Kazushi Kinbara, Yuka Kobayashi and Kazuhiko Saigo*
Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
First published on UnassignedUnassigned23rd December 1999
Enantiopure cis-1-aminoindan-2-ol was selected as a basic resolving agent for racemic 2-arylalkanoic acids on the basis that its rigid cis-conformation would favor the formation of a supramolecular hydrogen-bonded column, in which chiral discrimination of the racemic carboxylate would occur. It was found that this amino alcohol possesses high resolving efficiency for a variety of racemic acids; also, X-ray crystallographic analyses of the diastereomeric salts showed that a columnar hydrogen-bond network is formed in both the less- and more-soluble diastereomeric salts, as we had expected. A detailed study on the stabilising interactions suggested that there are two that play an important role: (i) hydrogen bonding between the ammonium and hydroxy groups and the acid carboxylate, which determines the formation of the columnar network and (ii) CH⋯
π, which influences the herringbone packing of the aromatic groups, implying that it also plays some role in chiral discrimination.
We have recently carried out the resolution of a series of racemic 2-arylalkanoic acids by enantiopure erythro-2-amino-1,2-diphenylethanol (1) (Fig. 1). We found that enantiopure 1 distinguished between the enantiomers of several kinds of 2-arylalkanoic acids.3 Where the resolution was efficient a supramolecular hydrogen-bonded column was formed. A network of strong hydrogen bonds between the carboxylate oxygens, the ammonium hydrogens of the protonated 1 cation (1·H+), the hydroxy group of 1·H+, and a water molecule, was commonly formed in the less-soluble diastereomeric salts (Fig. 2), while in the more-soluble diastereomeric salts another columnar network of hydrogen bonds between only the carboxylate oxygens and the ammonium hydrogens of 1·H+ was formed.
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Fig. 1 Structures of resolving agents. |
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Fig. 2 Schematic representation of the columnar hydrogen-bond networks formed in the less-soluble diastereomeric salts of enantiopure 1 with 2-arylalkanoic acids. The hydrogen atoms, and aryl and alkyl substituents are omitted for clarity. The dotted lines show the hydrogen bonds. |
No such stable structure was formed where resolution was poor. The different hydrogen-bond networks of the diastereomeric salts are thought to arise from the free rotation around the C1–C2 single bond and the steric repulsion between the two phenyl groups in 1, resulting in small differences in stability for less- and more-soluble diastereomeric salts in some cases.
On the basis of these results, we sought a resolving agent for racemic 2-arylalkanoic acids more suitable than 1; the fundamental principle for our selection is based on the hypothesis that the formation of a consistent columnar supramolecular hydrogen-bond network in the less-soluble diastereomeric salts is essential in order to distinguish the enantiomers of the racemic acids. First of all, in order to prevent the free rotation observed for 1·H+, we wanted a cyclic amino alcohol. Moreover, to mimic the gauche conformation of the ammonium and hydroxy groups of 1·H+ in crystals, which enables the formation of the hydrogen-bonded columns, a cyclic cis-amino alcohol was preferred. We finally chose enantiopure cis-1-aminoindan-2-ol (2) (Fig. 1) as it not only fulfilled the structural requirements, but is also readily available, and has been used in the resolution of some profen type drugs.4
In the present paper, we report the diastereomeric salt resolution of racemic 2-arylalkanoic acids by 2 and the chiral discrimination mechanism on the basis of the X-ray crystallographic analyses of the resultant diastereomeric salts.
As can be seen from Table 1, (1S,2R)-2 showed high resolving efficiencies for a variety of racemic 2-arylalkanoic acids having a substituent on the aromatic ring and/or at the α-position. It is noteworthy that (1S,2R)-2 showed high resolving efficiency even for p-substituted 2-arylalkanoic acids, which could not be efficiently resolved by enantiopure 13 (Table 1, entries 4, 5, 8).
Entry | Racemic acid | Solvent (ratio![]() | Yield (%)![]() | Ee (%) | Resolving efficiency![]() | Absolute configuration of major enantiomer |
---|---|---|---|---|---|---|
a The resolution was carried out on a 1–3 mmol scale. b The weight (g) of the solvent normalized to 1 mmol scale. c Yield of the crystallised diastereomeric salt based on a half amount of the racemic acid. d Enantiomeric excess (ee) of the liberated acid, as determined by HPLC analysis (Daicel Chiralcel OJ-R). e Ee of the liberated acid, as determined by HPLC analysis [Daicel Chiralcel OD (entries 3, 4, 6, 8, 10 and 12) and OB (entry 2)] after conversion into the methyl ester by diazomethane. f Ee of the liberated acid, as determined by a chiral GC (CHIRALDEX GT-A) after conversion into the methyl ester by diazomethane. g Defined as the product of the yield of the diastereomeric salt and the ee. | ||||||
1 | 3a | H2O–MeOH (0.2/0.7) | 65 | 95![]() | 0.62 | R |
2 | 3b | H2O–EtOH (0.5/0.1) | 85 | 24![]() | 0.21 | R |
3 | 3c | H2O–EtOH (0.2/0.8) | 59 | 91![]() | 0.54 | R |
4 | 3d | H2O–PriOH (0.2/2.3) | 32 | 61![]() | 0.20 | R |
5 | 3e | H2O–EtOH (0.2/0.4) | 79 | 88![]() | 0.70 | R |
6 | 3f | AcOEt (12.2) | 54 | 87![]() | 0.47 | R |
7 | 4a | H2O–EtOH (0.2/0.2) | 48 | 78![]() | 0.37 | R |
8 | 4b | H2O–EtOH (0.3/0.8) | 83 | 67![]() | 0.56 | R |
9 | 5 | H2O–EtOH (0.2/0.9) | 80 | 44![]() | 0.35 | S |
10 | 6 | H2O–EtOH (0.1/0.2) | 67 | 59![]() | 0.40 | S |
11 | 7 | AcOEt–EtOH (5.3/3.6) | 45 | 88![]() | 0.40 | S |
Here, it should be pointed out that the absolute configuration of the acid component in the less-soluble diastereomeric salts differed depending on the bulkiness of the alkyl group at the α-position of the 2-arylalkanoic acid; the (R)-form was predominantly obtained from 3a and 4a, the (S)-form from 5 and 6 (vide post).
Compound | (1S,2R)-2·(R)-3a (less soluble) | (1S,2R)-2·(R)-3c (less soluble) | (1S,2R)-2·(R)-3e·H2O (less soluble) | (1S,2R)-2·(R)-4a (less soluble) | (1S,2R)-2·(S)-4a (more soluble) | (1S,2R)-2·(S)-4b (less soluble) | (1S,2R)-2·(S)-6 (less soluble) | (1S,2R)-2·(S)-7 (less soluble) |
---|---|---|---|---|---|---|---|---|
a |Fo| > 0.1σ|Fo|. | ||||||||
Formula | C18H21NO3 | C19H23NO3 | C19H25NO5 | C19H23NO3 | C19H23NO3 | C20H25NO3 | C20H25NO3 | C19H20NO4F3 |
Formula weight | 299.0 | 313.0 | 347.4 | 313.0 | 313.0 | 327.4 | 327.4 | 383.4 |
Crystal system | Monoclinic | Monoclinic | Monoclinic | Monoclinic | Monoclinic | Monoclinic | Monoclinic | Monoclinic |
Space group | P![]() | P![]() | P![]() | P![]() | P![]() | C2 | C2 | P2i |
a/Å | 12.121(4) | 12.294(5) | 14.584(4) | 12.351(3) | 16.848(4) | 17.045(4) | 19.831(4) | 15.787(2) |
b/Å | 6.319(2) | 6.388(4) | 6.175(3) | 6.170(2) | 5.947(2) | 6.148(2) | 5.786(1) | 6.3359(8) |
c/Å | 10.882(4) | 11.134(5) | 10.852(3) | 11.431(2) | 8.580(2) | 17.931(2) | 16.453(2) | 9.353(1) |
α/° | 90 | 90 | 90 | 90 | 90 | 90 | 90 | 90 |
β/° | 102.69(3) | 103.71(3) | 107.80(2) | 99.10(2) | 101.75(2) | 101.22(2) | 110.57(1) | 99.428(8) |
γ/° | 90 | 90 | 90 | 90 | 90 | 90 | 90 | 90 |
V/Å3 | 813.1(5) | 849.5(7) | 930.6(6) | 860.2(8) | 841.7(4) | 1843.1(9) | 1767.7(5) | 922.9(2) |
Z | 2 | 2 | 2 | 2 | 2 | 4 | 4 | 2 |
μ/mm−1 | 0.668 | 0.661 | 0.735 | 0.653 | 0.667 | 0.629 | 0.656 | 0.998 |
Temperature/K | 293 | 293 | 293 | 293 | 293 | 293 | 293 | 293 |
No. reflections measured | 1454 | 1288 | 1647 | 1474 | 1466 | 1648 | 1598 | 1613 |
No. reflections observed (|Fo| > 3σ|Fo|) | 1403 | 1260![]() | 1563 | 1311 | 1387 | 1571 | 1540 | 1487 |
Rint | 0.022 | 0.014 | 0.014 | 0.041 | 0.063 | 0.015 | 0.021 | 0.015 |
R | 0.061 | 0.086 | 0.045 | 0.043 | 0.101 | 0.049 | 0.050 | 0.047 |
In all of the less- and more-soluble diastereomeric salts, a columnar supramolecular hydrogen-bond network is formed around the 21-axis, which is parallel to the b-axis. In addition, except for (1S,2R)-2·(R)-3e·H2O, no water molecules are incorporated in the crystals. These facts indicate that the cis-conformation of the ammonium and hydroxy groups of the protonated 2 cation (2·H+) causes the formation of a tight hydrogen-bonded column without hydrogen bonds with a water molecule, just as we had anticipated.
A common columnar hydrogen-bonded network is found in the less-soluble diastereomeric salts ((1S,2R)-2·(R)-3a, (1S,2R)-2·(R)-3c, (1S,2R)-2·(R)-3e·H2O, (1S,2R)-2·(R)-4a, and (1S,2R)-2·(R)-4b)) of which the acid part has methyl or ethyl group as the α-alkyl group. Their crystal structures and a schematic representation of the common hydrogen-bond network are shown in Figs. 3 and 4. It can be seen that the carboxylate oxygens, the ammonium hydrogens of 2·H+, and the hydroxy group of 2·H+ participate in the formation of the hydrogen-bond column, which is constructed around the 21-axis. The ammonium group of a crystallographically independent 2·H+ (Fig. 4, in the square) has three hydrogens, and two of them form hydrogen bonds with the oxygens of two different carboxylates (Fig. 4, A and B). These carboxylates are related to each other by translation along the b-axis. The other ammonium hydrogen of 2·H+ forms a hydrogen bond with the hydroxy oxygen of another 2·H+ (Fig. 4, C), which is related by the 21-axis (the columnar axis) to the original 2·H+ molecule. The hydroxy hydrogen of 2·H+ is used to form a hydrogen bond with the carboxylate oxygen (Fig. 4, D). This carboxylate is related by the 21-axis to the carboxylate hydrogen-bonded with the ammonium hydrogen. This pattern of hydrogen bonds is different from that usually found in the salts of carboxylic acids with primary amines.9 Here, the hydroxy group acts both as hydrogen donor and acceptor, and deeply penetrates into the columnar structure so as to form a novel hydrogen-bonding pattern.
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Fig. 3 Crystal structures of the less-soluble diastereomeric salts viewed down the b-axis (left) and columnar hydrogen-bond network formed around the 21-axis (right). The hydrogen atoms are omitted for clarity. The dotted lines and arrows show the hydrogen bonds and herringbone packings, respectively. The solid square represents the unit cell. a) (1S,2R)-2·(R)-3a. b) (1S,2R)-2·(R)-3c. c) (1S,2R)-2·(R)-3e·H2O. d) (1S,2R)-2·(R)-4a. e) (1S,2R)-2·(R)-4b. |
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Fig. 4 Schematic representation of the columnar hydrogen-bond network formed in the less-soluble diastereomeric salts. Hydrogen atoms as well as aryl and alkyl groups are omitted for clarity. The dotted lines show the hydrogen bonds. |
The intermolecular distances between N⋯
O and O
⋯
O are 2.6–2.9 Å in most cases;10 these values indicate quite strong hydrogen bonding. In addition, the hydrogen bonds have two characteristics: 1) The ammonium and hydroxy groups are located on almost the same plane as the carboxylate groups, which is perpendicular to the ac-plane. 2) The hydrogens are directed towards the lone pairs of the carboxylate oxygens; this location of the hydrogens favors formation of strong hydrogen bonds.11
In the hydrogen-bond column, the smallest α-substituent of the carboxylate, the hydrogen, is commonly oriented parallel to the columnar axis, while the other two substituents, the aryl and alkyl groups, are positioned perpendicular to it. Moreover, the largest aryl group is located away from the aromatic group of 2·H+, while the medium alkyl group is close to 2·H+.
The aryl groups (Ar(2)) in two translational 2·H+ molecules in a single hydrogen-bond column, as well as those (Ar(acid)) in two translational carboxylate molecules, stack to each other along the columnar axis, i.e. the b-axis. The mode of stacking is close to that reported for stacked aromatic molecules in a crystal.12,13
The stacked Ar(2) and Ar(acid) form herringbone packings; two or three kinds of herringbone packings are found in the less-soluble salts (indicated by arrows in Fig. 3). Hence, it is suggested that CH⋯
π interactions between these aromatic groups also play an important role in the stabilisation of these crystals.14 The number of herringbone packings strongly depends on the substitution of the carboxylates; especially, the p-substituent on the aromatic group of the carboxylates partially prevents the formation of the herringbone packing.
Thus, the crystallographic analyses of these less-soluble diastereomeric salts indicate that the dominant interactions in the crystals are 1) hydrogen-bonding interactions, which construct a supramolecular column, and 2) CH⋯
π interactions, which pack the inter-columns tightly with each other through herringbone packings. The less-soluble diastereomeric salts were efficiently stabilised by these two kinds of interactions.
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Fig. 5 Crystal structures of less-soluble a) (1S,2R)-2·(S)-6 and b) (1S,2R)-2·(S)-7. Left, viewed down the b-axis; middle, columnar hydrogen-bond network; right, schematic representation of the hydrogen-bond network. The hydrogen atoms are omitted for clarity. The dotted lines and arrows show the hydrogen bonds and herringbone packings, respectively. The solid square represents the unit cell. |
Stacking of the aromatic rings is also achieved, as was observed in Fig. 3. However, the relative position of the aromatic and α-alkyl groups of the carboxylate in the hydrogen-bond network is different for both (1S,2R)-2·(S)-6 and (1S,2R)-2·(S)-7; this change of orientation accompanies a change in the absolute configuration of the carboxylate in the crystals. In these crystals, herringbone packing is achieved between adjacent Ar(2) and Ar(acid) within a single columnar hydrogen-bond network (indicated by arrows in Fig. 5). In addition, the inter-columns are also stabilised by herringbone packing.
In both (1S,2R)-2·(S)-6 and (1S,2R)-2·(S)-7, the most bulky substituent tends to avoid Ar(2). So the bulkiness of the α-alkyl group of the carboxylate strongly affects the structure of the hydrogen-bond network and the absolute configuration of the carboxylate in the less-soluble diastereomeric salts.
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Fig. 6 Crystal structure of more-soluble (1S,2R)-2·(S)-4a. a) Viewed down the b-axis (left) and columnar hydrogen-bond network (right) formed in (1S,2R)-2·(S)-4a. b) Schematic representation of the hydrogen-bond network. The dotted lines show hydrogen bonds. The hydrogen atoms are omitted for clarity. The dotted lines and arrows show the hydrogen bonds and herringbone packings, respectively. The solid square represents the unit cell. |
While there is some consistency in the pattern of the hydrogen-bond network in the less- and more-soluble diastereomeric salts, the characteristics of the packing of the aromatic groups are considerably different between less-soluble (1S,2R)-2·(R)-4a and more-soluble (1S,2R)-2·(S)-4a; in more-soluble (1S,2R)-2·(S)-4a, the most bulky phenyl group, Ar(4a), is close to Ar(2). Although this orientation would bring about steric repulsion between the aromatic rings, it allows intra-columnar herringbone packing between Ar(2) and Ar(4a). The different orientation of Ar(4a) against Ar(2) in the columnar hydrogen-bond network causes a difference in the number of effective herringbone packings between the less- and more-soluble diastereomeric salts. In less-soluble (1S,2R)-2·(R)-4a, three kinds of inter-columnar herringbone packings are achieved between Ar(2) and Ar(4a), as shown in Fig. 3,13 while only two (inter-columnar and intra-columnar) are achieved in more-soluble (1S,2R)-2·(S)-4a.
Thus, the comparison of the crystal structures of the less-soluble (1S,2R)-2·(R)-4a with that of the more-soluble (1S,2R)-2·(S)-4a reveals that the difference arises from hydrogen-bonding and CH⋯
π interactions. The absolute conformation of (R)-4a favors such interactions, while that of (S)-4a does not.
The cell parameters of less-soluble (1R,2S)-2·(S)-3f and more-soluble (1S,2R)-2·(S)-3f are similar to each other, and even to those listed in Table 2,8 implying that similar networks are formed in these salts. This suggests that the chiral discrimination of the enantiomers of 2-arylalkanoic acids by enantiopure 2 would commonly occur during the formation and packing of columnar supramolecular hydrogen-bond networks.
Fig. 7 shows schematic drawings of the stackings of 1·H+ and 2·H+ along with the hydrogen-bond column. A comparison of the packing features of 2·H+ with those of 1·H+ shows that the direction of the C–N bond toward the columnar axis is not much different, and that the stacking of the aromatic groups is achieved in both hydrogen-bond columns. These facts strongly suggest that the hydrogen bonds formed by the ammonium group and the stacking of the aromatic rings play a principal role in the formation of the columnar network. A clear difference is found in the position of the hydroxy group. In the case of 1·H+, the hydroxy group is gauche to the phenyl group at C2, and the C1–O bond is parallel to the columnar axis. As a result, the hydroxy group is located apart from the hydrogen-bond column, and can participate in the hydrogen-bond network only from the outside. This geometry alters the role of the hydroxy group in the formation of the hydrogen-bond column in the presence or absence of a water molecule. In the case of 2·H+, the hydroxy group is anti to the aromatic group, and the C2–O bond is rather perpendicular to the columnar axis and takes almost the same direction as the C1–N bond against the columnar axis. This geometry allows the hydroxy group to penetrate deep into the hydrogen-bond column and would lead to the formation of a common and consistent hydrogen-bond network for the series of crystals in the present study.
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Fig. 7 Schematic representations of the stackings of a) 1·H+ and b) 2·H+ along the columnar axis. The hydrogen atoms are omitted. The cylinder represents a hydrogen-bond network formed by the carboxylate oxygens and the ammonium hydrogens. |
Thus, the formation of a consistent columnar supramolecular hydrogen-bond network in the less- and more-soluble diastereomeric salts of enantiopure 2 with 2-arylalkanoic acids is thought to arise, not only from the fixed cis-conformation of the amino and hydroxy groups of 2, but also from the geometrical relationship between the aromatic and hydroxy groups.
Moreover, the relative orientation of the ammonium, hydroxy, and aromatic groups of the resolving agent, which induce significant interactions for stabilisation of the crystals, is found to be quite important; a comparison of the molecular structures of crystalline 1·H+ and 2·H+ indicates that the ammonium and aromatic groups play a principal role in the formation of the columnar network, while the role of the hydroxy group changes depending on its orientation. These results suggest that to design a resolving agent, one should pay particular attention to the kind, number, and orientation of such interacting groups. In other words, the present results demonstrate the possibility that the design of a resolving agent could be achieved by considering the combination and orientation of supramolecular synthons16 in a resolving agent.
(1S,2R)-2, 3a, 4a, and 7 are commercially available. The preparations of other racemic acids were carried out as described in our previous paper.3 All solvents were distilled before use.
For (1R,2S)-2·(S)-3f, (1S,2R)-2·(S)-3f, and (1S,2R)-2·(S)-4a, an aqueous ethanol (water–ethanol = 5∶1, ca. 2 mL) solution of an equimolar mixture of the corresponding enantiopure acid (0.1 mmol) and amine (0.1 mmol) was placed in a sample tube (5 cm3), and the sample tube was left at 25 °C for two–seven days; the solvent was slowly evaporated to afford single crystals.
For (1R,2S)-2·(S)-3f and (1S,2R)-2·(S)-3f, only cell parameters could be determined. Mps and IR spectra for the above compounds are given in Table 3.
Salt | Mp/°C | νmax/cm−1 |
---|---|---|
(1S,2R)-2·(R)-3a | 169.0–171.0 | 3450, 2970, 2100, 2000, 1610, 1540, 1395 |
(1S,2R)-2·(R)-3c | 164.0–165.0 | 3240, 2050, 1610, 1550, 1395 |
(1R,2S)-2·(S)-3e·H2O | 133.5–134.0 | 3600, 3500, 3280, 1610, 1550, 1515, 1390 |
(1R,2S)-2·(S)-3f | 177.0–179.0 | 3250, 2090, 1600, 1540, 1390 |
(1S,2R)-2·(S)-3f | 169.0–172.0 | 3450, 2120, 1600, 1490, 1390 |
(1S,2R)-2·(R)-4a | 159.0–161.0 | 3200, 2970, 2700, 1520, 1400 |
(1S,2R)-2·(S)-4a | 137.5–138.0 | 3250, 2970, 2940, 2880, 2100, 1540, 1400 |
(1S,2R)-2·(R)-4b | 161.0–163.5 | 3200, 2120, 1610, 1525, 1390 |
(1S,2R)-2·(S)-4b | 108.0–112.0 | 3260, 2100, 1610, 1550, 1530, 1390 |
(1S,2R)-2·(S)-6 | 167.0–168.0 | 3430, 2970, 2000, 1620, 1560, 1400 |
(1S,2R)-2·(S)-7 | 197.0–198.0 | 3050, 2940, 2850, 1605, 1590, 1490, 1380 |
The structures were solved and refined by applying the CRYSTAN-GM package;17 the direct method (SIR9218) followed by normal heavy-atom procedures, and full-matrix least-squares refinement with all non-hydrogen atoms anisotropic and hydrogens in calculated positions with thermal parameters equal to those of the atom to which they were bonded. Atomic coordinates, thermal parameters, bond lengths and angles for all diastereomeric salts have been deposited at the Cambridge Crystallographic Data Centre. CCDC reference number 188/194. See http://www.rsc.org/suppdata/p2/a9/a905566e for crystallographic files in .cif format.
Footnote |
† Data relating to the salts of (1S,2R)-2 with 3–7 are available as supplementary data. For direct electronic access see http://www.rsc.org/suppdata/p2/a9/a905566e, otherwise available from BLDSC (SUPPL. NO. 57677, 4 pp.) or the RSC Library. See Instructions for Authors available via the RSC web page (http://www.rsc.org/authors). |
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