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Issue 20, 2017
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On the enzymatic incorporation of an imidazole nucleotide into DNA

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The expansion of the genetic alphabet with an additional, artificial base pair is of high relevance for numerous applications in synthetic biology. The enzymatic construction of metal base pairs is an alluring strategy that would ensure orthogonality to canonical nucleic acids. So far, very little is known on the enzymatic fabrication of metal base pairs. Here, we report on the synthesis and the enzymatic incorporation of an imidazole nucleotide into DNA. The imidazole nucleotide dIm is known to form highly stable dIm-Ag+-dIm artificial base pairs that cause minimal structural perturbation of DNA duplexes and was considered to be an ideal candidate for the enzymatic construction of metal base pairs. We demonstrate that dImTP is incorporated with high efficiency and selectivity opposite a templating dIm nucleotide by the Kf exo. The presence of Mn2+, and to a smaller extent Ag+, enhances the efficiency of this polymerization reaction, however, without being strictly required. In addition, multiple incorporation events could be observed, albeit with modest efficiency. We demonstrate that the dIm-Mn+-dIm cannot be constructed by DNA polymerases and suggest that parameters other than stability of a metal base pair and its impact on the structure of DNA duplexes govern the enzymatic formation of artificial metal base pairs.

Graphical abstract: On the enzymatic incorporation of an imidazole nucleotide into DNA

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Publication details

The article was received on 06 Apr 2017, accepted on 01 May 2017 and first published on 02 May 2017

Article type: Paper
DOI: 10.1039/C7OB00858A
Citation: Org. Biomol. Chem., 2017,15, 4449-4455

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    On the enzymatic incorporation of an imidazole nucleotide into DNA

    P. Röthlisberger, F. Levi-Acobas, I. Sarac, P. Marlière, P. Herdewijn and M. Hollenstein, Org. Biomol. Chem., 2017, 15, 4449
    DOI: 10.1039/C7OB00858A

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