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Reply to the ‘Comment on “Theoretical study of the NO3 radical reaction with CH2ClBr, CH2ICl, CH2BrI, CHCl2Br, and CHClBr2”’ by C. J. Nielsen and Y. Tang, Phys. Chem. Chem. Phys., 2022, 24, DOI: 10.1039/D2CP03013F

Ibon Alkorta *a, John M. C. Plane b, José Elguero a, Juan Z. Dávalos c, A. Ulises Acuña c and Alfonso Saiz-Lopez *c
aInstituto de Química Médica (CSIC), Juan de la Cierva, 3, E-28006 Madrid, Spain. E-mail: ibon@iqm.csic.es
bSchool of Chemistry, University of Leeds, LS2 9TJ Leeds, UK
cDepartment of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano, CSIC, Madrid E-28006, Spain. E-mail: a.saiz@csic.es

Received 13th October 2022 , Accepted 29th November 2022

First published on 19th January 2023


Abstract

In this Reply, we answer the main argument raised in the Comment about the energy of the NO3 radical and its influence in the reaction profiles of the reaction of the NO3 radical with CH2ClBr, CH2ICl, CH2BrI, CHCl2Br, and CHClBr2 by C. J. Nielsen and Y. Tang. The optimized geometry of the NO3 radical has been obtained using 49 DFT functionals: 26 functionals predict a minimum with D3h symmetry and 23 with C2v symmetry. The former functionals have been used to calculate the thermodynamic values of three reactions (X + HNO3 → XH + NO3, X= OH, CH3 and CCl3) and compared with experimental data. Those functionals with smaller errors have been used to recalculate the barriers of the reaction of NO3 with CH2ClBr, CH2ICl, CH2BrI, CHCl2Br, and CHClBr2. The results show differences of 10.5 kJ mol−1 when compared to those obtained with the M08HX functional.


The molecular symmetry of the ground state of the NO3 radical has been difficult to determine by experiment1 and theoretical calculation.2–4 However, the latest experimental results indicate that it has D3h symmetry5 with an NO distance of 1.240 Å6 (the bond distance of 1.238 Å mentioned by Nielsen and Tang does not appear in Kawaguchi et al.7). Our calculations with the M08-HX DFT functional provide a C2v symmetry minimum, while the D3h geometry corresponds to a second-order saddle point with a relative energy of 9.6 kJ mol−1.8

We have examined the performance of 49 functionals (using in all cases the 6-311+G(2df,2p) basis set): for 269 of them the D3h geometry is predicted to be the minimum, while for 2310 the D3h geometry exhibits two degenerate imaginary frequencies. In order to check the reliability for studying proton transfer reactions of those DFT functionals that predict NO3 to be a minimum with D3h symmetry, we examined the enthalpy of three reactions for which experimental data is available (eqn (1)–(3)). The first reaction was already proposed in the Comment by Nielsen and Tang, but we think that the second and third are probably more appropriate in the present case since they involve CH groups as the hydrogen donor, as in the reactions studied in our paper.8 The heats of formation of all the molecules were obtained from the NIST database,11 apart from the NO3H0f = 73.72 ± 1.38 kJ mol−1)12 and OH (ΔH0f = 37.3 ± 0.7 kJ mol−1)13 radicals.

 
OH + HNO3 → H2O + NO3, ΔrH298 = −71.10 ± 1.59 kJ mol−1(1)
 
CH3 + HNO3 → CH4 + NO3, ΔrH298 = −13.57 ± 1.78 kJ mol−1(2)
 
CCl3 + HNO3 → CHCl3 + NO3, ΔrH298 = 34.00 ± 3.82 kJ mol−1.(3)
The average calculated errors of the energies obtained in these three reactions, for the 26 functionals under consideration, range between +19 and −69 kJ mol−1. Only five functionals show an average unsigned error below 8 kJ mol−1 (approx. 2 kcal mol−1): B3PW91 (3.8 kJ mol−1), X3LYP (4.6 kJ mol−1), B3LYP (5.1 kJ mol−1), and B971 and B972 (8.0 kJ mol−1).

We therefore used these five functionals to recalculate the proton transfer barrier and the corresponding relative energy of the exit channel, for the five reactions in our study. The average values are listed in Table 1, together with the energies computed using the M08HX functional. The TS of the proton transfer computed at M08HX is between 8.8 and 11.9 kJ mol−1 (average 10.5 kJ mol−1) lower than the average of the five selected DFT methods. The effect is larger in the evaluation of the proton transfer exit channel, where the differences in the overall reaction energy predicted by M08HX are 37.8, 35.2, 35.1, and 51.5 kJ mol−1 for the four reactions (with three of these giving errors that closely match the 37 kJ mol−1 difference anticipated in the Comment).

Table 1 Proton transfer barrier and relative energy (kJ mol−1) of the exit channel at M08HX level and average of the selected five DFT functionals, in parenthesis
CH2ClBr:NO3 CH2ClI:NO3 CH2BrI:NO3 CHCl2Br:NO3 CHClBr2:NO3
TS-H transfer 16.7 (28.1 ± 2.3) 14.7 (23.5 ± 2.6) 13.3 (22.4 ± 2.7) 13.7 (25.6 ± 2.6) 11.7 (23.2 ± 2.7)
Exit channel −58.2 (−20.4 ± 1.6) −57.1 (−21.9 ± 1.4) −53.6 (−19.8 ± 1.2) −74.0 (−38.9 ± 1.6) −73.4 (−21.9 ± 1.4)


These results partially agree with the comments of Nielsen and Tang, although the difference in the barrier heights between M08HX and the five chosen DFT methods is significantly smaller than the ∼37 kJ mol−1 that they anticipated. Importantly, the main conclusion of our paper is unchanged: the oxidations of CH2ClBr, CH2ICl, CH2BrI, CHCl2Br, and CHClBr2 by NO3 are not competitive with other removal processes.

Conflicts of interest

The authors declare that they have no conflicts of interest.

Acknowledgements

This work was carried out with financial support from the Ministerio de Ciencia, Innovación y Universidades (PGC2018-094644-B-C22) and Comunidad de Madrid (P2018/EMT-4329 AIRTEC-CM). Thanks are also given to the CTI (CSIC) for their continued computational support. This study received funding from the European Research Council Executive Agency under the European Union's Horizon 2020 Research and Innovation Programme (Project ERC-2016-COG 726349 CLIMAHAL).

References

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