Open Access Article
Yuvraj
Singh
a,
Chandan K.
Choudhury
b,
Rikhia
Ghosh
c and
Rakesh S.
Singh
*d
aDepartment of Physics, Indian Institute of Science Education and Research (IISER) Tirupati, Tirupati, Andhra Pradesh 517619, India
bPrescience Insilico Private Limited, Bengaluru, Karnataka 560066, India
cDepartment of Pharmacological Sciences, Icahn School of Medicine, Mount Sinai, New York 10029, USA
dDepartment of Chemistry, Indian Institute of Science Education and Research (IISER) Tirupati, Tirupati, Andhra Pradesh 517619, India. E-mail: rssingh@iisertirupati.ac.in
First published on 22nd August 2024
Understanding and control of the effective interaction between nanoscale building blocks (colloids or nanoparticles) dispersed in a solvent is an important prerequisite for the development of bottom-up design strategies for soft functional materials. Here, we have employed all-atom molecular dynamics simulations to investigate the impact of polymer grafting on the solvent-mediated effective interaction between the silica nanoparticles (Si-NPs) in water, and in turn, on its bulk structural and thermodynamic properties. We found that the nature of the short grafting polymers [characterized by their interaction with water (hydrophobicity or hydrophilicity) and molecular weight] has a profound effect on the range and strength of the effective interaction between the Si-NPs. The hydrophobic polymer [such as polyethylene (PE)]-grafting of Si-NP gives rise to a more attractive interaction between the Si-NPs compared to the hydrophilic polymer [such as polyethylene glycol (PEG)] and non-grafted cases. This study further provides fundamental insights into the molecular origin of the observed behavior of the effective pair interactions between the grafted Si-NPs. For PE-grafted Si-NPs, the confined water (water inside the cavity formed by a pair of Si-NPs) undergoes a partial dewetting transition on approaching below a critical inter-particle separation leading to a stronger attractive interaction. Furthermore, we report that the effective attraction between the PE-grafted Si-NPs can be reliably controlled by changing the grafting PE density. We have also investigated the bulk structural and thermodynamic behavior of the coarse-grained Si-NP system where the particles interact via effective interaction in the absence of water. We believe that the insights gained from this work are important prerequisites for formulating rational bottom-up design strategies for functional materials where nano- (or, colloidal) particles are the building blocks.
The solvent-mediated (effective) interaction between the nanoscale particles can be easily tuned by manipulating the characteristics of the particles,21–24 the properties of the solvent,25,26 and the thermodynamic conditions.27 For example, nanoparticles functionalized with ligands such as short DNA strands are widely used to alter the effective interaction between the nanoparticles to get the desired self-assembled structures.28–30 Hence, functionalizing nanoparticles with ligands or changing the characteristics of the solvent provides a means to adjust and control the inter-particle interactions—offering a versatile approach to influence the self-assembly process and ultimately tailor the properties of the resulting materials. There is now a growing interest in designing nanoscale building blocks with anisotropic shape (e.g., see ref. 21 and 31–35) or with specific directional interactions (e.g., Janus and patchy nanoparticles/colloids36–40) to control the morphology and size of the self-assembled aggregates. This control of morphology and size of aggregates at length scales of interest is vital for tuning material properties. For example, nanoscale patterns are crucial for charge separation and recombination in photovoltaics, self-assembled aggregate structures significantly affect bulk conductivity, etc.41
Much attention has been devoted to understand the profound influence of the nature of the underlying free energy landscape on the pathways of self-assembly of molecular and colloidal systems.42–45 However, lesser attention has been devoted in understanding the interplay between local interactions and global free energy landscape (containing multiple crystalline and fluid phases) of the system, especially when the constituents are nanoscale particles. Understanding the intricate interplay between the local interactions and the global free energy landscape holds the key to predictably design the target materials. Recently, computer simulations have proven essential in depicting complex structures achievable by altering the interaction potential among these building blocks.46,47 In a recent study, Jiang et al.48 reported that interactions between DNA strands of distinct sequences result in the aggregation of DNA-conjugated gold nanoparticles.49 Another noteworthy study, particularly in the realm of DNA-mediated isotropic interactions,50 has shown the feasibility of tuning such interactions to facilitate particle self-assembly. This method holds promise for constructing custom-designed functional materials. Many recent studies, such as of Mittal et al.,49 have successfully achieved different crystal structures by manipulating the attractive and repulsive ranges of pair potentials between DNA-functionalized nanoparticles. Despite significant breakthroughs in the characterization and control of local inter-particle interactions at nanoscales,50–52 there is still a distinct lack of (a) systematic and predictive approaches to alter two-body effective interactions, and (b) robust mapping of the local pair interactions to the bulk structural and thermodynamic properties. These are the important prerequisites for the synthesis of target materials through a bottom-up self-assembly route.
In this work, we aim to explore the impact of polymer (or, ligand) grafting on the (solvent-mediated) effective interaction between the nanoparticles, and in turn, on bulk structural and thermodynamic properties. We have used silica nanoparticle (Si-NP) as our model system, and to modulate interactions between Si-NPs, we employed polymers (ranging from hydrophilic to hydrophobic)—polyethylene glycol (PEG), polyethylene (PE), and polymethyl methacrylate (PMMA)—grafted onto the surface of the Si-NP. The selection of these specific polymers is grounded in experimental studies, where successful grafting of these polymers onto the surface of Si-NPs has been demonstrated.53–55 Additionally, our choice of polymers aligns with the availability of well-optimized force field parameters ensuring accurate in silico all-atom representation in our computational model. Here, the effective interaction between the Si-NPs is characterized by computing the potential of mean force (PMF) between two (bare or grafted) Si-NPs at two different temperatures. The PMF of the bare Si-NP serves as a reference point for our study, enabling an exploration of how grafting with PEG, PMMA, and PE influences inter-particle interactions (measured in terms of the position, depth and shape of the PMF). We have also probed the molecular origin (rooted in solvent) of the dependence of the PMF on the nature of the grafting polymer, and the structural and thermodynamic behavior of bulk coarse-grained systems consisting of many Si-NPs interacting via effective pair interactions.
The organization of the rest of the paper is as follows. In Section 2 the computational modelling of the grafted Si-NPs and molecular dynamics (MD) simulation details are presented. In Sections 3.1 and 3.2, we discuss the solvent-mediated effective interactions between two grafted Si-NPs and the solvent arrangement around them. The microscopic structural origin of the changes of the solvent-mediated interactions through polymer grafting is discussed in Sections 3.3–3.5. The effects of grafting polymer density on the PMF of PE-grafted Si-NPs are discussed in Section 3.6 and the structural and thermodynamic properties of the coarse-grained bulk Si-NP system are presented in Section 3.7. The major conclusions from this work are summarized in Section 4.
000 TIP3P water62 molecules in a cubic box at 1 bar pressure. The average box length is ∼12 nm at the thermodynamic conditions studied here. The short-range van der Waals interaction potential was truncated at 1.2 nm, and long-range corrections were applied to the short-range interaction for energy and pressure. The coulombic interaction was truncated at 1.2 nm, and the particle mesh Ewald (PME)63 was used to compute the long-range contributions to the electrostatic interaction. The Nóse–Hoover thermostat64,65 was used to maintain a constant temperature with 0.4 ps relaxation time. Constant pressure was maintained using Parrinello–Rahman barostat66 with 2 ps relaxation time. We have used 2 fs time step to propagate the trajectories. The rigid body constraints were implemented using the linear constraint solver (LINCS)67 algorithm and periodic boundary conditions were applied in all three directions. For the analysis of water arrangement around a single Si-NP, we performed MD simulations on a system consisting of a single nanoparticle of diameter 2 nm in a cubic box (average box length is ∼8 nm) at temperature 300 K and pressure 1 bar. We ran the simulations for 300 ns to ensure the proper thermal equilibration of the system.
The effective interaction (or, PMF) for the bare Si-NP is short-range compared to the grafted Si-NPs and shows a very weak attraction (3.5 kJ mol−1 or ∼1.5kBT at 300 K; kB is Boltzmann's constant) near the contact distance (Fig. 2A). Contrary to this, the PMF of the PE-grafted Si-NP exhibits a highly attractive nature (85 kJ mol−1 or ∼35kBT at 300 K), surpassing that of the bare Si-NP by more than 20 times near ambient temperature. Additionally, the interaction range (measured by the width of the PMF basin) has increased to ∼4 nm, exceeding that of the bare Si-NP by more than 1.5 times. However, the σeff remains close to 2 nm (bare Si-NP diameter). These observations are intriguing and indicate that the attachment of a common (hydrophobic) polymer, PE, significantly modulates the PMF. Like the bare Si-NP, the PMF for the PEG-grafted Si-NPs shows a marginally stable basin compared to the PE-grafted case. The strength of the effective interaction (measured by the depth of the PMF basin) between two PMMA-grafted Si-NPs in water is 12 kJ mol−1 (or, ∼5kBT at 300 K). We further note that the PMF for the PEG and PMMA-grafted Si-NPs shows a softer repulsive core compared to the bare and PE-grafted Si-NPs. The effective diameter σeff is also significantly higher (>3 nm) for these two cases. These differences in the effective diameter and softness can be understood in terms of the grafting polymer's mass (or, occupied volume) and conformational arrangement around the Si-NP in water. We also note that the computed effective interactions do not change noticeably on increasing the temperature from 300 K to 350 K.
The above reported PMF behavior can be qualitatively rationalized in the following way (a more detailed quantitative explanation is provided in the next section). The PEG (H-(OCH2CH2)n-OH) is hydrophilic, and water serves as a good solvent since the terminal OH group of PEG can form H-bond with water. However, PE is hydrophobic in nature. In the presence of a good solvent (for example, PEG in water), the grafting polymer chains tend to adopt extended conformations, leading to an increase in the effective diameter of the Si-NP. Under these conditions, the PMF exhibits a soft repulsive core starting at a larger (>2 nm) inter-particle separation (e.g., see Fig. 2C). However, for the bad solvent case (for example, PE in water), we observe a relatively hard repulsive core with a smaller effective diameter (see Fig. 2B). Furthermore, the PMMA-grafted Si-NP shows a higher effective diameter (∼3.1 nm) due to its larger molecular weight (the weight of the polymer of length 5 for PMMA, PEG, and PE is 501.6, 238.3, and 142.3 amu, respectively).
Thus, the nature of the grafting polymers profoundly affects the range and strength of the effective interaction between the nanoparticles. A predictive control over the effective interaction between the nanoscale particles dispersed in solvent via polymer grafting can provide a reliable way of altering the self-assembly pathways and kinetics, including the self-assembled structure and in turn its function. It has already been reported that the range and strength of the effective interaction between the colloids has a drastic effect on the phase diagram and nucleation kinetics.42,69 To understand the molecular origin of the alteration of the effective interaction via polymer grafting, in the subsequent sections (Sections 3.2 and 3.3) we have characterized the density and structure of water molecules around the grafted Si-NP (including bare) and also confined in-between the Si-NPs.
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The ρsw profile shows a maximum at around 1 nm for the bare Si-NP suggesting that many water molecules are sticking (more than the bulk) to the Si-NP surface (see Fig. 3A). The silica surfaces exhibit hydrophilic characteristics primarily due to the presence of silanol groups (Si–O–H) on the surface. These groups, featuring oxygen atoms with partial negative charge readily get H-bonded with the water molecules. A well-defined maximum in ρsw(r) in the vicinity of the Si-NP surface also suggests that the interfacial water molecules are highly structured. A similar enhanced water density near the surface is also reported for the gold(Au)-NP when hydroxyl tails are introduced on the surface.71 The incorporation of a hydroxyl tail on the Au-NP's surface enhances the formation of hydrogen bonds between the water and the hydroxyl tail. In the vicinity of the grafted (PE, PEG, and PMMA) Si-NPs, the water density around the Si-NP surface is significantly lower compared to the bulk. This observed lower water density in the vicinity of the grafted Si-NPs is due to the interfacial region being occupied by the grafting polymer atoms (see Fig. S1 in the ESI†). Also, the decrease of water density for the case of PMMA is more compared to the PE and PEG. This can be attributed to the more number of particles present in the 5-mer PMMA polymer compared to the other grafting polymers of the same length.
The computed qst profiles (see Fig. 3B) show that, for the bare Si-NP, even though the water density is approximately 40–60% of the bulk density near the (Si-NP–water) interface, interfacial water molecules are highly tetrahedral (97% of qt–bw). This arises because water tends to form H-bonds with the –(OH) groups on the Si-NP surface. We observe a significant decrease in water's tetrahedral order around the Si-NP for all the grafted Si-NPs with the PE-grafted Si-NP showing the higher tetrahedrality compared to the PEG and PMMA-grafted Si-NPs. The enhanced tetrahedrality for the PE case can be understood in terms of its hydrophobic nature. The hydrophobic PE polymers are mostly wrapped around the Si-NP surface and does not perturb considerably the water network compared to the hydrophilic PEG polymers. Interestingly, we also note that, both the water density and tetrahedral order reach their respective bulk value at ∼2.4 nm from the centre of the Si-NP for all the grafted Si-NPs (Fig. 3A and B).
A detailed analysis of the behavior of qst profile around the Si-NP necessitates a comprehensive study of the nature of the interaction between different polymers and water molecules. This could also involve investigating the specific bonding patterns, and steric hindrances the polymer chains exert. Nevertheless, the behavior of water's density and order around a single Si-NP provides us a reference point to study Si-NP surface polarity-induced structural perturbation in the solvent where two or many Si-NPs are present and its consequences on the (solvent-mediated) effective interaction between them. We also note that the solvent distribution around the Si-NP in the presence of more than one Si-NP could be very different. However, for a dilute Si-NP system, we expect to have a similar solvent distribution in the vicinity of each Si-NP.
Like the bare Si-NP, the PEG-grafted Si-NP also shows a very similar shallow PMF depth but with a larger effective diameter (σeff ∼ 3 nm). Although both the bare and PEG-grafted Si-NPs have similar potential depths, ρcavs and qcavts for PEG at smaller rcom is ∼22% less than that of the bare Si-NP case at lower distances (see Fig. 4B and C). This notable solvent density difference can be understood in terms of the volume occupied by PEG polymers in an extended conformation (as PEG is hydrophilic, it tends to extend its conformation in water). Consequently, the PEG-grafted system experiences additional pressure due to the grafting polymer chain atoms, which compensates for the reduced water contribution (see also Fig. S2A in the ESI†).
Again, contrary to the bare Si-NP, in the case of PE-grafted Si-NP, the ρcavws and qcavts shows a drastic change on lowering rcom near rcom = 4 nm. This sudden decrease of ρcavws shows a close resemblance with the cavitation (or, dewetting) transition of the water molecules confined between two hydrophobic plates72–75 (see also Fig. S2B in the ESI†). Here, however, we are not observing a complete cavitation but rather ∼20% decrease in the density of water. This partial cavitation (or, dewetting) can be understood in terms of the competition between the hydrophilic Si-NP surface's favorable interaction with water and the grafted PE–polymer's hydrophobic character. This partial dewetting creates a substantial pressure difference between the outside and in-between the Si-NPs, compelling the Si-NPs to remain in closer proximity. This is also evident from the PMF where the attractive force starts dominating around the same distance (4 nm) and continues to dominate until the hard repulsive core is encountered. This type of dewetting-induced attraction is known to play an important role in many of the biophysical phenomena, such as, protein folding, protein–ligand binding etc.76
The water density and structural order for the PMMA-grafted Si-NP is lowest among the other cases which is a consequence of the large volume occupied by the PMMA 5-mer due to its high molecular weight. Similar to the PE-grafted Si-NP, the water density confined inside the PMMA Si-NPs also shows a rapid change (compared to the bare and PEG-grafted cases) around 4.5 nm which again is correlated with the enhanced attraction compared to the bare and PEG-grafted Si-NPs. However, unlike the PE-grafted case, the total number of heavy atoms (atoms excluding hydrogen) monotonically increases on decreasing the inter-particle separation rcom (see Fig. S2C in the ESI†). Therefore, the enhanced interaction between the PMMA-grafted Si-NPs in water compared to the bare and PEG-grafted cases (see Fig. 2) can not be unambiguisely attributed to (partial) dewetting-induced attraction.
To gain deeper insights into water rearrangement inside the cavity, in Fig. 5, we have reported the scaled water density profile in between the two Si-NPs for rcom = 5.5 nm and 4.0 nm. At a larger separation of the Si-NPs, confined water density reaches the bulk density around the center of the cavity. However, for smaller inter-particle separation, there is a drastic decrease in the density inside the cavity for all the grafted Si-NP cases. The bare Si-NP shows bulk-like density even for this smaller inter-particle separation of 4.0 nm. The decrease in water density inside the cavity for the PE-grafted Si-NPs is significantly greater compared to the bare and PEG-grafted Si-NPs. This observation further establishes that the enhanced attraction between the PE-grafted Si-NPs in water is dewetting-induced. In contrast, for PMMA-grafted Si-NPs, the decrease in water density inside the cavity is primarily due to the large volume occupied by the heavy PMMA 5-mers (see Fig. S2C in the ESI†).
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| Fig. 5 The scaled water density (ρcavws) profile inside the cylindrical cavity formed by two Si-NPs (see Fig. 4A) fixed at a center-to-center separation of 5.5 nm (blue) and 4.0 nm (red) for the bare (A), PE-grafted (B), PEG-grafted (C), and PMMA-grafted (D) Si-NP. Here, dcom represents the distance from the center of the Si-NP along the direction connecting the centres of the two Si-NPs. We note that, at lower inter-particle separation (4.0 nm), the cavity water density for the case of PE and PMMA-grafted Si-NPs is significantly lower than the bare and PEG-grafted Si-NPs. | ||
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| Fig. 7 The normalized distribution of the translational mobility (μ) of the water molecules (p(μ)) inside the cylindrical cavity formed by two Si-NPs (see Fig. 4A) for the bare (A), PE-grafted (B), PEG-grafted (C), and PMMA-grafted (D) Si-NP. | ||
However, the scenario is different for the grafted Si-NPs. At lower rcom, mobility distribution peaks at a lower value than the bulk. The peak gradually shifts towards higher mobility as the rcom increases and eventually will merge with the bulk distribution. This trend seems a bit counter-intuitive as decreasing inter-particle separation leads to the decrease of both the density and structural order of the confined water, which should give rise to higher mobility. To understand this behavior, we computed the polymer atom number density profile inside the cylindrical cavity formed by two grafted Si-NPs for a given inter-particle separation (see Fig. S3 in the ESI†). We found that, even though the water density decreases on decreasing the inter-particle separation, the available volume is occupied by the grafting polymer units, giving rise to a sluggish translation mobility. Thus, polymer grafting influences water mobility within the cavity by hindering the translation dynamics due to the excluded volume (volume occupied by the grafting polymers) effect. The binding (H-bonding) of the confined water molecules with the grafting polymer strands could also give rise to a sluggish water mobility. However, this aspect is not explored here.
To further investigate the underlying solvent-driven mechanisms of the above observation, we examined the inter-particle separation dependence of the scaled average density ρcavws and tetrahedral order qcavts (defined in Section 3.3) of water molecules confined between two Si-NPs for all three grafting polymer densities (see Fig. 8B and C). We observe a sharp decrease in ρcavws and qcavts when rcom falls below 4 nm for all three surface coverage cases. Notably, this decrease is more gradual for the 15% surface coverage compared to the 20% and 25% surface coverage cases. The density and tetrahedral order of water inside the cavity (confined water) are relatively higher for the 15% surface coverage which may be responsible for the shallower PMF minimum observed in this case. However, for the 20% and 25% surface coverage cases, the density and tetrahedral order of confined water are very similar (within reported statistical error). Therefore, further microscopic analysis is needed to elucidate the increase in effective inter-particle attraction observed with increasing PE surface coverage from 20% to 25%.
So far we have discussed the alteration of the local two-body effective interaction between the Si-NPs via polymer grafting and the molecular origin of the same. However, now the natural question arises—how does this alternation of the inter-particle effective interaction affect the bulk structural and thermodynamic properties of the system containing many Si-NPs dispersed in water (or, solvent, in general)? We have tried to address this in the next section by adopting a coarse-grained approach.
We also computed the two-body approximation of the translational contribution to the excess (relative to that of the ideal gas at the same thermodynamic condition) entropy (S(2)t), defined in terms of the RDF as,79,80
where ρ is the number density, N is the number of Si-NPs. The S(2)t measures the reduction of the entropy (or, the number of accessible states) with respect to the ideal gas limit due to two-body inter-particle correlations. In Fig. 9C, we show the S(2)t for both the bare and polymer-grafted Si-NP systems. We observe that the S(2)t is significantly lower for the PEG and PMMA-grafted Si-NP systems compared to the bare Si-NP. We have not calculated the S(2)t for the PE-grafted Si-NP system as the system spontaneously crystallizes near ambient conditions (see the RDF of the PE-grafted Si-NP system reported in Fig. 9B).
From the effective interaction potential, it is possible to evaluate the second virial coefficient B2(T), defined as
where β = 1/kBT. The calculated B2(T) values are approximately −34.0, −1.6 × 102, −6.7 × 103, and −2.2 × 1015 (in units of nm3) for the bare, PEG, PMMA and PE grafted Si-NPs, respectively. At the level of B2(T), the equation of state is given as, βP ≈ ρ + B2(T)ρ2, where ρ is the number density of the dispersed Si-NPs. For colloidal or protein solutions, it is reported that for those solvent conditions that are known to promote crystallization, B2 is restricted to a narrow range of small negative values.69,81 Therefore, controlling B2 through polymer grafting could have strong implications on the kinetics and pathways of self-assembly of Si-NPs.
It is worth noting here that, due to the computationally intensive nature of the all-atom modelling of grafted Si-NP systems, in this work, we have not computed the PMF between the Si-NPs of diameter >2 nm. It would be interesting to explore how the effective interaction depends on the size of the Si-NP, in addition to the length of the grafting polymer chains and solvent properties. We also acknowledge that in our CG simulations, the grafted Si-NPs are modelled as spheres, which neglects the entropic contributions of the grafting groups. This approximation could potentially influence the overall system's bulk behavior. Therefore, employing a more refined modelling approach that accounts for this entropic factor would be desirable to more accurately capture the full complexity of the system.
On a general note, this study provides deeper insights into the surface polarity control through nanoparticle surface–ligand grafting and its effect on solvent-mediated interaction between the dispersed nanoparticles in solvent. This study also sheds new light on the non-trivial relationship between the effective interaction between the nanoscale building blocks and the bulk structural and thermodynamic properties. These insights are important prerequisites for finding rational inverse (bottom-up) design strategies for soft functional materials. An interesting avenue for future research would be to map the local (effective) interactions onto the nature of the free energy landscape containing fluid and crystalline phase(s) of the system. This control of the global free energy landscape through local interactions can potentially enable us to control the self-assembly pathways and kinetics by avoiding the undesired structures (or, minima in the free energy landscape).
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4sm00512k |
| This journal is © The Royal Society of Chemistry 2024 |