Open Access Article
Niklas
Geue
*a,
Emily
Hicks
ab,
Selena J.
Lockyer
b,
Selina
Nawaz
b,
Olivia
Churchill
b,
George F. S.
Whitehead
b,
Grigore A.
Timco
b,
Neil A.
Burton
b,
Perdita E.
Barran
a and
Richard E. P.
Winpenny
*b
aMichael Barber Centre for Collaborative Mass Spectrometry, Manchester Institute of Biotechnology, Department of Chemistry, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK. E-mail: niklas.geue@manchester.ac.uk
bDepartment of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK. E-mail: richard.winpenny@manchester.ac.uk
First published on 17th February 2025
The complex [{Ni(cyclen)}2Cr12NiF18(O2CtBu)24] (where cyclen = 1,4,7,10-tetrazacyclododecane) crystallises as a fifteen-metal chain that is shaped like a seahorse. Given this is one of the longest finite, paramagnetic chains found, we were intrigued whether this unusual structure is induced during crystal growth or also maintained in other phases. We report electron paramagnetic resonance spectroscopy, small angle X-ray scattering and atomistic molecular dynamics simulations, demonstrating that the S-structure from crystal is stable in powder and solution. Using ion mobility mass spectrometry (IM-MS), we revealed the coexistence of S-shaped structures and a closed isomeric assembly in the gas phase. Collision-induced dissociation mass spectrometry studies monitored by IM-MS show the rearrangement of the cyclic seahorse to the S-shaped conformation, as well as the dissociation to a cyclic, seven-metal complex.
Polymetallic metal complexes tend to either be compact, often resembling fragments of an oxide-lattice,14,15 or cyclic.16–21 Open-chains are rare beyond very short fragments due to enthalpic reasons, and are so far underexplored despite potential applications as advanced materials. Examples include an {Fe18} chain reported by the Christou group,22 a {Cr24Cu7} chain reported by Alotaibi et al.23 and the {Cr12Ni3} seahorse chain 1 discussed herein (Fig. 1).24 In all cases the compounds crystallise as an S-shape, and while it could be argued such a shape is denser than a linear chain structure, it is possible that these structures are defined by the crystallisation process. Using EPR, SAXS, AMD and IM-MS, we study the unusual {Cr12Ni3} molecular chain 1 to understand the stability and dynamics of paramagnetic open-chain structures in non-crystalline phases.
Continuous wave (cw) EPR spectroscopy can be used to determine the overall spin ground state in 1. As 1 contains many paramagnetic metal centres, there are a very large number of spin states, with excited states occupied down to low temperatures. This restricts the usefulness of the information that can be obtained at higher temperatures. CW EPR measurements were performed using Q-Band frequencies (ca. 34 GHz) for 1 as a powder sample between 287 and 5 K (Fig. S2, ESI†). At 20 K and higher temperatures a very broad resonance is seen at g = 1.98; this is due to occupation of many spin states. Below 20 K a broad feature arises at low field (Fig. 2a for T = 5 K). Assuming nearest neighbour anti-ferromagnetic coupling dominates in this chain, as predicted by magnetic measurements,24 an S = 1 ground state would be predicted and we can simulate26 the low temperature spectra for an S = 1 with giso = 2.0, D = 0.997 cm−1 (30 GHz) and E = 0.031 cm−1 (0.930 GHz), where D and E are the axial and rhombic zero field splitting (ZFS) parameters respectively. The intense feature is due to an Δms = ±2 of an S = 1 ground state while the features at 400 and 500 mT require inclusion of rhombic ZFS. This simple model does not simulate low intense features between 600–1200 mT which are presumably due to low-lying excited states, probably S = 2. However, given the low intensity we have not attempted to simulate this state.
We were interested in whether this seahorse structure is maintained in solution, and we used SAXS in combination with AMD simulations to investigate the structure further. The experimental pair distance function (PDF) is shown in Fig. 2b, and by comparison a calculated PDF based on an AMD simulation using the crystal structure as the starting point. The agreement is remarkable, suggesting that 1 maintains its S-shaped crystal structure in solution. The distribution centred at 8 Å is due to contacts within each of the two terminal curves of S-shape, which forms a pseudo-ring (Fig. 2b). We previously observed similar peaks in all SAXS measured on compounds containing complete {Cr7Ni} rings.12,13 The distribution centred at 19 Å involves contacts from one end of the S-structure to the other. It is noticeably less intense than the one centred at 8 Å as it only involves atom-atom contacts from the extremities of the S-shaped molecule.
Advanced mass spectrometry techniques allow us to study the structure of this family of polymetallic complexes in the gas phase,8,9 as ions can be separated based on their size and shape using IM-MS. Structural information are provided in form of rotationally averaged collisional cross section (CCS) values, which can be compared to those modelled from candidate geometries. We have previously used IM-MS to distinguish the topology of closed and open polymetallic complexes of this family of polymetallic complexes, showing that their CCS in nitrogen (CCSN2) has a linear correlation with ion mass, which is not the case for acyclic compounds.6 This relationship is based on the ions’ packing densities (species with higher CCSN2 and lower mass exhibit a lower packing density), which is different to the macromolecular density of the crystal lattice.
The mass spectrum of 1 (Fig. S3, ESI†) contains the intact ion [1 + 2 Na]2+ (isotopic distribution in Fig. S4, ESI†) as the most intense peak, although intensities vary from measurement to measurement. In addition, several doubly-charged peaks were found that indicate the presence of molecules with molecular weights >5000 Da, i.e. ions that are larger than 1. Assignment for two ions were suggested that correspond to stoichiometries of {Cr18Ni3} and {Cr19Ni4}, and we propose that these small peaks can be interpreted as due to additional {CrxNiy} chains added to the parent seahorse 1, which is {Cr12Ni3} (Fig. S3, ESI†). Such longer chains are plausible species, and would indicate formation of chains with further loops, i.e. for {Cr19Ni4} with four nickel sites linked by three chromium chains rather than three nickel sites linked by two chromium chains. We have recently reported an example of such a species with CuII rather than NiII, where a {Cr24Cu7} chain forms in which the CuII sites are linked by six chromium chains, two each of {Cr3}, {Cr4} and {Cr5} chains.27 Therefore, we believe what we observe here by MS are new {CrxNiy} chains which we are presently unable to isolate. The MS data show the richness of the chemical system, and this richness is itself a challenge for separation and crystallisation of the proposed {CrxNiy} chains.
IM-MS data of [1 + 2 Na]2+ revealed three conformations at CCSN2 values of 645 Å2, 666 Å2 and 681 Å2 (Fig. 3 top), respectively, with the main peak at 666 Å2, although the intensities of the different conformations vary from measurement to measurement. Based on the relationship discussed above, the two larger conformations of [1 + 2 Na]2+ exhibit an acyclic geometry with a lower packing density than polymetallic rings, as shown in Fig. 4, and hence most likely retain versions of the S-shaped conformation. Conversely, the smaller conformation at CCSN2 = 645 Å2 agrees well with the linear trend of closed assemblies from our previous work,6 which suggests the rearrangement of the seahorse structure to a closed topology in the gas phase. To confirm the S-shaped identity of [1 + 2 Na]2+, we modelled the theoretical THCCSN2 of the seahorse crystal structure using the trajectory method of IMoS (THCCSN2 = 731 Å2).28 This yielded good agreement with the experimental value of the larger conformation, in accordance with a previously observed and discussed discrepancy.4 Overall, the IM-MS data supports the co-existence of polymetallic, finite chains 1 and a closed assembly of 1in vacuo.
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| Fig. 3 Collision cross section distributions of [1 + 2 Na]2+ (top) and [2 + 2 Na]+ (bottom). The data were fitted with five (top) and two Gaussian peaks (bottom, overlapping with highly similar CCSN2). For the distribution of [1 + 2 Na]2+, data was processed so that two peaks at lower CCSN2 were erased as they corresponded to co-existing ions in the mass spectrum for some isotopic peaks, leaving three distinguishable CCSN2 distributions. Inset: Suggested structures as schematics. The rearranged, cyclic schematics are presented with thick bonds as the exact connectivity and bridging situation is unclear.6 | ||
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| Fig. 4 Correlation between CCSN2 and adjusted mass based on our previous work, indicating a linear relationship for closed species (black squares).6 The seahorse ion [1 + 2 Na]2+ exhibits three conformations, two above the linear relationship for cyclic species and one on the line. This suggests differences in packing density and the coexistence of an S-shaped structure as well as a closed assembly. The fragment [2 + 2 Na]+ agrees with the linear relationship, and occurs most likely as a closed ring. Insets: Suggested structures of [1 + 2 Na]2+ and [2 + 2 Na]+. The rearranged, cyclic structures are presented with schematics based on thick bonds as the exact connectivity and bridging situation is unclear.6 | ||
It is further possible to study the dynamics of gas phase ions using collision-induced dissociation mass spectrometry (CID-MS), which often induces structural change or dissociation, and this process can in turn be monitored by IM. Our previous studies showed that collisional activation of closed polymetallic structures, such as Cr7M rings (with M = MnII, FeII, CoII, NiII, CuII, ZnII and CdII), CrxCu2 hourglasses (x = 10, 12) and a Cr12Gd4 cluster, leads to dissociation involving the loss of metal centres, and subsequent rearrangement to smaller polymetallic rings.4,6 For the collisional activation of [1 + 2 Na]2+, we observe fragmentation via many different pathways, with the dominant one involving perturbation to the species [Cr6NiF9Piv12 + 2 Na]+ = [2 + 2 Na]+ (Fig. S5, ESI†). We probed the structure of this fragment (Fig. S6 for isotopic distribution, ESI†) using ion mobility, yielding CCSN2 = 382 Å2 (Fig. 3 bottom). As shown in Fig. 4 and discussed above, [2 + 2 Na]+ exhibits the packing density of a closed topology. Hence, after a {Cr6Ni2} unit departs, the structure rearranges on the experimental millisecond timescale to a closed, cyclic species (Fig. 5). While we have previously observed this disassembly mechanism for cyclic precursor ions,4,6 this is the first time that CID-MS induces cyclisation for an open chain of this compound family. Using the cyclic IMS instrument, we were also able to m/z- and ion mobility select the three conformations of [1 + 2 Na]2+ and monitor changes in the conformational landscape when exposed to gas collisions. We found that collisional activation leads to a rearrangement of the closed species to the S-shaped molecule, in particular to the S-shaped isomer at lower CCSN2 (Fig. S7 and Fig. 5, ESI†). It is plausible that this isomer is an unfolding intermediate from the cyclic [1 + 2 Na]2+ to the most extended S-shaped isomer at higher CCSN2, which have different conformations due to the presence or absence of stabilising intramolecular interactions between the loops of the “S”.
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| Fig. 5 Schematic of how the S-shaped seahorse crystal structure is preserved in powder and solution, predominantly rearranged to a closed structure in the gas phase, rearranged to the S-shaped structure upon collisional activation and finally fragmented to a cyclised seven-metal ring. The rearranged, cyclic structures are presented with schematics based on thick bonds as the exact connectivity and bridging situation is unclear.6 | ||
000 seconds. All experimental data are the sum of the 2D radial distribution of the small angle X-ray diffraction converted to a 1D line graph. Irena SAS/SANS routines in Wavemetrics Igor Pro have been used for calibration,34 data conversion and subsequent analysis.
The analysis involved subtracting the solvent contribution from the sample and solvent data before employing routines in Irena for the analysis. Pair distance distribution functions provided a reliable, simple and reproducible means for investigating the molecular sizes. The corrected data was analysed using the Moores method.34 Initially, the approximate size is determined and then function fitted to a region between large aggregate signals (small angles) and the statistically insignificant data at high angles. Fitting was repeated until a steady maximum size was achieved.
SAXS data was calculated on the initial crystal structure set up for AMD simulation to be compared directly to experiments. Scattering factors were taken from computed X-ray scattering factors derived from Hartree–Fock calculations.38 The SAXS box used for all calculated profiles was 100 nm with the X-ray wavelength of 0.154209 nm. SAXS calculations were performed on the whole structure to compare to the SAXS measured experimentally. Irena SAS routines in Igor Pro34 has been used to calculate the pair distribution function from the SAXS data obtained from Gromacs. The pair distribution function enables us to investigate and compare the molecular size to experimental data (Fig. 2). Moores method34 was used to approximate the size and then fitted to a function in the region of large aggregate signals (small angles); and the statistically insignificant data at high angles.
Spectral simulations were performed using the EasySpin 6.0.0 software26 with a spin Hamilton for 1 incorporating the individual g-matrice and zero field splitting interaction at 5 K:
| Ĥ = μBŜ·g·B + ŜDŜ |
:
1 toluene/methanol at a final analyte concentration of 200 μM in 500 μM NaI. The sample was ionised and transferred to the gas phase with a nESI source and sprayed from borosilicate glass capillaries (World Precision Instruments, Stevenage, UK). The latter were pulled on the Flaming/Brown P-2000 laser puller (Sutter Instrument Company, Novato, CA, US). The capillary voltage (typically 1.0–1.8 kV) was applied through a platinum wire (Diameter 0.125 mm, Goodfellow, Huntingdon, UK) inserted into the nESI capillaries. The source temperature was kept to 30 °C.
Ion mobility mass spectrometry (IM-MS) experiments were performed on a Select Series Cyclic IMS,39 and some mass spectra not involving ion mobility were acquired on a Q Exactive Ultra-High-Mass-Range (UHMR) Hybrid Quadrupole-Orbitrap Mass Spectrometer (Thermo Fisher).40 For IM-MS, following ionization (cone voltage: 20 V, source offset: 10 V), ions were transferred to the trap and activated via collisions with nitrogen gas, if appropriate (trap voltage: 0–200 V, gas flow: 5 mL min−1). Ions are further injected to the cyclic ion mobility drift ring (Stepwave Ion Guide RF: 200 V) and separated by using a non-uniform electric field under a constant nitrogen pressure with travelling waves (TW, height: 22 V, gas flow: 40 mL min−1), pushing the ions through the drift ring. Ions travelled one pass in the cyclic drift ring (“single path”, separation time: 2 ms) and were then transferred (transfer voltage: 15 V) to a time-of-flight mass analyser.
Experimentally obtained arrival times were converted to collisional cross sections (TWCCSN2, TW: ‘Travelling Waves’) via published calibration procedures.41 The Agilent tune mix was used as a calibrant.42
Theoretical collision cross section values in nitrogen (THCCSN2, TH: ‘Theoretical’) were calculated from the software IMoS by using the trajectory method in nitrogen gas including quadrupole potential (number of orientations: 3, gas molecules per orientation: 300
000, temperature: 298 K, pressure: 101
325 Pa = 1 atm).28
Footnote |
| † Electronic supplementary information (ESI) available. CCDC 2402139. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d4cp04498c |
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