Raúl Guajardo-Maturana*ac,
Ximena Zarate*b,
Francisca Claveria-Cadizc and
Eduardo Schotta
aDepartamento de Química Inorgánica, Facultad de Química, Pontificia Universidad Católica de Chile, Vicuña Mackenna 4860, Macul, Santiago, Chile. E-mail: rhguajar@uc.cl
bInstituto de Ciencias Químicas Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile, Avenida Pedro de Valdivia 641, Santiago, Chile
cDoctorado en Fisicoquímica Molecular, Universidad Andrés Bello, República 275, Santiago, Chile
First published on 13th October 2016
The storage and detection of different types of molecules using porous materials such as metal–organic frameworks (MOFs) has currently become an area of interest in chemistry. In this sense, non-covalent interactions in host–guest arrays are among the most significant topics to address. In this work, the inclusion of a series of gases in the cavity of a minimal secondary building unit (SBU), namely, [Ag2(bisox)3] as the host was studied in terms of their non-covalent interactions and optical properties using different computational approximations. The relevant interaction energies indicated favorable inclusion of incoming guests in the respective host. Consequently, the decomposition of the interaction energy within the Ziegler–Rauk scheme revealed significant differences within the series of studied gases. Hence, the potential selectivity of the [Ag2(bisox)3] cage for a particular gas within the series was investigated. Natural orbital for chemical valence (NOCV) analysis was carried out to visualize possible channels of charge transfer between the host–guest pairs. Non-covalent interaction (NCI) analysis supports the fact that different types of weak interaction are involved in the series of studied gases and highlights remarkable differences between polar and non-polar guests. Otherwise, the ability of the studied cage to trap gases was evidenced by changes in the spectral properties of the free cage with respect to those of cages containing guests. This was investigated via computational analysis of the UV-vis absorption spectra. Furthermore, electron density difference maps (EDDMs) were employed to reveal the character of the electron transitions.
MOFs may be defined as supramolecular solids that are constructed by the combination of metal ions or clusters and linkers through strong bonds, which provide robustness to the linking units. Furthermore, MOFs can be considered to be materials constructed from secondary building units (SBUs).30,31
The field of MOFs has become one of the fastest growing areas in chemistry. This is demonstrated by the ever-increasing number of reported structures and the vast number of published articles, as well as by the constant expansion in the scope of research and engagement of researchers.1–31 The main interest is focused on porous structures in the framework. Recent studies of frameworks of silver formed by the bis(isoxazolyl) ligand 1,4-bis(3,5-dimethylisoxazol-4-ylmethyl)benzene, which is denoted hereafter as bisox, have attracted much attention. This semi-rigid linker contains methylene spacers between the isoxazole rings and the central benzene ring, which allow it to adopt numerous different conformations.
Thus, the reaction between bisox and silver perchlorate in methanol gave crystals of [Ag2(bisox)3] cages, which represent an SBU species of an MOF structure, as shown in Fig. 1, which has recently been synthesized by Burrows et al.32 In this paper, we propose to investigate theoretically the energetically favorable molecular arrays formed by [Ag2(bisox)3] cages upon the inclusion of a series of gases (such as CH4, CO2, and N2, among others) for subsequent gas storage applications. Specifically, we intend to study the interactions between the [Ag2(bisox)3] unit or cage structure and a set of various gases. In this context, we propose to study, by employing computational methods, the interactions involved between the cage and the group of gases via energy decomposition analysis (EDA).33–35 Furthermore, the non-covalent interaction (NCI)36,37 properties were determined for the interactions of the subunit (host) with the gas (guest) substrates, which might be captured inside the cage. This analysis provides a graphical index, which enables the characterization of the binding forces within the host–guest pair upon the inclusion of a guest in the MOF structure. The interactions of molecules trapped inside the cage are governed by weak forces. The inclusion of calculations of NCI is of particular importance, because their analysis gives rise to proposed models of interactions for future gas storage applications.
Finally, to understand whether the optical properties of the cage are affected when gas molecules are trapped in the cage, it is essential to comprehend the effect of gases on the energetic and electronic properties of low-lying excited states. In order to gain insight into these properties, TD-DFT analysis for the calculation of the vertical electronic spectra of the free host and the host–guest pairs was performed. The elucidation of the character of the transitions was supported by electron density difference map (EDDM) plots, which are currently a useful tool for studying charge differences in photochemical processes.38
The absorption spectra of the [Ag2(bisox)3] cage and systems that consisted of the cage structure incorporating a set of various gases (host–guest) were computed by means of time-dependent DFT (TD-DFT)54 and 60 excitations were calculated. For this analysis, the CAM-B3LYP-D3 range-separated functional55 was employed. This functional provides additional long-range corrections. These computations provided electronic properties such as vertical excitation energies and oscillator strengths. To analyze the nature of electronic transitions via photon absorption, plots of electron density difference maps (EDDMs) are presented. The visualization and plotting of the EDDMs were performed using GaussSum (v. 2.2.6).56
The structure of [Ag2(bisox)3] is constructed from three bisox bridge moieties that hold together two silver(I) atoms with a coordination number of 3 and has a semi-rigid structure with a cavity diameter of around 8.0 Å. By this calculation method, the calculated [Ag–N], [N–O], [N–C] and [O–C] bond distances are 2.29 Å, 1.41 Å, 1.32 Å and 1.36 Å, whereas the experimental distances are 2.23 Å, 1.35 Å, 1.30 Å, and 1.35 Å, respectively. Moreover, the theoretical [N1–Ag–N2], [C1–C2–C3], and [Ag–N1–O] bond angles are 119.8°, 113.1° and 118.7° and the corresponding experimental values are 119.6°, 111.9° and 114.3°, which indicates that the results were accurate for the level of theory that was used. This structure might be a suitable receptor for guest gas molecules, which enabled the study of the hypothetical inclusion of a series of guest molecules (N2, H2O, CO2, CH4 and C2H6) in the cavity of the host structure. Furthermore, the obtained structural parameters of the cage-guest system revealed slight deviations from the isolated [Ag2(bisox)3] host structure; however, the cavity diameter remained more or less constant (Table S1†).
With the aim of gaining a deeper understanding of the formation of such complexes, we performed energy decomposition analysis within the NOCV scheme,46–50 which has been employed for the description of the interactions of host–guest systems.61 Such analysis considers the formation of a molecule AB (with the wavefunction ΨAB) from its respective fragments. For the current systems, an energetically favorable situation is observed, which is accounted for by the interaction energy (Eint) between the fragments of the host–guest pair, including the dispersion energy. The interaction energy is calculated according to:
ΔEint = ΔEelstat + ΔEPauli + ΔEorb + ΔEdis |
More insight into the orbital interactions between the fragments can be obtained from a study of NOCV (Ψi), which is defined as the eigenvector that diagonalizes the deformation density Δρ(r), that is, decomposes it into deformation densities Δρi(r) to provide information about the channels of charge transfer.
To gain an understanding of the interaction energies within the [Ag2(bisox)3]–[gas guest] systems, energy decomposition analysis (EDA) was performed, considering the cage and the gas as constituent fragments: see Table 1. When the cage was experimentally prepared it contained diethyl ether (Et2O) adsorbed inside the cage cavity. This molecule was exchanged with other gases in order to investigate the more stable cage-stored gas interactions. This analysis was performed by considering the hypothetical inclusion of a series of gas guest molecules, namely, N2, CH4, CO2, H2O and C2H6, in the cage cavity of the host.32 Also, the interaction of the cage with Et2O was studied. Thus, the prominent inclusion of a gas in the cavity of the host structure was investigated via attractive interaction forces. In this sense, the system was studied in terms of the following corresponding fragments, namely, the cage and the gas as fragments A and B, respectively. The results for the overall interaction energy ΔEint denote energetically favorable inclusion of the incoming guests inside the [Ag2(bisox)3] cage structure. Thus, values of non-covalent bonding interactions were observed for the ΔEint term. This obtained result is in agreement with the weak forces involved in this hypothetical series. The ΔEint term represents a non-covalent bonding interaction and exhibits a slight increase from the value for N2 gas, which is the smallest in comparison with those of the more bulky gas molecules, with values of ΔEint of N2 (−6.5) < CH4 (−7.27) < CO2 (−7.97) < H2O (−10.02) < C2H6 (−11.16) < Et2O (−16.95 kcal mol−1). This is in accordance with the fact that the bulkier a gas molecule is, it generates greater polarization owing to larger and more dispersed electron clouds, and there arise induced instantaneous polarization multipoles (i.e., dipole and quadrupole moments, among others). Further analysis of the attractive interaction terms, namely, ΔEelstat, ΔEorb and ΔEdis (see Table 1) revealed that the dispersion energy is the major stabilizing term, with values of 52.3% in the case of N2, 59.2% for CH4, 58.8% for CO2, 65.8% for C2H6 and 60.6% for Et2O. Moreover, in the case of H2O this stabilizing force represented 33.3% of the total attractive terms. This observation is in agreement with the fact that this gas molecule is governed by a permanent dipole moment, which gives rise to greater contributions of the orbital and electrostatic components, which have values of 29.2% and 37.5%, respectively. Thus, when water is the guest the orbital energy makes the largest contribution in the series to the overall stabilizing forces. This fact should reflect major selectivity for H2O gas, despite the fact that the total interaction energy becomes slightly more stable for larger molecules such as C2H6 and Et2O. In addition, the maximum value of the orbital contribution should result in a tendency to selectivity in the host cage, as will be observed from cases of multiple guest inclusion. The ΔEorb term accounts for the covalent character of the interaction associated with charge transfer between the fragments. In this sense, the orbital interactions were investigated using NOCV analysis. In this analysis were plotted the main contours of the contributions of deformation density (Δρi). The pictures that were obtained show the NOCV orbitals that are involved in charge transfer interactions, which are shown in Fig. 2.
EDA (kcal mol−1) | [Ag2(bisox)3][N2] | [Ag2(bisox)3][CH4] | [Ag2(bisox)3][CO2] | [Ag2(bisox)3][H2O] | [Ag2(bisox)3][C2H6] | [Ag2(bisox)3][Et2O] |
---|---|---|---|---|---|---|
ΔEPauli | 2.66 | 2.41 | 3.65 | 4.60 | 3.83 | 5.52 |
ΔEorb | −2.42 (26.3%) | −1.88 (19.4%) | −2.03 (17.5%) | −4.27 (29.2%) | −2.03 (14.3%) | −3.66 (16.3%) |
ΔEelstat | −1.97 (21.4%) | −2.07 (21.4%) | −2.86 (24.6%) | −5.48 (37.5%) | −2.84 (20.0%) | −5.20 (23.2%) |
ΔEdis | −4.82 (52.3%) | −5.73 (59.2%) | −6.74 (58.8%) | −4.87 (33.3%) | −9.35 (65.8%) | −13.60 (60.6%) |
ΔEint | −6.55 | −7.27 | −7.97 | −10.02 | −11.16 | −16.95 |
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Fig. 2 The main contours of the contributions of deformation density (Δρi) determined by EDA-NOCV analysis for the [Ag2(bisox)3][H2O] and [Ag2(bisox)3][H2O]4 complexes. |
In order to gain a deeper insight and understanding of the interaction forces involved and owing to the large size of the cavity of the host species (which can include inside its cavity more than one guest molecule), further calculations were performed that considered the inclusion of a greater number of gas guest molecules inside the host cage. Thereby, the inclusion of more species led to favorable structures with attractive interaction energies ΔEint. This was carried out by taking into account the inclusion of four equivalents of N2, CH4, CO2 and H2O, which will be distinguished from cases of the inclusion of one molecule by the terms [N2]4, [CH4]4, [CO2]4 and [H2O]4. In the case of ethane, only three molecules were included owing to the greater size of this molecule, and this case will be distinguished by the term [C2H6]3. The inclusion of a greater number of molecules results in the collapse of the main host structure.
Consequently, the respective destabilizing term related to the Pauli repulsion energy exhibited a similar tendency as in the case when one gas molecule was included and displayed greater relevance when [CO2]4 and polar molecules such as [H2O]4 were guests: see Table S2 in the ESI.† As mentioned above in the cases when one gas molecule was included, the interaction energy increased or became more stable as the studied gas became bulkier. However, for the inclusion of multiple guests it was observed that ΔEint increased from [N2]4 (−21.01), [CH4]4 (−23.43), [CO2]4 (−26.73), and [C2H6]3 (−27.75) to [H2O]4 (−32.33 kcal mol−1). Despite the fact that water and carbon dioxide as guest gases have the most unfavorable ΔEPauli repulsive terms, these display the most attractive values of both electrostatic and orbital terms. This fact results in more favorable interaction energy. Thus, [CO2]4 guests display an almost equivalent value of ΔEint in comparison with that of [C2H6]3 species, in spite of the fact that fewer atoms interact with the [Ag2(bisox)3] host cage. In this context, the electrostatic term stabilizes the interactions in the order of [N2]4 (−6.00), [CH4]4 (−8.17), [C2H6]3 (−10.88), [CO2]4 (−14.42) to [H2O]4 (−24.84 kcal mol−1), which indicates greater attractive interaction energy towards the most polar guests. Furthermore, as in the hypothetical counterpart when one gas molecule was included, [H2O]4 provided the most stable value of the orbital contribution, as well as the overall interaction energy. This value was analyzed by means of NOCV orbitals, showing the major contours of the contributions of deformation density (Δρi) (Fig. 2). In this figure, it can also be observed that charge transfer occurs from the lone pair of the water guest molecule. Consequently, this fact would be reflected in selectivity of the host for water species. In addition, the cases of N2 gas in both studied systems (the inclusion of single and multiple molecules) display orbital quantities of 26.3% and 23.5%. These favorable calculated percentages are associated with the interaction of the available lone electron pairs of this guest molecule. Otherwise, as an overall tendency, the dispersion energy represents the main contribution within the attractive terms, with percentages of 56.6% for the complex with [N2]4, 60.6% for [CH4]4, 51.8% for [CO2]4, 27.6% for [H2O]4 and 59.2% for [C2H6]3 among the inclusion compounds with multiple guests. Therefore, for non-polar guests the dispersion term provides a greater percentage of the total interaction force. Hence, as shown for the guests [N2]4, [CH4]4 and [C2H6]3, the dispersion term increases for bulky guests. This is attributed to the fact that their polarizability also increases.
In addition, non-covalent interactions were investigated via the use of the non-covalent index (NCI) approach, which relies on topological analysis of the electron density and its derivatives in regions of low density based on the reduced density gradient (s(ρ)), which is defined as:
Regions on the NCI isosurface indicate both stabilizing and destabilizing weak interactions. These can be distinguished according to the sign of the second eigenvalue of the Hessian matrix (λ2), where the sign of λ2 can vary accordingly; thus it is suggested to be a useful descriptor for characterizing such situations of weak interactions. Here, negative values of the product represented by ρ*sign(λ2) denote stabilizing interactions. Values close to zero indicate weak interactions (van der Waals forces), whereas positive values represent cases of weak repulsion.
Moreover, the results of 3D NCI analysis are depicted in Fig. 3 and 4, which reveal stabilizing non-covalent intermolecular interactions between gas molecules and the corresponding cage, which is indicated by a green region. The weak forces involved are related to current dispersive interactions due to induced multipoles, which are denoted as interactions of the induced dipole-induced dipole type. In Fig. 3 are shown the NCI plots for one equivalent gas guest molecule. Significant affinity of each gas molecule for the atoms of the host cage structure is observed. In Fig. 4 can be observed more pronounced dispersive forces for the [CH4]4 and [C2H6]3 systems, which are indicated by larger green regions in the corresponding plots. For the [H2O]4 complex a decrease in the green surfaces is noted, which is related to a smaller dispersive interaction, which is compensated for by an orbital contribution.
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Fig. 3 NCI plots of the studied complexes, where red regions denote strong stabilizing forces and green-yellow regions denote weak van der Waals forces. |
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Fig. 4 NCI plots for several guest molecules incorporated in the host cage. The red regions denote strong stabilizing forces and the green-yellow regions denote weak van der Waals forces. |
According to the results, it is observed that the guests induce a red shift in the spectrum of the host and that several H2O molecules generate a dramatic change, which is mainly represented by new low-energy bands. Moreover, the absorption profiles of the cages with non-polar guest molecules (CH4 and C2H6) are similar and display a red shift effect with respect to the spectrum of the host. The intensity of the lowest-energy band of the spectrum of the cage with CH4 is the most similar to the intensity for the free host system.
On the other hand, the spectra of the cages with N2 and CO2 display a red shift and lower intensities of the bands with respect to those of the free cage. It is worth mentioning that in general the UV-vis absorption profiles of cages containing one molecule and those containing several molecules display similar energies. In the case of CO2, the largest difference between the cage containing one molecule and the cage containing four molecules was observed, as the profile for one molecule is similar to that of the free host, but a remarkable difference was displayed for four molecules.
The frontier molecular orbitals (MOs), namely, the HOMO and LUMO, are involved in all the described transitions. To perform an appropriate description of the nature of the transitions, EDDM analysis was carried out for the lowest-energy band (λmax) (Fig. 6). This analysis provides representations of the changes in electron density upon a given electron transition. Generating the relevant maps involves the use of information given in calculations of a singlet excited state and uses the configurations that contribute to the transition of interest. An EDDM can be plotted for the electron density determined for a system before and after excitation.38 These plots display in a more explicit manner the probability of the transfer of an electron from one fragment to another.
Therefore, it was possible to determine the localization of the occupied MOs of the systems that would undergo depopulation and the unoccupied MOs that would be populated after excitation. For most of the studied systems, the transitions occur between the p-orbitals of the ligands with little contribution from the metal, except for N2, which interestingly displays a contribution from the N2 orbitals. These results were observed for one as well as four guest molecules.
The decomposition of the interaction energy into its Pauli repulsion, electrostatic, orbital and dispersion components showed clear differences between polar and non-polar guest molecules. The dispersion energies provide dominant stabilizing contributions to the overall energy as a general tendency. In the case where H2O is the guest molecule, the orbital and electrostatic energy represent 66.7% and 72.4% of its stabilizing interaction for the inclusion of single and multiple guest molecules, respectively, which allows it to be inferred that this favorable interaction might result in potential selectivity of the host cage for H2O molecules. On the other hand, for non-polar guests such as N2, CH4 and C2H6, the dispersion term displays values that range from 56.6% to 60.6%, which represent a major contribution to the weak interaction force. In addition, the dispersion energy becomes more stable for C2H6 than for H2O, which is in agreement with the fact that more bulky molecules are more polarizable, which leads to a higher dispersive force. However, this fact does not necessarily lead to selectivity within the series, because more than one molecule of N2, H2O, and CO2 can be placed inside the cage, which leads to more favorable interaction energies towards CO2 and the polar guest molecule H2O. The trapping of gases in the cage is evidenced by changes in the spectral properties of the free cage with respect to those of cages containing guests. This was determined via computational analysis of the UV-vis absorption spectra, by which features such as new bands, red shifts and changes in the intensity of the peak corresponding to λmax were observed. EDDMs revealed the participation of the N2 orbitals, which act as a target of the lowest-energy electronic transition for the cage with one gas molecule as well as the cage with four gas molecules.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c6ra22905k |
This journal is © The Royal Society of Chemistry 2016 |