Ryo
Horikoshi
,
Chisato
Nambu
and
Tomoyuki
Mochida
*
Department of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, 274-8510, Japan. E-mail: mochida@chem.sci.toho-u.ac.jp
First published on 22nd October 2003
Co-crystallization of 5-ferrocenylpyrimidine (FcPM) with various carboxylic acids and aromatic alcohols produces hydrogen-bonded supramolecular architectures. Thus, reaction of FcPM with compounds containing two hydrogen-bonding sites gives 2:1 co-crystals with discrete structures of the type [(FcPM)2·D] [where D
=
succinic acid (1), hydroquinone (2), resorcinol (3) and 2,2′-thiodiglycolic acid (4)]. A complex with a chiral chain structure, [FcPM·{(R)-(+)-1,1′-bi-2-naphthol}]n (5), is obtained by the combination of FcPM with (R)-(+)-1,1′-bi-2-naphthol. The binaphthol molecules form hydrogen-bonded helical chains, which carry ferrocene units as pendants. The combination of FcPM with trimesic acid and pyromellitic acid produces supramolecular complexes with tape structures, [FcPM·(trimesic acid)]n (6) and [FcPM2·(pyromellitic acid)]n (7), respectively. The tape structure of 6 consists of repeating units of large hexagonal rings while that of 7 consists of rhomboidal rings. Combination of FcPM with phloroglucinol produces a layered structure complex, [FcPM·(phloroglucinol)·2H2O]n (8), exhibiting three-dimensional hydrogen bonding. In this complex, FcPM molecules link hydrogen-bonded sheets composed of phloroglucinol and water molecules. The dimensionality of the assembled structures is influenced by the number of hydrogen-bonding substituents on the donor molecules.
Thus, to design hydrogen-bonded molecular assemblies containing ferrocenes, we combined FcPM and various organic hydrogen-bond donors, shown in Fig. 1, which are frequently employed as building blocks of hydrogen-bonded crystals.3,6 Hydrogen-bond donors, carrying two, three or four hydrogen-bonding substituents, have been selected to investigate hydrogen-bond topology and dimensionality. We used phenol derivatives such as hydroquinone, resorcinol, (R)-(+)-1,1′-bi-2-naphthol and phloroglucinol, and carboxylic acids: succinic acid, 2,2′-thiodiglycolic acid, trimesic acid and pyromellitic acid.
Metallocenes7 play important roles in the field of materials science, as components of catalysts,8 molecular magnets9 and non-linear optical materials.10 In particular, the redox activity of metallocenes leads to a variety of interesting electrical and photophysical phenomena.11 So far, several hydrogen-bonded supramolecules derived from metallocenes have been reported, in which the organometallic component works as a hydrogen-bond donor or as a hydrogen-bond acceptor.12 However, hydrogen-bonded complexes of mono-substituted ferrocenes have received less attention.13 In the present paper, we describe the structural variation in hydrogen-bonded co-crystals of 5-ferrocenylpyrimidine (FcPM), with the hydrogen-bond topology ranging from discrete to three-dimensional. Together with our previous study on the assembly of FcPM via coordination bonds, our studies demonstrate the crystal engineering possibilities of ferrocene-containing materials.
![]() | ||
Fig. 1 Building blocks used for the synthesis of the ferrocene-based hydrogen-bonded supramolecules 1–8: FcPM = 5-ferrocenylpyrimidine, (a) succinic acid, (b) hydroquinone, (c) resorcinol, (d) 2,2′-thiodiglycolic acid, (e)
(R)-(+)-1,1′-bi-2-naphthol, (f) trimesic acid, (g) pyromellitic acid and (h) phloroglucinol. | ||
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | |
|---|---|---|---|---|---|---|---|---|
a
I > 0.0σ(I)
b
R
1 = Σ||Fo| − |Fc||/Σ|Fo|; Rw = [Σw(Fo2 − Fc2)2/Σw(Fo2)2]1/2.
|
||||||||
| Formula | C32H30N4O4Fe2 | C34H30N4O2Fe2 | C34H30N4O2Fe2 | C32H30N4O4SFe2 | C34H26N2O4Fe | C23H18N2O6Fe | C34H30N4O8Fe2 | C20H22N2O5Fe |
| Formula weight | 646.31 | 638.33 | 638.33 | 678.37 | 550.44 | 474.25 | 782.37 | 426.25 |
| Crystal system | Monoclinic | Monoclinic | Monoclinic | Monoclinic | Monoclinic | Triclinic | Monoclinic | Orthorhombic |
| Space group | P21/n (No.14) | P21/n (No.14) | P21/n (No.14) | P21/c (No.14) | P21 (No.4) | Pī (No.2) | C2/c (No. 15) | P bcm (No.57) |
| a/Å | 9.755(4) | 10.801(5) | 10.766(3) | 7.406(3) | 9.320(4) | 11.037(2) | 12.474(4) | 7.997(3) |
| b/Å | 8.478(3) | 7.696(5) | 7.576(3) | 19.131(7) | 10.951(5) | 12.652(4) | 13.687(3) | 14.278(2) |
| c/Å | 17.791(3) | 17.052(4) | 17.452(4) | 20.727(3) | 13.149(4) | 7.518(5) | 19.390(3) | 17.219(2) |
| α/deg | 90 | 90 | 90 | 90 | 90 | 104.42(3) | 90 | 90 |
| β/deg | 95.72(2) | 95.10(3) | 94.59(2) | 92.42(3) | 99.32(3) | 96.41(3) | 94.10(2) | 90 |
| γ/deg | 90 | 90 | 90 | 90 | 90 | 88.21(2) | 90 | 90 |
| U/Å3 | 1464.1(8) | 1411(1) | 1418.9(6) | 2933(1) | 1324.3(9) | 1010.4(8) | 3302(1) | 1966.3(10) |
| Z | 2 | 2 | 2 | 4 | 2 | 2 | 4 | 4 |
| μ/cm−1 | 10.34 | 10.66 | 10.61 | 11.04 | 6.04 | 7.91 | 4.93 | 8.00 |
| T/K | 296 | 296 | 296 | 296 | 296 | 296 | 296 | 296 |
| Measured reflections | 3797 | 3653 | 3679 | 7461 | 3391 | 4892 | 3777 | 2703 |
| Observed reflections (I > 2.0σ(I)] | 2305 | 2729 | 2071 | 4327 | 3385a | 2935 | 3926 | 1437 |
| b R 1 | 0.060 | 0.050 | 0.049 | 0.041 | 0.042 | 0.042 | 0.052 | 0.057 |
| b R w | 0.180 | 0.148 | 0.143 | 0.129 | 0.137 | 0.112 | 0.164 | 0.171 |
| Complex | D–H⋯A | D⋯A/Å | Symmetry code |
|---|---|---|---|
| a Carboxylic acid oxygen. b Phenolic oxygen. c Disordered hydrogen. | |||
| 1 | O1a–H15⋯N1 | 2.681(5) |
x, −1 + y, z |
| 2 | O1b–H14⋯N1 | 2.805(4) |
x, −1 + y, z |
| 3 | O1b–H14⋯N1 | 2.793(8) | 1/2 − x, 1/2 + y, 1/2 − z |
| O2b–H26⋯N1 | 2.882(8) | 1/2 − x, 1/2 + y, 1/2 − z |
|
| 4 | O1a–H25⋯N1 | 2.697(5) |
x, 1/2 − y, 1/2 + z |
| O3a–H30⋯N3 | 2.695(5) | −1 + x, −1 + y, z |
|
| 5 | O1b–H13⋯O2 | 2.812(6) | −x, 1/2 + y, 1 − z |
| O2b–H20⋯N2 | 2.686(7) | 1 − x, −1/2 + y, 1 − z |
|
| 6 | O1a–H16⋯N1 | 2.673(3) | −1 − x, −1 − y, −1 − z |
| O3a–H17⋯N2 | 2.695(3) | −1 − x, −y, −z |
|
| O5a–H18⋯O6 | 2.678(3) | −2 − x, −1 − y, −z |
|
| 7 | O1a–H13⋯N1 | 2.778(3) | |
| O3a–H14⋯N2 | 2.737(4) | 3/2 − x, −1/2 − y, 2 − z |
|
| 8 | O1b–H10⋯N | 2.742(5) | −x, −1/2 + y, z |
| O2b–Hc⋯O3w | 2.715(4) | ||
| O3w–Hc⋯O1 | 2.787(4) | −1 + x, y, z |
|
| O3w–Hc⋯O3w | 2.667(8) | −x, −1 − y, −1 − z |
|
=
succinic acid (1), hydroquinone (2), resorcinol (3) and 2,2′-thiodiglycolic acid (4)]
=
succinic acid (1), hydroquinone (2), resorcinol (3) and 2,2′-thiodiglycolic acid (4)]. The structures of 1–4 have been determined crystallographically. In these complexes, two FcPM molecules are bridged by the donor molecule via the O–H⋯N hydrogen bonds, as shown in Fig. 2. Thus, one of the two nitrogen atoms of FcPM is involved in hydrogen bonding, while the other is free. The discrete units of 1 and 2 lie on inversion centres, while that of 4 has no inversion symmetry. The resorcinol molecule in 3 shows two-fold disorder around the centre of the benzene ring with a site occupancy of 1∶1; the discrete unit was observed to have an apparent inversion centre. In Fig. 2(c), only one disordered site of the resorcinol molecule is shown for simplicity. The crystal structures, packing modes and cell parameters of 1–3 are very similar and they are almost isomorphous with each other. It is highly interesting that such a similarity is observed, independent of the nature of the hydrogen-bonding species (i.e., carboxylic acids or phenols) or substituent position (i.e., meta or para isomers). The common feature in these complexes is that the intermolecular N(1)⋯N(1*) separations through the hydrogen bonds are about 10 Å, which may presumably result in similar packing structures. In the crystals of 1–4, the N⋯N distances are 10.62, 9.77, 9.76 and 9.86 Å, respectively, and the intramolecular O⋯O distances in the hydrogen-bond donors are 5.92, 5.52, 4.66 and 6.34 Å, respectively.
![]() | ||
| Fig. 2 Structures of the discrete units in (a) 1, (b) 2, (c) 3 and (d) 4. Dashed lines indicate hydrogen bonds. Hydrogen atoms bonded to carbon atoms are omitted for clarity. For complex 3, only one disordered site of the resorcinol molecule is shown for clarity. | ||
![]() | ||
| Fig. 3 Part of the chiral chain structure of 5. Dashed lines indicate hydrogen bonds. Hydrogen atoms bonded to carbon atoms are omitted for clarity. | ||
Among the hydrogen-bond donors we used, this was the only molecule that has chirality. The control of chirality in ferrocene-based materials is interesting from the viewpoint of nonlinear optical properties. As a related example, Lee and Chung13b have reported the synthesis and structure of hydrogen-bonded supramolecules composed of 1,1′-bis(ethenyl-4-pyridiyl)ferrocene and 1,1′-bi-2-naphthol. In their system, control of the assembled structures was achieved by changing the recrystallization solvent and the relationship between the hydrogen-bonded ferrocene assembled structures and SHG efficiencies has been demonstrated. In the present study, we tried to obtain different co-crystals by changing solvents and also tried to co-crystallize FcPM with racemic 1,1′-bi-2-naphthol, but both strategies were unsuccessful.
O), there seems to be no proton transfer occurring along the hydrogen bonds1f,15 within the carboxylic acid dimer.
![]() | ||
| Fig. 4 Part of the tape structure of 6. Dashed lines indicate hydrogen bonds. Hydrogen atoms bonded to carbon atoms are omitted for clarity. | ||
On the other hand, the combination of FcPM with pyromellitic acid produced a 2∶1 complex, [(FcPM)2·(pyromellitic acid)]n (7). This complex also exhibits a tape structure, which runs along the a axis. Fig. 5 shows the tape structure, which consists of a square ring repeating unit formed from two molecules of pyromellitic acid and two molecules of FcPM. In contrast to the planar hexagonal repeating unit in 6, the square unit in 7 is tilted, because neighbouring carboxyl groups of pyromellitic acid are perpendicular to each other. The inversion centre of 7 lies at the centre of pyromellitic acid.
![]() | ||
| Fig. 5 Part of the tape structure of 7. Dashed lines indicate hydrogen bonds. Hydrogen atoms bonded to carbon atoms are omitted for clarity. | ||
Fig. 6 shows a schematic illustration of the expanded structures of 6 and 7. The tape structures in both complexes are double-chain structures, which are composed of alternate linking of FcPM and hydrogen-bond donors. The trimesic acid in 6 is dimerized through self-complementary hydrogen bonding and works as a unit that contains four hydrogen bonding sites. Thus, from the viewpoint of hydrogen-bonding topology, trimersic acid in 6 plays the same role as pyromellitic acid in 7.
![]() | ||
| Fig. 6 Schematic illustrations of the tape structures in (a) 6 and (b) 7. | ||
Complex 8 has a layered structure, composed of two-dimensional phloroglucinol–water sheets that are linked by FcPM molecules via hydrogen bonds. Fig. 7(a) shows the structure of the hydrogen-bonded sheet, which extends within the ab plane. The hydroxyl groups of phloroglucinol form hydrogen bonds with water molecules. Two of the phenolic hydrogens are further hydrogen-bonded to FcPM molecules that are located outside the sheet. The hydrogen bond distances of O1…N and O1…O3w are 2.747(4) and 2.787(4) Å, respectively. Thus, FcPM molecules are located between the phloroglucinol–water sheets, as shown in Fig. 7 (c). Fig. 7 (d) shows the connection between FcPM and phloroglucinol molecules along the c axis. Several examples of hydrogen-bonded co-crystals of phloroglucinol have been reported so far16 and in particular, the structure of phloroglucinol·2H2O is interesting with reference to the present structure: it consists of two-dimensional sheets formed by phloroglucinol and water molecules,17 in which each phenol group is hydrogen-bonded to two water molecules. Therefore, complex 8 may be regarded as an insertion product of FcPM into phloroglucinol·2H2O, although the hydrogen-bonding topology of the sheets is not exactly the same.
![]() | ||
| Fig. 7 Crystal structure of 8. (a) Two-dimensional sheet composed of phloroglucinol and two H2O molecules and (b) a schematic illustration in which the shaded part indicates hydrogen-bonded chains (see text). (c) Packing diagram of 8 viewed along the a axis. (d) One-dimensional hydrogen-bonded chain of FcPM and phloroglucinol. Dashed lines indicate hydrogen bonds. Hydrogen atoms bonded to carbon atoms are omitted for clarity. | ||
Fig. 7(b) shows a schematic representation of the phloroglucinol–water sheet. It is interesting to note that the sheet involves one-dimensional hydrogen-bonded chains, which are formed by O2 atoms of phloroglucinol and water molecules, as shown in the shaded part of Fig. 7(b). X-Ray structure analysis revealed that phloroglucinol lies on a two-fold screw axis and the hydrogen positions in this one-dimensional chain are disordered. Thus, the chain is observed as the averaged structure of ⋯O2–H⋯O3w–H⋯O2–H⋯ and ⋯H–O2⋯H–O3w⋯H–O2⋯, which indicates that the hydrogen atoms are either statistically or dynamically disordered. Indeed, one-dimensional hydrogen-bonded systems are of interest from the viewpoint of proton dynamics involving the mechanism of solitonic excitation.18 Study of a possible dynamical behaviour in this solid is in progress in our laboratories by means of solid-state NMR and dielectric spectroscopy.
We also investigated the release of the water molecules from the crystals of 8. Thermogravimetric analysis revealed a gradual weight loss of ca. 8–9% of the original weight between 70–130
°C, which corresponds to the loss of the two H2O molecules (calcd 8.4%).
In our previous study on the assembly of ferrocene-based materials via coordination bonds, topologically interesting architectures, such as redox-active molecular chains, 2-D structures and metallocene clusters, were obtained.4 In the present work, we have demonstrated the hydrogen-bond directed organization of organometallic components, which leads to a variation of the dimensionality, ranging from discrete to three-dimensional. In particular, the correlation between the dimensionality and the kind of hydrogen-bond donors has been shown. One of the advantages of the bulk assembled materials is the ease of structural characterization by crystallography. Studies on the assembly of redox-active components will further build the foundations for the construction and analysis of functional 2-D surfaces organized by hydrogen bonds or coordination bonds.
×
10−4 mol) in 2 mL of methanol, a solution of succinic acid (12 mg, 1.0
×
10−4 mol) in 2 mL of methanol was added. After standing for a few days, orange crystals were formed in good yield (40–75%) as the sole product, which was characterized by X-ray diffraction, infrared spectra and elemental analysis. FT-IR v/cm−1: 3100–2200 br (OH) and 1697 s (CO). Anal. calcd for C32H30N4O4Fe2: C, 59.47; H, 4.68; N, 8.67; found C, 59.67; H, 4.73; N, 8.64%.
×
10−4 mol) in 2 mL of acetonitrile and hydroquinone (11 mg, 1.0
×
10−4 mol) in 2 mL of acetonitrile. Orange prismatic crystals. FT-IR v/cm−1: 3300–2400 br (OH). Anal. calcd for C34H30N4O2Fe2: C, 63.98; H, 4.74; N, 8.78; found: C, 63.87; H, 4.73; N, 8.77%.
×
10−4 mol) in 2 mL of acetonitrile and resorcinol (11 mg, 1.0
×
10−4 mol) in 2 mL of acetonitrile. Orange prismatic crystals. FT-IR v/cm−1: 3300–2400 br (OH). Anal. calcd for C34H30N4O2Fe2: C, 63.98; H, 4.74; N, 8.78; found: C, 63.00; H, 5.12; N, 7.19%.
×
10−4 mol) and 2,2′-thiodiglycolic acid (15 mg, 1.0
×
10−4 mol). Orange plate-like crystals. FT-IR v/cm−1: 3300–2400 br (OH) and 1706 s (CO). Anal. calcd for C32H30N4O4Fe2S: C, 56.66; H, 4.46; N, 8.26; found: C, 56.46; H, 4.53; N, 7.99%.
×
10−4 mol) and (R)-(+)-1,1’-bi-2-naphthol (29 mg, 1.0
×
10−4 mol). Orange prismatic crystals. FT-IR v/cm−1: 3600–2800 br (OH). Anal. calcd for C34H26N2O2Fe: C, 74.19; H, 4.76; N, 5.09; found: C, 73.94; H, 4.85; N, 4.93%.
×
10−4 mol) and trimesic acid (21 mg, 1.0
×
10−4 mol). Orange prismatic crystals. FT-IR v/cm−1: 3300–2500 br (OH) and 1698 s (CO). Anal. calcd for C23H18N2O6Fe: C, 58.25; H, 3.83; N, 5.91; found: C, 58.45; H, 3.87; N, 5.89%.
×
10−4 mol) and pyromellitic acid (25 mg, 1.0
×
10−4 mol). Orange prismatic crystals. FT-IR v/cm−1: 3100–2500 br (OH) and 1722 s (CO). Anal, calcd for C34H30N4O8Fe2: C, 58.34; H, 3.87; N, 7.16; found: C, 58.11; H, 3.94; N, 7.03%.
×
10−4 mol) in 2 mL of acetonitrile and phloroglucinol·2H2O (16 mg, 1.0
×
10−4 mol) in 2 mL of acetonitrile. Orange plate-like crystals. FT-IR v/cm−1: 3100–2500 br (OH). Anal. calcd for C20H22N2O5Fe: C, 56.36; H, 5.20; N, 6.57; found: C, 56.24; H, 5.17; N, 6.64%.
=
0.71073 Å) at 296 K. All calculations were performed using the teXsan crystallographic software package.21 These structures were solved by direct methods (SIR 9222) and expanded using Fourier techniques. Refinements were carried out on F2 and an absorption correction was applied (ϕ scan). The hydrogen atoms attached to carbon atoms were inserted at the calculated positions and allowed to ride on their respective parent atoms. The hydrogen atoms attached to oxygen atoms were located on the electron density maps and refined at fixed distances from the respective parent atoms, except for the water hydrogen atoms in compound 8, which could not be located. The absolute structure of 5 was determined based on the Flack parameter.†
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| † CCDC reference numbers 206161–206168. See http://www.rsc.org/suppdata/nj/b3/b306699a/ for crystallographic data in .cif or other electronic format. |
| This journal is © The Royal Society of Chemistry and the Centre National de la Recherche Scientifique 2004 |