Jupally
Prashanth
ab,
A.
Sivalakshmi Devi
c,
Artem O.
Surov
*d,
Alexander P.
Voronin
d,
Andrei V.
Churakov
e,
German L.
Perlovich
d and
Sridhar
Balasubramanian
*ab
aCentre for X-ray Crystallography, Department of Analytical & Structural Chemistry, CSIR-Indian Institute of Chemical Technology, Tarnaka, Uppal Road, Hyderabad-500007, Telangana, India. E-mail: bsridhar@iict.res.in
bAcademy of Scientific and Innovative Research (AcSIR), Uttar Pradesh-201 002, India
cLaurus Labs Ltd., DS-1, IKP Knowledge Park, Turkapally, Shameerpet, Hyderabad-500078, India
dG.A. Krestov Institute of Solution Chemistry RAS, 153045, Ivanovo, Russia
eInstitute of General and Inorganic Chemistry RAS, Leninsky Prosp. 31, 119991, Moscow, Russia
First published on 31st March 2022
Apalutamide (APA) is a nonsteroidal antiandrogen (NSAA) drug used for prostate cancer treatment. The crystal structures of apalutamide–dimethylformamide (2
:
1 & 1
:
1), apalutamide–1,4-dioxane, apalutamide–N,N-dimethylacetamide, apalutamide–cyclohexanone, apalutamide–acetonitrile, apalutamide–acetone, apalutamide–2-butanol and apalutamide–ethanol were determined. Thermal analysis and lattice energy calculations were performed to understand the stability of the solvent molecules in the crystal structures. Characteristic amide catemer hydrogen bonding was observed in all structures except in the structure of the acetonitrile solvate, in which the amide N–H atom was bonded to the solvent molecule. In all the structures APA⋯APA and APA⋯solvent interactions were used to build a supramolecular hydrogen-bonded network in the crystal packing. The solvent molecules were involved in strong interactions with APA molecules and were seen to stabilize the crystal structures. Crystal packing similarity analysis revealed that the APA solvates show modest structural resemblance.
The growth in importance of pharmaceutical solvates has been recently highlighted in several Cambridge Structural Database (CSD22) surveys that sought to establish both structural and thermodynamic relationships that determine the likelihood of solvate formation.23–26 It has been generally accepted that the following two factors are mainly responsible for the solvent incorporation in the crystal lattice of organic compounds:27–29 (i) the introduction of the solvent molecules is likely to compensate for unsatisfactory intermolecular interactions of the host molecules and contribute to stronger intermolecular interaction; (ii) solvate formation is expected to reduce an excess void space providing more dense and efficient packing arrangements. In most cases, both these aspects contribute to the driving force of the process, decreasing the free energy of the resulting multicomponent system. A more quantitative approach towards solvate formation propensity has been developed by Cruz-Cabeza et al., who introduced a concept of the entropy cost that a system must spend to accommodate a liquid component in a crystalline environment.26 It has been shown that the occurrence of solvates in the CSD is inversely proportional to the calculated value of the entropy penalty, indicating that the formation of solvates associated with a high entropy penalty would require a larger lattice energy gain. This approach was further explored in the subsequent theoretical study by Iuzzolino,23 who showed that 79.5% of the solvates are thermodynamically more stable than their single-component constituents, while 20.5% of the solvates represent metastable systems and are likely to be kinetically favored.
The present study aims at constructing the solvent landscape for a novel and little-studied antiandrogenic compound apalutamide (APA)30,31 (Fig. 1). It has been reported that the aqueous solubility of APA in pharmaceutically relevant media does not exceed 8 × 10−6 mol l−1,32 and, according to the biopharmaceutical classification system (BCS), the drug belongs to class II of the BCS with low aqueous solubility and high membrane permeability.33 The solid-state landscape of the drug, however, is barely investigated. Even though several patents have claimed the existence of a range of APA solvates and two polymorphic forms of the compound, only a limited amount of structural information and a scarce description of the thermal properties of these solid forms are available.34–36 We have to note that in the course of drafting this manuscript, crystal structures of non-solvated APA (Form B; CSD Refcode: FAVYEK) and its cocrystal with methylparaben (CSD Ref code: FAVYAG) have been published, providing the first instance of crystallographic data in the academic literature as well as the CSD.37 The lack of structural information on this drug prompted us to undertake a comprehensive screening for different polymorphic modifications and solvates of APA to extend currently known set of the drug's solid forms and to gain deeper knowledge of its structural chemistry. In this work, anhydrous form of apalutamide (APA) and nine solvates namely, apalutamide–dimethylformamide (APA–DMF 2
:
1 & 1
:
1), apalutamide–1,4-dioxane (APA–DOX), apalutamide–N,N-dimethylacetamide (APA–DMA), apalutamide–cyclohexanone (APA–CYH), apalutamide–acetonitrile (APA–ACN), apalutamide–acetone (APA–ACE), apalutamide–2-butanol (APA–BUT) and apalutamide–ethanol (APA–EtOH) were obtained and characterized by single-crystal X-ray diffraction (SCXRD) and other analytical techniques, including hot-stage microscopy (HSM), differential scanning calorimetry (DSC) and thermogravimetric analysis (TG). A detailed investigation of molecular conformations, crystal packing and structure of the void framework enabled us to obtain valuable insights into structure-dependent stability and propose desolvation pathways of the solvates. In addition, the packing similarity and the intermolecular energies were calculated to rationalize the role of solvent molecules in packing arrangements and to elucidate the difference in thermal stability of the solid forms.
![]() | ||
| Fig. 1 Molecular structure of apalutamide. Arrows indicate the most flexible torsion angles τ1 and τ2. | ||
:
1 (APA–DMF-2
:
1).
APA (20 mg) was dissolved in 0.5 ml of DMF which was heated at 90 °C to obtain a clear solution. It was left for slow evaporation at room temperature covered with parafilm. Crystals formed after one month.
:
1 (APA–DMF-1
:
1).
APA (20 mg) was dissolved in 0.5 ml of DMF under hot conditions at 90 °C and left for slow evaporation at room temperature without parafilm cover. Crystals formed within 4 days.
:
1 (APA–DOX-2
:
1).
20 mg of APA was placed in a small sample vial and the compound was dissolved using 0.5 ml of 1,4-dioxane. This small sample vial containing the 1,4-dioxane solution of the compound was carefully placed in a larger weighing bottle containing 3 ml of hexane and closed with a lid. Crystallization progressed by vapor diffusion of hexane into 1,4-dioxane solution. Crystals were obtained after 7 days.
:
1 (APA–DMA-1
:
1).
20 mg of APA was placed in a small sample vial and the compound was dissolved using 0.4 ml of N,N-DMA. This small sample vial containing the N,N-DMA solution of the compound was carefully placed in a larger weighing bottle containing 4 ml of cyclohexane and closed with a lid. Crystallization progressed by vapor diffusion of cyclohexane into N,N-DMA solution. Crystals were obtained after 7 days.
:
1 (APA–CYH-1
:
1).
APA (50 mg) was dissolved in 2 ml of cyclohexanone under hot conditions at 90 °C to obtain a clear solution and left for slow evaporation under ambient conditions. Crystals were formed within 7 days.
:
1 (APA–ACN-1
:
1).
Apalutamide (50 mg) was dissolved in acetonitrile (0.5 ml) and then 2 ml of Millipore water (antisolvent) was added dropwise. A fine white precipitate started forming which was then stirred for 2 h at room temperature and later dissolved in 1 ml of acetonitrile. This solution was allowed to stand for slow evaporation at room temperature. Crystals were formed within 2 days.
:
1 (APA–ACE-2
:
1).
100 mg of APA was placed in a small sample vial and the compound was dissolved using 1 ml of acetone. This small sample vial containing the acetone solution of the compound was carefully placed in a larger weighing bottle containing 10 ml of diethyl ether and closed with a lid. Crystallization progressed by vapor diffusion of diethyl ether into the acetone solution. Crystals were obtained in a week.
:
0.5 (APA–BUT-1
:
0.5).
APA (20 mg) was dissolved in 2 ml of 2-butanol which was heated at 90 °C to obtain a clear solution and left for slow evaporation under ambient conditions. Crystals were formed within 7 days.
:
1 (APA–EtOH-2
:
1).
20 mg of APA was placed in a small sample vial and the compound was dissolved using 5 ml of ethanol. This small sample vial containing the ethanol solution of the compound was carefully placed in a larger weighing bottle containing 2 ml of n-pentane and closed with a lid. Crystallization progressed by vapor diffusion of n-pentane into the ethanol solution. Crystals were obtained in 7 days.
:
1 (at 100 K), and APA–DMF-2
:
1 (at 150 K) were collected on a SMART APEX II diffractometer as well as for APA–DMF-1
:
1 (at 100 K) on a Bruker D8 Venture machine (Bruker AXS, Germany) with graphite-monochromated Mo-Kα radiation (λ = 0.71073 Å) at the Centre of Shared Equipment of IGIC RAS. Absorption corrections based on measuring equivalent reflections were applied.38 The X-ray diffraction data for APA–DMF-2
:
1, APA–DOX-2
:
1, APA–DMA-1
:
1, APA–CHY-1
:
1, APA–BUT-1
:
0.5 and APA–EtOH-2
:
1 were collected at 100 K at the Center for X-ray Crystallography, CSIR-Indian Institute of Chemical Technology, Hyderabad on a Bruker D8 QUEST instrument with an IμS Mo microsource (λ = 0.7107 Å) and a PHOTON-100 detector for all structures except APA–DOX and APA–DMA, which were collected at room temperature (294(2) K). These crystals were first attempted at low temperature, while the data quality was not good. Later, data were collected at room temperature for the same crystals. The raw data frames were reduced and corrected for absorption effects using the Bruker Apex 3 software suite programs39 The structure was solved using an intrinsic phasing method40 and further refined with the SHELXL41 program and expanded using Fourier techniques.
The structures were solved by direct methods and refined by full matrix least-squares on F2 with anisotropic thermal parameters for all the non-hydrogen atoms.42 Out of nine structures, APA–ACN has no disorder. For the rest of the structures, either APA or solvate or both were disordered, which is described in the ESI.† All amino hydrogen atoms were located from difference Fourier maps and their positional parameters were freely refined. The hydrogen atom attached to the oxygen atom of the 2-butanol solvate was located in the difference density map and its position and isotropic displacement parameters were refined. The hydrogen atom attached to the O atom of the ethanol solvate was located in difference density maps, but was positioned geometrically and included as a riding atom with O–H = 0.82 Å and Uiso(H) = 1.5Ueq(O). C-bound H atoms were located in difference density maps but were positioned geometrically and included as riding atoms with C–H = 0.93–0.98 Å, and Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for all other H atoms. Hydrogen bonding details are given in Tables S2–S11.† The ORTEP diagrams were drawn using DIAMOND software,43 and both molecular overlay and packing diagrams were depicted using MERCURY software.44
Detailed crystallographic and refinement data are listed in Table S1.† The crystallographic data were deposited with the Cambridge Crystallographic Data Centre as supplementary publications under the CCDC numbers 2151550–2151553 for APA, APA–ACE-2
:
1, APA–DMF-2
:
1, APA–DMF-1
:
1 and 2152151–2152157 for APA–DMF-2
:
1, APA–DOX-2
:
1, APA–DMA-1
:
1, APA–CHY-1
:
1, APA–BUT-1
:
0.5, APA–ACN-1
:
1, APA–EtOH-2
:
1.
The crystal lattice energy (Elatt) of an n-component crystal was estimated as the difference between the sum of the total electronic energies of isolated molecules in their relaxed conformations Emol and the total energy of the optimized crystal Ecryst calculated per asymmetric unit with respect to basis set superposition error (BSSE):53
![]() | (1) |
![]() | (2) |
| Estab = Elatt − Ebind | (3) |
Quantum topology analysis of non-covalent interactions in considered solvates was performed in Topond software55 currently implemented into the CRYSTAL suit. The search for (3, −1) critical points was performed using a standard algorithm, and the following quantities were computed in the critical point: electron density, ρb, its Laplacian, ∇2ρb, and the positively defined local electronic kinetic energy Gb. The interaction energy of a particular hydrogen bond, Eint, was estimated using the correlation equation proposed by Mata et al.:56
| Eint (kJ mol−1) = 1124Gb (atomic units) | (4) |
:
1 (APA–DMF-2
:
1).
The APA–DMF-2
:
1 solvate structure crystallizes in the triclinic P
space group with four molecules of apalutamide molecules (suffix with labels A–D) and two DMF solvates (suffix with labels A and B) in the asymmetric unit (Fig. 3). APA molecule A links the adjacent molecule B through the N5A–H5NA⋯O2B hydrogen bond. The APA molecule B interacts with adjacent molecule B via C18B–H18D⋯O3B and APA molecule D through N5B–H5NB⋯O2D and C16B–H16B⋯S1D interactions along with the C17B–H17D⋯F3A (−x + 1, −y + 1, −z) interaction with symmetry-related APA molecule A. The molecule C links the adjacent molecule A via N5C–H5NC⋯O2A hydrogen bonds and symmetry-related molecule B through the C21C–H21I⋯S1B (−x, −y, −z + 1) interaction. The molecule D connects the trans-related molecule C through the N5D–H5ND⋯O2C (x, y + 1, z) hydrogen bond. The APA molecules A and D also interlink the DMF solvates A and B through C2A–H2A⋯O3A and C2D–H2D⋯O3B interactions. The DMF molecule A links APA molecule A through the C24A–H24B⋯N4A (x − 1, y + 1, z) hydrogen bond. The N–H⋯O hydrogen bonds interlink the four APA molecules and aggregate them into an infinite one-dimensional chain along the b-axis. In the crystal packing, the four apalutamide molecules are arranged like a column. In the column, the first row is accommodated by the pairs of inversion-related APA molecules D, while the second row is filled by trans-related APA molecules C and D. The third row has pairs of inversion-related APA molecules A. These rows are arranged alternately along the b-axis. The APA molecules in the row and its adjacent row were interlinked by N–H⋯O, C–H⋯F and C–H⋯S interactions, which leads to the formation of a two-dimensional hydrogen bonded network. The inversion-related DMF solvates crosslink the 2D network with the adjacent network through C–H⋯O and C–H⋯N interactions thereby generating a three-dimensional network of hydrogen bonds (Fig. 5a).
:
1 (APA–DMF-1
:
1).
The APA–DMF-1
:
1 solvate structure crystallizes in the orthorhombic Pca21 space group with four molecules of apalutamide (suffix with labels A–D) and four molecules of DMF solvates (suffix with labels A–D) in the asymmetric unit (Fig. S1†). Both molecules A and B are interlinked with each other through N–H⋯O hydrogen bonds (N5A–H5NA⋯O2B and N5B–H5NB⋯O2A (x − 1/2, −y + 2, z)) and form an infinite chain along the a-axis. Similarly, molecules C and D are interlinked with each other via N–H⋯O hydrogen bonds (N5C– H5NC⋯O2D and N5D–H5ND⋯O2C (x + 1/2, −y + 1, z)) and form an infinite chain along the a-axis. The APA molecules D and C are further interlinked by C19D–H19H⋯F2C (1/2 + x, 2 − y, z) hydrogen bonds. The APA molecule A connects the DMF molecule A through the C5A–H5A⋯O3A hydrogen bond, in turn, the DMF molecule A links APA molecule B through the C23A–H23A⋯N4B (1/2 + x, 1 − y, z) hydrogen bond. The APA molecule B connects the DMF molecule D through C2B–H2B⋯O3D, while DMF molecule D links the APA molecules A and B via C24D–H24J⋯N4A (x, 1 + y, z) and C23D–H23J⋯O1B hydrogen bonds. The APA molecule C links the DMF molecule B by C5C–H5C⋯O3B, and DMF molecule B connects the APA molecule C by C24B–H24F⋯O1C hydrogen bonds. The APA molecule D links the DMF molecule C through the C2D–H2D⋯O3C hydrogen bond, while DMF molecule C links the APA molecule D by the C24C–H24H⋯O1D hydrogen bond. The APA molecules A and B are arranged alternately in the infinite chains which are further interconnected by DMF molecules A and D. The combination of N–H⋯O, C–H⋯O and C–H⋯N interactions generates a two-dimensional hydrogen-bonded network. In the crystal, the four APA molecules form two sets of columns. The first set of the column is accommodated by an alternate arrangement of APA molecules C and D, which are further interlinked by DMF solvates B and C. Meanwhile the second column is filled by APA molecules A and B alternately and further interlinked by DMF solvates A and D, respectively (Fig. 5b).
:
1 (APA–DOX-2
:
1).
The APA–DOX-2
:
1 structure crystallizes in the monoclinic C2/c space group with two molecules of APA (suffix with labels A and B) and one molecule of the DOX solvate in the asymmetric unit (Fig. 4). The amide N–H⋯O hydrogen bonds (N5A–H5NA⋯O2B (x, −y + 2, z − 1/2) and N5B–H5NB⋯O2A) link the APA molecules A and B and form an infinite one-dimensional chain along the c-axis. The APA molecule A connects the two symmetry-related APA molecules B by C5A–H5A⋯S1B (x, −y + 1, z − 1/2) and C15A–H15A⋯S1B (3/2 − x, 3/2 − y, 1 − z), while the APA molecule B links the neighbor APA molecule A by the C5B–H5B⋯S1A hydrogen bond. These N–H⋯O and C–H⋯S interactions aggregate the APA molecules into a two-dimensional hydrogen-bonded network. In the crystal, the inversion-related APA molecules A and B are arranged alternately and form a column, which is interlinked with adjacent columns by the above-mentioned N–H⋯O and C–H⋯S interactions thereby forming a 2D network. The DOX solvate links the APA molecules A and B via C2A–H2A⋯O3 (x, y + 1, z) and C22–H22A⋯N4B interactions and generate a three-dimensional hydrogen-bonded network (Fig. 6a).
![]() | ||
Fig. 4 Asymmetric units of the APA–DOX-2 : 1 and APA–ACE-2 : 1 solvates. Displacement ellipsoids are drawn at the 30% probability level. Hydrogen bonds are shown as dashed lines. | ||
:
1 (APA–DMA-1
:
1).
The APA–DMA-1
:
1 structure crystallizes in the monoclinic P21/c space group with two molecules each of APA (suffix with labels A and B) and DMA (suffix with labels A and B) in the asymmetric unit (Fig. 3). The APA molecules A and B are interlinked by amide N–H⋯O hydrogen bonds (N5A–H5NA⋯O2B (x, −y + 3/2, z − 1/2) and N5B–H5NB⋯O2A) which aggregate them into an infinite one-dimensional chain along the c-axis. Further, the APA molecules A and B are connected by the C5A–H5A⋯S1B (x, 5/2 − y, −1/2 + z) interaction. These N–H⋯O and C–H⋯S interactions lead to the formation of a two-dimensional hydrogen-bonded network. The APA molecule A connects the DMA solvate A through C2A–H2A⋯O3A while APA molecule B connects the DMA solvate B through C5B–H5B⋯O3B. The DMA solvate B links the symmetry-related APA molecule A through the C23B–H23H⋯N4A (x, 5/2 − y, 1/2 + z) interaction. The combination of N–H⋯O, C–H⋯S, C–H⋯O and C–H⋯N interactions aggregates the molecules into a two-dimensional hydrogen-bonded network. In the crystal, the APA molecules are arranged alternately as a row, and each row is interlinked with the adjacent row through APA⋯APA and APA⋯DMA interactions (Fig. 6b).
:
1 (APA–CYH-1
:
1).
The APA–CYH-1
:
1 structure crystallizes in the monoclinic P21/c space group with two molecules each of APA (suffix with labels A and B) and cyclohexanone solvates (suffix with labels A and B) in the asymmetric unit (Fig. 3). The amide N–H⋯O hydrogen bonds (N5A–H5N⋯O2B and N5B–H2N⋯O2A (x, −y + 3/2, z + 1/2)) link the APA molecules A and B into an infinite one-dimensional chain along the c-axis. The APA molecule A connects its symmetry-related molecule A (x, 3/2 − y, 1/2 + z) through the C19A–H19A⋯F4A hydrogen bond. The APA molecule B interlinks its symmetry-related APA molecule B via the C21B–H21E⋯S1B (x + 1, y + 1/2, −z + 3/2) hydrogen bond. The APA molecule A links the CYH solvate B via C2A–H2A⋯O3B, while APA molecule B connects the CYH solvate A through C5B–H5B⋯O3A and symmetry-related CYH solvate B by C17B–H17C⋯O3B (x, 3/2 − y, 1/2 + z) hydrogen bonds. The CYH solvate B connects APA molecule A by the C23B–H23C⋯O1A hydrogen bond. In the crystal packing, APA molecules A & B and CYH solvates A & B are arranged alternately as a row. Each row is interlinked with its adjacent rows through APA⋯APA and APA⋯CYH interactions and generates a two-dimensional hydrogen-bonded network (Fig. 6c).
:
1 (APA–ACN-1
:
1).
The APA–ACN-1
:
1 structure crystallized in the orthorhombic Pna21 space group with one molecule of APA and one molecule of the ACN solvate in the asymmetric unit (Fig. 3). The amide N5 atom of APA links the ACN solvate through the N5–H5N⋯N6 hydrogen bond. The APA molecule links its symmetry-related molecule through C2–H2⋯O2 (1 − x, 1 − y, 1/2 + z) and C15–H15⋯O1 (1 − x, 1 − y, −1/2 + z) hydrogen bonds and forms a dimer. The C12–H12⋯S1 (−1/2 + x, 1/2 − y, z) and C18–H18A⋯N4 (1/2 − x, 1/2 + y, −1/2 + z) hydrogen bonds interlink the dimeric units. In the crystal packing, the combination of these interactions aggregates the molecules into a two-dimensional hydrogen-bonded network. It is interesting to note that the amide hydrogen bonding between the APA molecules is absent in the present structure (Fig. 6d).
:
1 (APA–ACE-2
:
1).
The APA–ACE-2
:
1 structure crystallized in the monoclinic C2/c space group, with two molecules of APA (suffix with labels A and B) and one molecule of the ACE solvate in the asymmetric unit (Fig. 4). Both the APA molecules A and B are interlinked by amide N–H⋯O hydrogen bonds (N5A–H5NA⋯O2B (x, −y + 3, z − 1/2) and N5B–H5NB⋯O2A) forming an infinite chain along the c-axis. The APA molecule A interacts with the two symmetry-related APA molecule B through C5A–H5A⋯S1B (x, −y + 2, z − 1/2) and C21A–H21C⋯S1B (−x + 1/2, −y + 5/2, −z + 1) hydrogen bonds. The APA molecule A further links the ACE solvate through C2A–H2A⋯O3 and in turn the ACE solvate links the APA molecule B via C23–H23B⋯N4B (x, y + 1, z) hydrogen bonds. In the crystal structure, the APA molecules A and B are arranged alternately as rows. Each row is interlinked with the adjacent rows by APA⋯APA and APA⋯ACE interactions and constructs a two-dimensional hydrogen-bonded network (Fig. 7a).
:
0.5 (APA–BUT-1
:
0.5).
The APA–BUT structure crystallized in the monoclinic P21/c space group, with one molecule of APA and half a molecule of the BUT solvate in the asymmetric unit (Fig. 3). The 2-butanol solvate is sitting on the two-fold symmetry. The amide N5–H5N⋯O2 (x, −y + 5/2, z + 1/2) links the symmetry-related APA molecule into an infinite one-dimensional chain along the c-axis. The APA chain is further interlinked with its adjacent chain by the BUT solvate through O3–H3O⋯O2, C24–H24A⋯O2 (−x, 2 − y, −z) and C24–H24B⋯F4 (x, y, −1 + z) hydrogen bonds. These hydrogen bonds aggregate the APA and BUT solvate molecules into a two-dimensional hydrogen-bonded network (Fig. 7b).
:
1 (APA–EtOH-2
:
1).
The APA–EtOH structure crystallized in the orthorhombic P21212 space group, with two APA molecules (suffix with labels A and B) and two half ethanol molecules (suffix with labels A and B) in the asymmetric unit (Fig. 3). One-half of the ethanol molecule is disordered over two-fold and refined with 0.5 occupancies, while the second half ethanol molecule is four-fold disordered and also refined with 0.5 occupancies. The APA molecules A and B are interlinked by the amide N5A–H5NA⋯O2B hydrogen bond. The APA molecule A is linked to its inversion-related (1 − x, 1 − y, z) molecule through C15A–H15A⋯O2A and form a dimer. Meanwhile APA molecule B forms C19B–H19C⋯F2A (1/2 + x, 1/2 − y, 2 − z) with APA molecule A. Thus APA molecule B bridges the APA A dimer unit with its adjacent unit. The EtOH solvate A links the APA molecule A through C22A–H22A⋯O2A (1 − x, 1 − y, z), while EtOH solvate B does not participate in the hydrogen bonding interaction (Fig. 7c).
APA–DMF-1
:
1, APA–DMA-1
:
1, APA–CYH-1
:
1 and APA–ACN-1
:
1 structures have an equal number of APA and solvate molecules, while in APA–DMF-2
:
1, APA–DOX-2
:
1, APA–ACE-2
:
1, APA–EtOH-2
:
1 and APA–BUT-1
:
0.5, the numbers of APA molecules are more than those of the solvate molecules in the asymmetric unit. The amide catemer interaction is observed in all the APA–solvate structures except in the APA–ACN structure. In the APA–ACN crystal, the amide N–H atom interacts with the ACN molecule. In all nine solvated structures, APA⋯APA interactions are observed in the crystal packing. In DOX, DMA, CYH, ACE and BUT structures, the solvent molecules play an active role and are involved in various intermolecular interactions with the host molecule, thereby stabilizing the crystal packing. ACN and EtOH molecules are bonded to the APA molecules and did not play any linking role in the crystal packing.
The 2D heat map of the conformation energy has four distinct potential energy basins (shown as blue areas) separated by barriers at τ1, τ2 = 0/180°. Such a profile can be explained as follows: the coplanar orientation of rings leads to destabilization of close H–H contacts58 associated with the total energy increase by 22–36 kJ mol−1, with all three rings being coplanar resulting in a conformational penalty up to 65 kJ mol−1. The barrier height between the basins varies within 15–30 kJ mol−1. Within each potential basin, two local minima corresponding to the gauche orientation of the pyridine ring with respect to the central imidazole fragment can be observed. The stabilization of the structures with τ2 close to ±60/±120° can be attributed to intramolecular C–H⋯π contacts59 between the C–H groups of the cyclobutylidene fragment and the π-system of the phenyl ring that is observed during the QTAIMC analysis. The barrier between two local minima within the basin does not exceed 5 kJ mol−1, which is comparable with the thermal energy at RT. Hence, the τ1 value in the isolated APA molecules may vary within ±50°⋯±130°.
The distribution of experimental molecular structures on the heat map is uneven and reflects the depth of a particular potential energy basin. The lowest-energy basin in the upper right part of the graph (τ1 > 0, τ2 > 0) contains 9 individual molecules from the crystal structures of APA and the solvates, while the highest-energy basin (τ1 > 0, τ2 < 0) has only two. Considering the distribution of molecular conformations from the same crystal on the potential energy map, some trends can be deduced. In four out of six crystal structures with two APA molecules in the asymmetric unit, including parent APA, solvates with acetone, ethanol and DMA, the independent molecules have similar τ2 values and opposite signs of τ1. In contrast, two symmetry-independent APA molecules in the solvate with DOX have similar conformations and fall into the same basin. In the APA–DMF-1
:
1 solvate, all four APA molecules in the asymmetric unit belong to different basins, while in APA–DMF-2
:
1, two molecules out of four belong to the lowest-energy basin. APA–ACN-1
:
1 is the only crystal where the asymmetric unit contains one independent APA molecule, and no positional disorder was observed. The τ1 value close to −60° in the APA molecule from APA–ACN is uncommon for the molecules of the same basin, which possibly reflects the distinct packing of this solvate. Some of the molecules (3A, 7A and 4B in Fig. 8) are located between the local minima within the basin, indicating the relatively low energy barrier height also in a solid state.
Interestingly, the closest similarity in terms of the APA packing was observed for the APA–DMF-2
:
1, APA–CYH-1
:
1 and APA–DMF-1
:
1 solvates that have different space group systems and API-to-solvent ratios. These three solvates contain the same principal substructure of the APA molecules, which adopt a common arrangement along two crystallographic axes (Fig. S2,† exemplified by APA–CYH-1
:
1). The APA–ACE-2
:
1 and APA–DOX-2
:
1 solvates are another pair of structures sharing the same space group (C2/c) and exhibiting a high degree of similarity. In contrast to the DMF and CYH solvates, where crests and troughs of the adjacent zigzag layers of APA are aligned, in APA–ACE-2
:
1 and APA–DOX-2
:
1, the neighboring layers of APA are shifted relative to each other by half of the “wavelength”, which results in the formation of large pores, providing a space for solvent molecules (Fig. S3†). A close structural resemblance between parent APA and APA–DMA-1
:
1 was also confirmed by CrystalCMP. Both crystals contain analogous APA layers arranged along the b and c crystallographic axes, while the molecular packing along the a-axis is different due to the presence of a solvent in APA–DMA-1
:
1 (Fig. S4†). The second group of related structures includes APA solvates with alcohols, i.e. EtOH and BUT, that can be both the donor and acceptor of H-bonds68 (Fig. 9). Although the APA–EtOH-2
:
1 and APA–BUT-1
:
0.5 structures contain slightly different molecular conformations of APA, the molecules of the drug are packed in a similar manner, forming vivid parallel layers along the a and b axes (Fig. S5†). The APA–ACN-1
:
1 solvate shows no structural resemblance to other APA solid forms and, presumably, represents the first member of a distinct family of the related solvate structures that are waiting to be discovered. In this structure, piles of the APA molecules are assembled into a rectangular grid network with large voids occupied by solvent (Fig. S6†).
According to void map calculations, the solvates can be characterized by three different types of voids. In APA–CYH-1
:
1, the continuous voids propagate along the b and c crystallographic axes to form apparent layers (Fig. S2†) that constitute a large part of the cell volume (Table 1). Despite the structural resemblance between APA–CYH-1
:
1, APA–DMF-1
:
1 and APA–DMF-2
:
1 in terms of APA packing, these solvates show diverse solvent accommodation patterns and void volume. In APA–DMF-1
:
1, apparent separate channels are seen only along one crystallographic axis (Fig. 10). In the case of APA–DMF-2
:
1, open channels were not observed (Fig. S7†), and the solvent molecules were encapsulated in closed cavities that occupy only 10.9% of the cell volume (Table 1). Although the APA–ACE-2
:
1 and APA–DOX-2
:
1 solvates also contain continuous void channels, these are not connected to each other and extended only along the c-axis (Fig. S3†). A similar void framework is seen in APA–ACN-1
:
1. Meanwhile, the APA–EtOH-2
:
1 and APA–BUT-1
:
0.5 solid forms belong to the so-called isolated site solvate,69 as the void volume distribution occupied by solvent molecules is clearly discontinuous in void volume maps (Fig. S5†). The described differences in the void structure and solvent accommodation make a considerable impact on the thermal stability of the corresponding solvates, and this aspect is further discussed.
| Solvate | T desolv (HSM), °C | T desolv (DSC, peak), °C | Type of void | T boil, °C | Void space, % |
|---|---|---|---|---|---|
APA–DMF-1 : 1 |
108–128 | 108.0 | Mixed (open and closed) | 153.0 | 18.3 |
| 135–148 | 139.0 | ||||
APA–DMF-2 : 1 |
136–150 | 138.0 | Closed | 153.0 | 10.9 |
APA–ACE-2 : 1 |
97–123 | 110.0 | Open | 56.0 | 11.3 |
APA–DOX-2 : 1 |
110–150 | 112.0 | Open | 101.0 | 12.3 |
APA–CYH-1 : 1 |
100–125 | 122.3 | Open | 155.7 | 25.8 |
APA–DMA-1 : 1 |
100–117 | 109.2 | Open | 165.0 | 26.8 |
APA–ACN-1 : 1 |
110–118 | 112.2 | Open | 82.0 | 11.9 |
APA–EtOH-2 : 1 |
115–134 | 123.2 | Closed | 78.0 | 10.2 |
APA–BUT-1 : 0.5 |
111–130 | 117.4 | Closed | 99.0 | 12.7 |
![]() | ||
Fig. 10 Illustration of different types of voids coexisting in the crystal structures of APA–DMF-1 : 1. | ||
:
1 is approximately twice as much as the boiling point (Tboil) of neat acetone. For APA–ACN-1
:
1, the difference between Tdesolv and Tboil equals ca. 30 °C. In addition, no reliable correlation between the solvate desolvation temperature and the boiling point of the corresponding solvents was found. This fact indicates clearly that solvent molecules in these solvates not only act as the void filler, increasing the packing efficiency of the resulting crystals, but also are effectively bound with the host molecules via various intermolecular interactions, providing a notable stabilization effect on the crystal structure (this aspect is discussed below).
Particularly interesting thermal behavior is demonstrated by the APA solvates with DMF. The DSC curve of APA–DMF-1
:
1 shows multiple well-separated endothermic events and the variable steepness of the TG mass loss (Fig. 11), indicating the stepwise mechanism of the desolvation process, while the existence of the exotherm at ≈145 °C is a clear sign of the solid–solid phase transition. The first sharp endotherm at ≈108 °C seems to be associated with the removal of less tightly bound DMF molecules from the APA–DMF-1
:
1 crystal structure to form APA–DMF-2
:
1.
As Fig. 10 shows, in APA–DMF-1
:
1, two types of voids coexist within the same framework: two out of four symmetry-independent DMF molecules are located in open channels along the b-axis and expected to escape easily at a lower temperature, whereas the other two symmetry-independent solvent molecules reside in discrete cavities, which hinders their release from the crystal structure. In order to gain additional evidence for such a phase transition, single crystals of APA–DMF-1
:
1 were heated up to 130 °C under the control of HSM (Fig. S8†) and further subjected to unit cell determinations, which confirmed the formation of the APA–DMF-2
:
1 phase. In addition, the desolvation temperature value for the APA–DMF-2
:
1 crystal obtained in a separate experiment (Fig. S9 and S18†) was found to be consistent with that of the second endothermic peak in the DSC curve of APA–DMF-1
:
1 (≈139 °C), indicating that both events correspond to the desolvation process of the APA–DMF-2
:
1 phase. According to TG results, however, a cumulative weight loss in the temperature range of 25.0–145.0 °C was recorded to be about 5.7% which corresponds to ca. 0.45 mol of DMF. Further heating of the sample up to 200.0 °C resulted in an additional step mass loss of 7.3%, corresponding to the remaining 0.55 mol of the solvent (Fig. 11). The observed discrepancy in temperatures of endothermic peaks and the sample weight loss is likely because some DMF escaping from APA–DMF-1
:
1 remained as a liquid at temperatures below the boiling point of the solvent (153 °C) and underwent complete evaporation as the temperature approached the melting point of APA. A similar thermal behaviour has also been reported for the solvates of felodipine and celecoxib with high-boiling point solvents.70,71 It has to be stressed, however, that further investigations via the in situ temperature-dependent PXRD technique are required to rationalize the complex thermal behaviour of this system and to confirm the proposed desolvation pathway.
The APA–ACE-2
:
1 and APA–DOX-2
:
1 solvates show a simple one-step desolvation process and a similar evacuation temperature for the corresponding solvent (Fig. S19 and S20†). The similarity in desolvation behavior between these two solvates can be due to the close structural resemblance in terms of the host packing arrangement (Fig. 9) and the structure of voids that solvent molecules accommodate. APA–CYH-1
:
1 and APA–DMA-1
:
1 contain the largest proportion of open voids among the studied solvates (Table 1) and are expected to liberate the solvent molecules at a low temperature. However, the thermal stability of these solvates is comparable to that of other solvated forms of APA. Although both APA–CYH-1
:
1 and APA–DMA-1
:
1 structures are characterized by the presence of interlayer spaces of similar size filled by solvent molecules with comparable values of a van der Waals volume, their desolvation behavior appeared to be slightly different. For APA–DMA-1
:
1, the occurrence of two separate endothermic peaks in the DSC curve suggests an apparent two-step desolvation process and indicates that one of the symmetry-independent DMA molecules is accommodated less effectively in the host structure and released at a lower temperature (≈109 °C) (Fig. S21†). In the case of APA–CYH-1
:
1, solvent molecules escape the host structure in a cooperative manner seen in the DSC curve as a broad endothermic event with a peak temperature of ca. 122 °C (Fig. S22†). In contrast, APA–EtOH-2
:
1 and APA–BUT-1
:
0.5 demonstrate a similar one-step desolvation behavior, liberating the solvent molecules at 123.2 °C and 117.4 °C, respectively (Fig. S23 and S24†). The high thermal stability of these solvates can be attributed to a specific packing feature of the host structure, where the solvent molecules are located in compact closed cavities. Despite the relatively high value of the APA–ACN-1
:
1 desolvation temperature, which is likely due to hydrogen bonding between APA and the solvent in the crystal, the preparation procedure of this solid form exhibited scarce reproducibility, so its thermal analysis was limited to the DSC and HSM studies (Fig. S16 and S25†).
However, the results of the thermal analysis indicated that there is a clear difference in desolvation pathways and the solid-state thermal evolution between the solvates. The DSC curves of the APA–ACN-1
:
1, APA–DOX-2
:
1, APA–EtOH-2
:
1, APA–BUT-1
:
0.5 solvates show that the endothermic desolvation process is followed by a broad exothermic event that can be attributed to recrystallization of the desolvated residues into the stable crystalline phase of APA. Further PXRD investigations of the intermediate solid phase (using APA–ACN-1
:
1 and APA–DOX-2
:
1 as specimens of this group), obtained by heating the solvates slightly above the corresponding desolvation temperature in a DSC pan, revealed that solvent release leads to a collapse of the parent phase to form a metastable amorphous material which implies that the release of solvent molecules occurs through a destructive process (Fig. S26†). According to the classification scheme proposed by Petit and Coquerel,72 the observed thermal behaviour of this group of solvates corresponds to the two-step mechanism of desolvation defined as class I destructive crystallization (or class I-D.C.).
For the second group of solvates, which includes APA–DMA-1
:
1, APA–ACE-2
:
1, APA–CYH-1
:
1, DSC analysis displayed no evidence of the exothermic transition signal prior to melting of the sample, indicating that release of solvent molecules is accompanied by a rapid reorganization of the parent packing arrangement so that the dehydration process is likely to follow the class II cooperative reorganization mechanism in terms of Petit and Coquerel's notation. This thermal behaviour is expected for APA–DMA-1
:
1 as it was found to exhibit packing similarity with unsolvated APA (Fig. 9). It is interesting to note that APA–ACE-2
:
1 and APA–DOX-2
:
1 appeared in the different groups of solvates despite the observed similarity in desolvation temperature and the close structural resemblance. The difference in desolvation patterns between these two solvates may be explained by considering the set of APA molecular conformations in the crystal structures. As Fig. 8 demonstrates, the APA–ACE-2
:
1 solvate contains APA conformations that are similar to these in the bare APA, indicating relatively low energy requirements for conformational adjustment during the reorganization process. According to HSM studies, the crystal lost transparency after solvent removal, but the original crystal integrity was maintained during the desolvation process, suggesting that the pseudomorphosis phenomenon is taking place (Fig. S10†). A similar desolvation behavior was also observed for the APA–CYH-1
:
1 solvate (Fig. S13†). In addition, the whole desolvation process for this solvate appeared to be relatively slow, and the parent crystals have enough time to rearrange into the stable solvent-free form of APA. In the case of APA–DOX-2
:
1, however, the direct solid-state phase transformation into APA without losing the long-range order does not seem to be possible due to the high energy barrier associated with conformational changes. A further quantitative study of the desolvation process is currently our priority, and we plan to proceed with a more detailed investigation of the APA solvates' thermal properties, particularly by measuring the kinetics of the desolvation reaction via TG and temperature-dependent PXRD.
The lattice energy values, stabilization energies and binding energies of APA solvates are collected in Table 2. While the absolute values of Elatt and its components are different, the results obtained by different methods show common trends that reflect the relative stability of different solvates at zero Kelvin. From the data provided in Table 2, it can be seen that the lattice energy and overall stability of a solvent is a product of two semi-independent factors: i) the relative stability of the APA framework (which is numerically equal to the Estab value – the lattice energy of a crystal with solvent molecules removed) and ii) the binding energy of the solvent molecules Ebind, or the difference between the lattice energies of a solvated and a hypothetical non-solvated crystal (eqn (2)). The ratio of these quantities and absolute Elatt value can be used to rank the solvates from the most energetically favorable to the least.
| Solvate | E latt | E stab | E bind | ||||||
|---|---|---|---|---|---|---|---|---|---|
| DFT-D3 | QTAIMC | CE-B3LYP | DFT-D3 | QTAIMC | CE-B3LYP | DFT-D3 | QTAIMC | CE-B3LYP | |
APA–DMF-1 : 1 |
−285.5 | −216.1 | −247.2 | −174.0 | −132.4 | −183.9 | −111.5 | −83.7 | −63.1 |
APA–DMF-2 : 1 |
−249.2 | −197.1 | −224.6 | −186.2 | −150.6 | −190.0 | −63.0 | −46.6 | −34.6 |
APA–ACE-2 : 1 |
−224.2 | −169.5 | −216.7 | −185.2 | −139.3 | −191.7 | −39.1 | −30.2 | −25.0 |
| −232.7 | −177.1 | −199.3 | −187.8 | −148.0 | −176.4 | −44.9 | −29.1 | −22.9 | |
APA–DOX-2 : 1 |
−243.1 | −190.4 | −230.4 | −186.2 | −157.1 | −201.4 | −47.0 | −33.2 | −29.0 |
APA–CYH-1 : 1 |
−287.0 | −220.7 | −241.5 | −179.9 | −124.8 | −173.7 | −107.1 | −96.0 | −67.8 |
APA–DMA-1 : 1 |
−282.6 | −163.2 | −221.4 | −176.6 | −94.1 | −159.2 | −106.0 | −69.1 | −62.2 |
APA–ACN-1 : 1 |
−257.2 | −212.7 | −228.2 | −172.1 | −158.4 | −183.0 | −85.1 | −54.3 | −45.2 |
APA–EtOH-2 : 1 |
−151.7 | −190.2 | −189.5 | −177.0 | −120.6 | −181.3 | 25.3 | −93.3 | −8.2 |
| −214.0 | |||||||||
APA–BUT-1 : 0.5 |
−160.1 | −168.4 | −198.9 | −173.7 | −137.1 | −176.8 | 13.5 | −31.3 | −22.1 |
The way of packing APA molecules in the crystal structures is found to impact the thermal stability of the crystal. For instance, the packing of APA molecules in APA–DMA-1
:
1 in a manner similar to pure APA is inefficient, resulting in the lowest Estab value of all solvates (−159 kJ mol−1 according to CE-B3LYP). The solvate is stable at low temperatures due to the high fraction of APA–solvent interactions. However, the presence of 2D layers composed entirely of DMA molecules and isostructurality with pure APA prohibits the thermal desolvation with consequent transformation to non-solvated APA. As a result, this crystal is characterized by the lowest desolvation temperature of all considered structures, which is 56 °C lower than the boiling point of the pure solvent. In contrast, the packing of APA molecules in the APA–ACN-1
:
1 crystal is rather uncommon, since no H-bond chains between amide fragments are observed in the structure. Instead, the N–H groups form the N–H⋯N bonds with nitrogen atoms of ACN with Eint = 13 kJ mol−1 according to QTAIMC, increasing the Estab value. For this reason, APA–ACN-1
:
1 is the only crystal out of the solvates with a 1
:
1 component ratio with the Tdesolv higher than the Tboil of the pure solvent. Another example of structures with exceptional thermal stability is the pair of solvates with EtOH and BUT, where solvent molecules are trapped within the closed voids of the APA framework. Similar to APA–ACN-1
:
1, these solvents are characterized by high Estab values and low Ebind values, which is reflected in the desolvation thermogram as Tdesolv > Tboil and the absent exo-effect. For solvates with an open channel structure, a clear correlation exists between the fraction of APA–APA interactions and the desolvation temperature decrease (Fig. S27†). The larger contribution of Ebind leads to destabilization of the APA framework and a decrease in the desolvation temperature.
The combination of open channels and closed voids in the APA–DMF-1
:
1 crystal leads to complex desolvation behaviour. Two out of four solvent molecules in the asymmetric unit located in the open pore have a binding energy equal to 19–21 kJ mol−1, while the other two are strongly bound within the framework with Ebind = 36–38 kJ mol−1. The difference in binding energies between symmetry-inequivalent DMF molecules helped to elucidate the two-step desolvation process of APA–DMF-1
:
1 observed in the DSC and TG experiments (Fig. 11).
The correlation between the fraction of APA–solvent interactions (which are numerically equal to Ebind) in the Elatt (QTAIMC) and van der Waals volume of the solvent implies that the main contribution to the structure stabilization came from dispersive interactions rather than hydrogen bonds (Fig. S28†). However, the analysis of individual intermolecular contacts reveals the high fraction of C–H⋯O/N/F/S bonds in most studied crystals.
:
1) contain two or four symmetry-independent APA molecules in the asymmetric unit with close conformation energy. According to the crystal packing similarity analysis, no 3D isostructurality was observed among the studied crystal structure; however, five solvates and the parent APA were found to contain a similar 2D zigzag-like packing arrangement of the APA molecules. The results of the thermal analysis showed that all considered APA solvates decompose at temperatures above 100 °C, despite the presence of a channel-like open void structure found in half of the studied solvates, suggesting an easy “escape route” for the solvent molecules. This fact indicates clearly that solvent molecules in the solvates not only act as the void filler, increasing the packing efficiency of the resulting crystals, but also are effectively bound with the host molecules via various intermolecular interactions, providing a notable stabilization effect on the crystal structure. According to the desolvation patterns, the APA solvates can be separated into two groups: solvates that recrystallize after desolvation via an intermediate amorphous phase with a characteristic exothermal event in the DSC curve, and solvates that rapidly transform to crystalline apalutamide with no exothermal event. The solvates in the second group are characterized by one of the following features: i) packing similarity with pure apalutamide and ii) similarities in conformations of APA molecules in the initial solvate and pure apalutamide. The structure and volume of voids occupied by solvent molecules were found to have an impact on the desolvation temperature of a solvate. As follows from lattice energy calculations and theoretical analysis of non-covalent interactions, the thermal stability of the studied solvates is governed by the fraction of APA–APA and APA–solvent interactions in a crystal. The inefficient packing of apalutamide molecules associated with low stabilization energy leads to lower desolvation temperatures and facilitates the transformation to pure APA, while the structures with a higher fraction of APA–APA interactions in the lattice energy are found to be more stable. The main forces responsible for the binding of solvent molecules in the crystal are weak C–H⋯X hydrogen bonds and van der Waals interactions. In conclusion, the present work provides valuable insights into the interplay between the molecular conformation, packing features and thermal properties of solvated apalutamide crystalline forms.
rziņš, D. Zvaniņa and A. Trimdale, Detailed Analysis of Packing Efficiency Allows Rationalization of Solvate Formation Propensity for Selected Structurally Similar Organic Molecules, Cryst. Growth Des., 2018, 18(4), 2040–2045 CrossRef.
rziņš,
et al., On the Rationalization of Formation of Solvates: Experimental and Computational Study of Solid Forms of Several Nitrobenzoic Acid Derivatives, Cryst. Growth Des., 2020, 20(9), 5767–5784 CrossRef.
rziņš, T. Rekis and A. Actiņš, Comparison and Rationalization of Droperidol Isostructural Solvate Stability: An Experimental and Computational Study, Cryst. Growth Des., 2014, 14(7), 3639–3648 CrossRef.Footnote |
| † Electronic supplementary information (ESI) available. CCDC 2151550–2151553 and 2152151–2152157. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d2ce00216g |
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