 give access to the loading and recovery chambers. Cells are loaded into the device using standard micropipette tips shown in B. The device is wirebonded to a printed circuit board (PCB) and the ITO is connected to the PCB with a drop of conductive glue deposited during the packaging process. |
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Fig. 2 Cell organization in a DEP trap array. Panel A illustrates a standard grid pattern of cages over a 23 × 19 subset of the electrode array. One cage is generated every 4 electrodes by applying a sinusoidal waveform to the lid and to every fourth electrode (in black) and a counterphase waveform to all their surrounding electrodes (in dark grey). Panel B shows a photograph taken through a standard microscope of an area of the device a few seconds after loading K562 cells at 8 × 105 cells ml−1. Cell sorting: Panels B, C and D shows a sequence of photographs taken from a film captured through the microscope where 5 cells (arrowed) are moved independently and simultaneously from their initial coordinates in the grid to the recovery chamber. Panel E shows the computed pathways for each cage: optimum cage pathways are automatically calculated to move around the static cages of the pattern (represented by small dots) and obstacles (walls, outlets and inlets represented with a checkered motif) detected by the optical and sensor arrays. Numbers identify each cage and its pathway. Black lettered rectangles in panel E correspond to the microscope fields presented in panels B (start), panel C (after approximately 30 motion steps) and panel D (end). The full video is available as ESI.† |
A variety of cell types such as laboratory cell lines as well as primary cells was tested in the device. Cells were loaded into the larger chamber of the chip while the electrode array was configured with a regular grid pattern depicted in Fig. 2A. We have found that activating the grid pattern before loading the sample limits cell adhesion and aggregation on the chip surface. All cell types got trapped in less than 30 seconds in the grid, illustrating that DEP forces have an effect on cells 40–50 µm away from the cage itself. Standard laboratory cell lines such as K562 (Fig. 2, panel B) and Jurkat (not shown) were recovered and tested for proliferative capacity: after being submitted to DEP fields for 30 min, cells were put back into culture and counted over 6 days versus a control culture. Proliferation was consistently comparable to the control culture for both cell lines (Fig. 3A). Our simple washing procedure with water and mild detergent followed by an ethanol rinse was sufficient to guarantee sterile culture conditions as we observed no microbial contamination in any of our multiple postDEP culture experiments. Adherent cell lines, such as HeLa cells, could also be manipulated after trypsinization, as well as primary cells, such as red (RBC) or white (WBC) blood cells freshly prepared from donor blood (not shown).. The viability of all nucleated cells was tested systematically after each DEP manipulation, for all cell lines as well as in all buffer conditions. Cell viability was consistently comparable to the control cell suspension. For example, representative counts on WBCs shows 84–92% viability after 30 min of DEP manipulation, comparable to the viability of the same cells measured before the experiment. We analyzed possible DNA damage using a modified Comet assay.18 The standard Comet assay tests for DNA fragmentation due to cell apoptosis. By adding a DNA repair enzyme (Fpg: formamidopyrimidine–DNA glycosylase), the modified Comet test detects slighter damage such as DNA oxidation. In these assays, we found no increase in damage on the cells' DNA: all comets were classified as class I (very small damage) using the method described in ref. 19 and no change of class was seen between control cells and those having undergone DEP. Results were analyzed further by determining mean tail intensities from two independent samples having undergone 30 min of DEP versus a control (Fig. 3B). The data confirms no significant increase in damage on cells having undergone DEP. All these results are coherent with previous data from studies exploring the effect of DEP on cells.4
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Fig. 3 Study of DEP effects on cells. Panel A shows results from a representative proliferation experiment carried out on K562 cells which were manipulated under DEP fields for 30 min before recovery and culture in a microplate format. Between 80–100 cells were seeded in each well and proliferation was followed by counting cells every 24 h. On the third day of culture, cells were diluted 3 fold in fresh medium and put back into culture. Line curves correspond to cells which underwent DEP manipulation (▲) compared to those which remained in culture medium for 30 min (◊) and to cells that were suspended in low conductance buffer without being submitted to DEP (□). Panel B shows results from a Comet assay carried out on adhesive HeLa cells. After electrophoretic migration, the tail intensities were measured for 50 cells and mean and standard error of mean were calculated. Black bars correspond to the test including the Fpg enzyme for the detection of oxidative damage and grey bars correspond to the test without Fpg for the detection of DNA breaks and alkali sensitization. Error bars represent standard error of mean. Two samples of HeLa cells were submitted independently to DEP (test 1 and 2) and are presented versus a control of cells which were directly taken from the cell culture. |
Depending on cell concentration and cell size, the average number of cells per cage could be modulated from 0 to more than 10. At 5 × 106 cells ml−1, an average of 5–6 RBCs cluster into each cage (not shown). The optimal cell concentration to obtain a homogeneous distribution of a single cell per cage was found to be 8 × 105 cells ml−1 (Fig 2 panel B) and this concentration was used in the following experiments to manipulate, sort and recover individual cells from a cell suspension. Taking into account a 2.9 µl chamber volume, this translates into a cell load of ∼2,320 cells for approximately 4,500 cages generated by the 4 × 4 grid pattern illustrated in Fig. 2A. This concentration corresponds to about 0.5 cell per cage, which is consistent with a statistical prevalent distribution of a single cell per cage.
Before filling the chip, a regular pattern of cages is activated every 4 electrodes as illustrated in Fig. 2A. The cell sample is then loaded into the larger chamber as described in Methods. While cells organize into the pattern, capacitive and optical readouts return a grey scale image of the wall/port layout (not shown), which defines the restricted spaces on the chip.
In the experiment described in Fig. 2, a heterogeneous cell sample was prepared by mixing K562 cells stained with CFSE (carboxy-fluorescein diacetate, succinimidyl ester) with unlabeled cells in a 1 ∶ 4 proportion. This cell suspension was loaded into the larger chamber (Fig 2B). Illumination was switched to fluorescence and positive labeled cells in the observation field were pinpointed and their coordinates were determined using a motorized stage as described in Methods. These coordinates, as well as final coordinates in the recovery chamber were entered into the control software which generates automatically the optimized pathways (Fig. 2E). In this experiment, 5 fluorescent cells were chosen. Fig. 2C shows a photograph taken during the sorting experiment after approximately 30 motion steps. Cells 2, 3 and 5 have clustered together into a single cage as their respective pathways have joined together after an identical number of motion steps (Fig. 2C). These cells move then as a triplet to the recovery chamber where their respective pathways diverge again. Thus, the cell cluster partially dissociates into separate cages: cell 2 moves to its final coordinates, whereas cell 3 stays with cell 5 and the final position of cage 3 is empty (Fig. 2D).
After all sorting experiments, once all labeled cells had been moved to the recovery chamber, its content was pipetted and placed in the bottom of a microwell plate. Fluorescently labeled cells were counted through a standard fluorescence microscope. The recovery rate of these selected cells is typically between 50% and 80% after having targeted and moved 2 to 10 cells to the recovery chamber.
The system shows great flexibility in the type of cell it can manipulate, from cell sizes between 5 to 20 µm, to adherent or non-adherent cultured cell lines, as well as primary cells isolated from fresh clinical samples. Other dielectric particles may be manipulated, in particular polystyrene beads in the same size range. Larger particles may also be manipulated by clustering electrodes together. For example, a larger cage can be generated by applying a counterphase sinusoidal voltage to a 2 × 2 electrode pad and an in-phase voltage to the 12 surrounding electrodes. This cage can efficiently trap and move particles of 50 µm (data not shown). Today, our current device and operating system is restricted to a cell load of a little over 2,000 cells in a 4 × 4 grid. In a number of applications, this amount of cells is obtained after enrichment steps such as immunodepletion or density centrifugation and our technology offers a high performance solution to automatic isolation of single cells of interest in that small population. In fact, even 25,000 cells can be manipulated on the current chip by modifying the routing procedure and opening paths in a denser 2 × 2 array to channel cells to the recovery chamber. An even higher cell load can be obtained by shrinking electrode size or increasing chip surface. For example, an electrode feature size of 10 µm sufficient for a great number of eukaryotic cells over a surface of 1 cm2 brings the number of active cages to 250,000 in a 2 × 2 grid, the equivalent of 100 current chips with no manufacturing difficulty. Automatic recognition of cells of interest from fluorescence images needs then to be implemented in a similar configuration to that seen on automatic microscope platforms with commercially available cell recognition software. In contrast to standard microscope images, the initial organization of all cells in the device into a regular predetermined matrix will greatly facilitate the subsequent automated recognition of labelled cells.
Our technology offers several advantages over other emerging technologies based on either dielectrophoresis, electroosmosis or optical tweezers.6–10,12,13 Foremost, our device shows great flexibility and any zone of the chip can be programmed to become a virtual analysis window or a channel. Operation requires electronic control alone through a standard PC computer. Furthermore, as motion and sorting is carried out in a stationary liquid environment, there is no need of fluid flow control, or of hydrodynamic focusing, no need of fluidic particle transport or of fluidic switching in order to efficiently sort individual particles from a sample. Moreover, our multiplexed array allows parallel and independent manipulation of hundreds of cells at a time as compared to other systems where parallelization is obtained either by multiplying the number of channels, or by small arrays of immobile traps (for example of vertical cavity surface emitting lasers (VCSELs)21). The motion at an average speed of 1 mm min−1 may appear relatively slow in regard to speeds obtained with particle fluid transport but the capacity of simultaneously moving all cells of interest at that same speed wraps up a typical sorting experiment on a 6 × 6 mm2 chip in 15 minutes. There are no microstructures or moving microactuators that can get clogged and this is a major advantage when working with a complex medium such as biological fluids. Even if a cell aggregate does form and occupies an area on the chip, software programming makes it immediately possible to move around the aggregate and continue the experiment. From a detection point of view, the conductive lid is completely transparent to the standard fluorescent labels and any analyses routinely carried out in a slide and coverslip format can be done through the ITO lid.
The use of silicon microfabrication techniques not only offers low cost mass production but also allows the implementation of other functions on the chip. Today, our sensing arrays need to be upgraded to gain sensitivity and reliably detect a single cell. The whole manipulation will then be carried out automatically as numerical feedback on these sensor arrays will allow the control system to identify the cells of interest (for example through embedded optical detection instead of through an external fluorescence microscope). The control system would then program the appropriate cages to trap these cells and then proceed to move them simultaneously to the recovery chamber by avoiding other particles on the way, the latter being detected by capacitive sensing.
Other protocols may also be implemented on the chip. We are developing applications and protocols in which the user may choose to bring a specific cell into contact with other cells to study single cell–cell interactions, and/or then might choose to fuse this cell with a liposome carrying drugs or DNA (and also trapped in a DEP cage). He may then choose to move the cell to a new analysis chamber for a closer phenotypic study and finally may want to recover the cell for further analysis (such as single cell PCR or clonal amplification). Any of these protocols may be configured by software programming alone with no modification of the chip and hardware design.
Footnote |
† Electronic supplementary information (ESI) available: Video captured through a microscope where 5 cells are moved independently and simultaneously from their initial coordinates in a grid to a recovery chamber (see Fig. 2 for details). See DOI: 10.1039/b505884h |
This journal is © The Royal Society of Chemistry 2006 |