Open Access Article
Sapna
Singh
,
Archana
Velloth
,
Rishi Ram
Mahato
,
Surbhi
Grewal
,
Subhabrata
Maiti
* and
Sugumar
Venkataramani
*
Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Sector 81, SAS Nagar, Knowledge City, Manauli – 140 306, Punjab, India. E-mail: smaiti@iisermohali.ac.in; sugumarv@iisermohali.ac.in
First published on 12th March 2025
We report an azothiazole-based probe as a chemosensor for urea with a LOD of 45 μM. The underlying sensing principle is an instantaneous color change associated with the complex forming between the probe and ammonia, a hydrolysis product of urea catalyzed by the enzyme urease. In addition, the probe has a broad scope in sensing biologically significant amines such as arginine and lysine across a wide range of pH (4 to 8). Through extensive spectroscopic and computational studies in conjunction with control experiments, the importance of H-bonding in the sensing mechanism has been unraveled, revealing the stoichiometry, binding constant and LOD of these analytes with the probe. Indeed, the two individual amino acids can be distinguished by the spectral changes associated with UV-vis spectroscopy or by contrasting color diffusion under agarose gel conditions. Moreover, the probe shows a broad scope in detecting a range of aliphatic primary and secondary amines, including cyclic amines. The utility of the probe has also been demonstrated by using it for sensing urea in urine samples. These attributes make this probe a cost-effective, reusable and versatile chemosensor with ease of handling for sensing multianalytes by varying the conditions and detection modes.
In this regard, we envisioned an azo compound with appropriate substituents and complementary binding sites as a colorimetric probe having three H-bond donor and one H-bond acceptor sites, which can change its color on binding with ammonia. Our hypothesis relies on the response of the strong absorption properties of the azo chromophore upon analyte binding (Scheme 1b).19,20 In addition, the trans–cis photoisomerization and the inherent thermal relaxation of the cis isomer could be an additional handle for improving the detection limit and spatiotemporal control in sensing.21–25 Conversely, substitution-induced hindrance to photoswitching in certain azo systems can induce a fluorescence response that can enhance the detection limit.26,27 In this context, we designed an azothiazole probe comprising H-bonding acceptor sites and a β-naphthol unit, having a potential H-bond donor (OH group). As a proof-of-concept, the designed probe was tested by adding aqueous ammonia, resulting in a contrasting color change indicative of complexation. In addition, the probe showed versatility in binding with selective amino acids (arginine and lysine) and certain primary and secondary aliphatic amines. In particular, understanding the biological significance of arginine and lysine paves the way for their sensing and quantification, which is quite critical in viral infections and in the diagnosis of rare metabolic disorders like cystinuria and hyperlysinemia, respectively.28,29 Although these two amino acids can be detected in various ways, developing cost-effective, rapid, sensitive and selective sensors has high potential.30–36
Herein, we report a molecular probe with a broad scope for sensing multiple analytes of biological importance, especially urea, arginine and lysine. Extensive spectroscopic and computational studies and control experiments unraveled their binding and sensing mechanisms. More importantly, the probe's real-life applications as a multi-analyte chemosensor was demonstrated using urine samples, highlighting its broad scope in detection.
:
2) mixture by adding the urease enzyme (20 nM in Milli-Q water). No color change was observed when a mixture of urea and the probe or urease and the probe was incubated, even for extended periods. However, the color changed from orange to pink within five to ten minutes when all three components were present, confirming the formation of ammonia and its complexation with the probe (Fig. 1b and movie M1 in the ESI†). Afterwards, the probe was also screened with various amino acids. In this regard, to a solution of probe P1 (50 μM in DMSO), different aqueous amino acid solutions (10 eq. each) were added. Except for arginine and lysine, no other amino acid responded with a color change, demonstrating the utility of the probe for the detection of urea and selective amino acids by the naked eye (Fig. 1c).
:
8 v/v), probe P1 showed an absorption band centered at 490 nm without targeted analytes. When Arg or Lys was introduced into the solution, a significant bathochromic shift of 60 and 16 nm was observed (Fig. 2a). On titrating probe P1 against Arg, a progressive increase in the band intensity centered around 545 nm was observed, indicating more complexation. Similarly, a band centered around 506 nm was observed with incremental addition of Lys solution to the probe (see Fig. S2.6 in the ESI†). The distinct shifts in the emerging bands relative to the absorption band of probe P1 can distinguish the individual amino acids, arginine and lysine. All these results corroborated well with the computational data (Fig. 2b and see section S7 in the ESI†).
Considering the maximum intensity change in the absorption profile at 560 nm, we made a linear calibration plot between the analyte (arginine) concentration (5 to 40 μM) and the absorbance at 560 nm. From the linear calibration plot and using the formula 3σ/m (m, slope of the linear plot and σ, the standard deviation), the limit of detection (LOD) for arginine was estimated to be 0.9 μM (see Fig. S3.1a in the ESI†). Similarly, the LOD for lysine under identical conditions (at 560 nm, the non-overlapping shoulder absorption) was found to be 1.79 μM (see Fig. S3.2a in the ESI†). These results indicated the reasonably higher sensitivity of P1 towards arginine than towards lysine. Association (or binding) constants (Ka) for both the analytes with the probe were estimated using Benesi–Hildebrand (B–H) plots. The slope of the linear fit revealed the binding constants to be (1.41 ± 0.06) × 104 M−1 and (3.64 ± 0.03) × 104 M−1 for arginine and lysine, respectively (see sections S3.1b and S3.2b in the ESI†). Furthermore, the stoichiometric ratios between the probe and the amino acids were estimated using Job's plot. The absorption changes at 560 nm of different mole fractions of probe P1 and the individual amino acids were examined in this regard. The resulting Job's plot revealed a 1
:
1 complexation between the probe and arginine, whereas lysine showed a stoichiometry of 2
:
1 (P1
:
Lys) (see sections S3.1c and S3.2c in the ESI†). Similar titration experiments were also adopted for urea sensing with the help of the urease enzyme (5, 10, and 20 nM). The kinetics mode experiments and UV-vis spectroscopic analysis revealed that a minimum of 10 minutes is required for maximum absorption changes (Fig. 2c). Accordingly, screening experiments were performed with an incubation period of 10 minutes at various urea concentrations ranging from 100 μM–10 mM (see Fig. S3.3 in the ESI†). Following these data, the LOD has been estimated to be 45 μM using a linear calibration up to 1 mM (Fig. 2d).
Since probe P1 was not exhibiting photoisomerization, we examined its fluorescence behavior in the DMSO/H2O (2
:
8, v/v) mixture, where it showed moderate emission. A solution of P1 showed broad fluorescence emission centered at 590 nm upon excitation at 490 nm. Interestingly, the addition of arginine (in incremental mode) led to the quenching of the emission intensity at 590 nm with the emergence of a bathochromic shifted emission signal centered at 620 nm (see Fig. S3.4 in the ESI†). The LOD was estimated to be 0.13 μM using a linear calibration from 5 to 40 μM arginine concentration (Fig. 2e). A similar behavior was also observed upon the addition of lysine to P1. Conversely, other amino acids showed no impact on the emission behavior of P1 under similar conditions.
Considering the presence of different H-bond acceptor sites such as azo nitrogen, thiazole nitrogen, and hydroxyl proton, the acidic pH could influence the protonation of any of these sites, leading to such observations (see Fig. S4.1d in the ESI†).
To understand the effect of pH on the P1–Arg complex, P1 was dissolved in a phosphate buffer (10 mM) solution in the pH range of 3 to 11. Complex formation was observed in the pH range of 4 to 8, based on the expected spectral features around 540 nm. Similar experiments were performed for lysine. Lysine also showed rapid complex formation in the pH range of 4 to 8. Outside this pH range, protonation or deprotonation of the probe/amino acid leads to blocking of binding sites and inhibition of complexation. These variable pH studies gave insights into the involvement of multiple probe sites in the complex formation (see Fig. S4.1b in the ESI†).
Considering the criticality of identifying the preferred binding sites in P1 for the sensing mechanism, we screened three additional probes P2–4 having structural variations. For control experiments, all probes were designed to remove or block potential binding sites selectively. In probe P2, the thiazole unit of P1 was replaced with a phenyl ring. On the other hand, probe P3, having a 6-chlorobenzothiazole unit, was synthesized. Additionally, a 2-naphthol unit was replaced with a phenyl ring in P3. In P4, the hydroxyl group was converted into –OEt through O-ethylation.
All the probes were tested independently with 10 eq. of lysine and arginine or ammonia; however, none of them exhibited color or spectral changes in response to Arg and Lys, but P2 showed a color change in the presence of ammonia (Table 1). All the control experiments with the newly designed probes P2–4 demonstrated the significance of cooperative binding in the sensing mechanism.
To identify the binding sites, titrations were carried out using 1H NMR spectroscopy between probe P1 and the analytes arginine and lysine. Prior to that, the proton signals of probe P1 were unambiguously assigned using 2D NMR spectral data, including 1H–1H correlation spectroscopy (COSY), heteronuclear single quantum correlation (HSQC), and heteronuclear multiple bond correlation (HMBC) (see Fig. S4.2 in the ESI†).
Upon incremental addition of arginine from 0.5 eq. to 7.5 eq. in 5% D2O in DMSO-d6 into a solution of P1 in DMSO-d6 (5 mM), the proton signal at 8.45 ppm showed a downfield shift up to 8.87 ppm. In contrast, all other proton signals showed upfield shifts (Fig. 3a). These proton shifts arise from a strong interaction between arginine and the probe molecule. Also, the upfield shifts of the protons corroborate well with the changes in the computed Mulliken charges on the protons of probe P1 before and after complexation with arginine (Fig. 3d and e). Surprisingly, the Mulliken charge at 8′H of probe P1 did not change upon complexation, indicating the possibility of weakening of the shielding effects due to azo nitrogen, leading to a higher chemical shift. Similar spectral changes were also observed for the complexation of the probe with ammonia and lysine; however, in the case of lysine, the shifts were limited, confirming the 2
:
1 complexation (see Fig. S4.3 and S4.4 in the ESI†). The spectroscopic and computational results on binding studies between the probe and the analytes (arginine, lysine and urea/NH3) are summarised (Table 2).
| S. no. | Parameter | Method | Technique | Arginine | Lysine | Urea/NH3 |
|---|---|---|---|---|---|---|
| a Computations were performed at the B3LYP-D3/6-311G(d,p) level of theory. b The backbone amine of the lysine/guanidine part of arginine or the NH2 part of ammonia was predicted to be the complementary binding site of the analytes. | ||||||
| 1 | Stoichiometry | Job's plot (computationala) | UV-vis | 1 : 1 |
1 : 2 |
1 : 1a |
| 2 | Absorption band (λmax/nm) | Titration | UV-vis | 545 | 506 | 528 |
| Emission band (λex/λem/nm) | Fluorescence | 490/590 | 490/590 | 490/590 | ||
| 3 | Association constant Ka (M−1) | Benesi–Hildebrand plot | UV-vis | 1.41 × 104 | 3.64 × 104 | — |
| 4 | Limit of detection, LOD (μM) | Linear calibration plot | UV-vis | 0.91 | 1.79 | 45 |
| Fluorescence | 0.13 | — | — | |||
| 5 | Binding energies (kcal mol−1) | Computationala | Computationala | −9.4 | −27.6 | −32.5 |
| 6 | Binding sites | Titration (computationala) | NMR | N N, OH, N thiazole of P1b |
||
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2 complex. Conversely, the other amino acid failed to produce color changes. Similar color changes were also produced upon keeping the strip in close contact with ammonia fumes (Fig. 4a). Thus, the contrasting color change enables visual detection of ammonia formation during enzymatic urea hydrolysis using this paper strip test.
Additionally, the sensing studies were extended to gel-based techniques to examine their practical use.41 Unlike conventional methods that involve laborious procedures and require expensive equipment or additional energy sources, gel media offer the advantages of easy handling, cost effectiveness, and a simple experimental protocol, while providing a clear colorimetric signal visible to the naked eye. Moreover, the diffusion of the analyte over a given time can be tracked by measuring the width of the contrasting-colored band, enabling both qualitative and quantitative sensing.42,43 Probe P1 (40 μM) was mixed with 0.5 wt% agarose powder in a DMSO
:
H2O (2
:
8 v/v, 5 ml) mixture to form a gel. Afterwards, 30 μL aqueous solutions with varying equivalents of Arg and Lys (in the range of 5 eq. to 40 eq.) relative to the probe were added to different vials. Consequently, the diffusion of pink-colored bands was tracked over time. In contrast to solution phase detection, arginine exhibited a remarkable color change even at 5 equivalents, whereas lysine showed only a slight change at a higher equivalence (30–40 eq.) (Fig. S5.1 in the ESI†). The difference in stoichiometric ratios of both amino acids is attributed to this observed trend. A 1
:
1 complexation ratio with arginine allows efficient detection even in the condensed phase of the probe. In contrast, two probe molecules are necessary to bind with lysine, which is less probable in the gel form.
The gel-based sensing was further extended to urea sensing. Indeed, the pH tolerance and broad pH sensing range of probe P1 make it an ideal candidate for monitoring the decomposition of urea under enzymatic hydrolysis.44 Probe P1 and aqueous urease solution were mixed with agarose solution (20% DMSO in Milli-Q water) at 40 °C for these studies. After incubation for 5 minutes, this mixture was poured into a Petri dish for complete gelation. To a series of gels, 30 μL of each of the different solutions of urea (5 mM to 60 mM) was added at the center of each gel (for details, see the Experimental section). As urea diffuses in the gel medium, its reaction with urease produces ammonia as a product, leading to a visible pink colored band around the center. Over time, more diffusion of urea into gel caused the expansion of the pink hue (Fig. 4b). The diffusion rate of this pink zone can also be controlled by changing the urea concentration. As the urea concentration was increased, more diffusion of the pink band in the gel was observed (Fig. 4c and see Fig. S5.2 in the ESI†). Thus, the concentration-dependent diffusion of the band can be used to estimate urea in urine and soil samples.
To evaluate the feasibility of P1 for real-life applications, a commercially available urine sample was diluted 300 times with Milli-Q water before measurements. The bulk urine sample was then spiked with urea using a standard addition method and incubated with probe P1 for 5 minutes in a 20% DMSO–H2O mixture. Afterwards, 20 nM urease was added, and the sample was again incubated for 10 minutes. The procedure was repeated 3–4 times with each sample and absorption changes at the 528 nm band were used to estimate urea in the urine sample (177.3 mM, 227.5 mM and 326.7 mM) (see Fig. S5.3 in the ESI†). Recovery experiments indicated excellent recovery efficiency (98.9–100.4%) of probe P1 (see Table S5.1 in the ESI†). We also investigated urea detection in urine with agarose gel. A commercially available urine sample was spiked for the sensing experiment with different known urea concentrations. Next, these four samples were diluted 40 times with Milli-Q water and added to the centre of the agarose gel (Fig. 5b). The diffusion area was monitored visually for two hours. The diffusion area of 10 mM urea (calculated diffusion distance of 2.98 mm) was selected as a safe range for this experiment. After 60 minutes, we observed the diffusion range around the blue-dotted circle to analyze the urea concentration. In the first sample, only a light pink color was observed, indicating a very low concentration of urea (<400 mM). The second sample showed diffusion up to the safe zone (approximately 400 mM). In the third sample, a slightly higher diffusion was observed, which confirmed the excess urea above the threshold value. On the other hand, sample four exhibited high diffusion, indicating an abnormal level of urea in the urine sample (Fig. 5c, see Fig. S5.4 and Table S5.2 in the ESI†). Furthermore, probe P1 was also tested for long-term stability and reproducibility. The probe showed consistent sensing of arginine in all detection media for several days. The spectral changes corresponding to complex (P1+Arg) spontaneously returned to the initial absorption of P1 upon the addition of phosphate salt (see section S6 in the ESI†).
:
n-hexane (5
:
95) mixture as an eluent to yield the desired product. Red solid, 70% yield, M.P. 150–152 °C, 1H NMR (400 MHz, DMSO-d6): δ 14.66 (s, 1H), 8.47 (d, J = 8.3 Hz, 1H), 8.12 (d, J = 9.3 Hz, 1H), 7.92 (d, J = 3.3 Hz, 1H), 7.89 (d, J = 7.9 Hz, 1H), 7.78 (d, J = 3.3 Hz, 1H), 7.70 (t, J = 7.5 Hz, 1H), 7.55 (t, J = 7.5 Hz, 1H), 7.10 (d, J = 9.3 Hz, 1H) ppm; 13C NMR (100 MHz, DMSO-d6): δ 171.8, 163.9, 142.8, 140.7, 131.6, 129.9, 129.5, 129.1, 128.3, 126.4, 122.0, 121.3, 120.1 ppm; FT-IR (ATR, cm−1): 3080, 3072, 1615, 1483, 1405, 1298, 1234, 1184, 977; HRMS (ESI): m/z calcd for C13H10N3OS [M + H]+: 256.0544, obs.: 256.0535
:
5). The resulting mixture was refluxed for 12 h, and then cooled down to room temperature. The resulting solid precipitates were filtered off and the mother liquor was separated, dried over anhydrous Na2SO4, and evaporated under reduced pressure. The crude product 5 was purified by column chromatography using silica gel and n-hexane as an eluent and obtained as a green crystalline solid. This product 5 was used for the next step immediately without further characterization.
:
8) mixture to yield the desired product as orange needles. Orange solid, 55% yield, M.P. 180–181 °C. 1H NMR (400 MHz, CDCl3): δ 7.93–7.86 (m, 3H), 7.82 (d, J = 2.0 Hz, 1H), 7.56–7.50 (m, 3H), 7.43 (dd, J = 8.5, 2.0 Hz, 1H) ppm; 13C NMR (100 MHz, CDCl3): δ 151.2, 146.4, 138.5, 132.6, 129.5, 128.9, 127.6, 126.8, 124.9, 123.2, 110.8 ppm; FT-IR (ATR, cm−1): 3741, 2929, 2852, 1568, 1437, 1222, 1144, 1093, 824; HRMS (ESI): m/z calcd for C13H9ClN3S [M + H]+: 274.0205; obs.: 274.0212.
:
n-hexane (2
:
98) mixture as an eluent. The product was obtained as a red liquid. Red liquid, 82% yield. 1H NMR (400 MHz, CDCl3): δ 8.96 (d, J = 8.7 Hz, 1H), 8.04 (d, J = 3.1 Hz, 1H), 7.96 (d, J = 9.0 Hz, 1H), 7.81 (d, J = 8.0 Hz, 1H), 7.63 (t, J = 7.4 Hz, 1H), 7.46 (t, J = 7.4 Hz, 1H), 7.41–7.34 (m, 2H), 4.36 (q, J = 7.0 Hz, 2H), 1.54 (o, J = 7.0 Hz, 3H,) ppm; 13C NMR (100 MHz, CDCl3): δ 179.7, 152.9, 143.8, 135.5, 133.8, 129.4, 129.2, 129.0, 128.2, 125.1, 124.4, 120.7, 115.7, 66.6, 15.1 ppm; FT-IR (ATR, cm−1): 2979, 2928, 1591, 1429, 1276, 1251, 1150, 808; HRMS (ESI): m/z calcd for C15H14N3OS [M + H]+: 284.0857; obs.: 284.0851
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d5ob00077g |
| This journal is © The Royal Society of Chemistry 2025 |