DOI:
10.1039/D5QI01980J
(Research Article)
Inorg. Chem. Front., 2026,
13, 232-245
Structural resilience in organic–inorganic stacked assemblies: sulfur-mediated self-compensating interaction and metal identity masking in group 10 dithiocarbamate cocrystals with tetracyanobenzene
Received
26th September 2025
, Accepted 18th October 2025
First published on 21st October 2025
Abstract
This work investigates the relative influence of metal identity versus ligand environment in determining supramolecular architecture of stacked hybrid organic–inorganic systems. We demonstrate a sulfur-mediated self-compensating mechanism that masks metal-specific electronic differences, enabling ligand-controlled assembly over conventional metal-directed organization. Through systematic investigation of group 10 metal dithiocarbamate cocrystals [M(S2CNR2)2] (M = Ni, Pd, Pt; R2 = alkyl) with 1,2,4,5-tetracyanobenzene, we reveal structural resilience—identical parallel-displaced supramolecular architectures are maintained across the entire Ni–Pd–Pt triad despite fundamental differences in dz2-orbital nucleophilicity that typically govern such assemblies. This contradicts established principles where metal variation should produce distinctly different structural outcomes. Comprehensive quantum chemical analysis using QTAIM, IGM, ETS-NOCV, and energy decomposition methods reveals that S atoms from the dithiocarbamate ligands actively neutralize inherent metal-specific properties, creating electronically equivalent {MS4} building blocks. Despite different metals, remarkably consistent interaction energies (−40.6 to −42.8 kcal mol−1) and metal contributions (13.9–15.9%) demonstrate functional equivalence in the supramolecular recognition. Our study establishes ligand-mediated metal identity masking as a design principle for creating structurally predictable metal-involving materials regardless of metal center.
1. Introduction
Stacking plays a crucial role in determining the supramolecular architecture of flat molecular systems. These noncovalent interactions (NCIs) between planar moieties have been extensively studied in supramolecular chemistry, molecular recognition, and materials science.1–6 The nature of stacking has evolved beyond the classical π⋯π model to encompass more complex phenomena, including π-hole⋯π interactions with strong charge transfer.7–9 Recent discoveries have revealed a remarkable dichotomy in stacking-directing forces: identical stacked motifs can arise from distinctly different combinations of underlying interactions.10,11
Hybrid organic–inorganic cocrystals represent a fascinating class of materials that integrate planar molecular systems through stacking to generate emergent properties substantially different from those of individual coformers.12–14 These characteristics arise from unique intermolecular interactions and electronic environments created within the cocrystal assembly. In these systems, metal sites introduce additional complexity through metal-involving NCIs, such as tetrel bonding via metal d-orbitals, which can significantly influence stacking behavior.14–17 Such assemblies enable enhanced luminescence,18,19 improved optoelectronic efficiency,20 novel supramolecular architectures,14,21,22 and emerging properties including photothermal conversion and circularly polarized luminescence.23–25
The role of metals in hybrid stacking has been considered particularly profound and structure-determining. Pioneering work by Zarić and colleagues has identified the nature of stacking between organic aromatic compounds and planar metal complexes.26–35 Our previous investigations have demonstrated that square-planar group 10 metal species participate in structure–determining interactions through their dz2-metal orbitals with remarkable efficiency.15–17,36–38 For instance, {dz2-MIIS4} entities in dithiocarbamate complexes act as integrated five-center nucleophiles toward π-hole donors, forming characteristic reverse sandwich structures.15 Metal-involved tetrel bonding has been identified as a principal component in stacking interactions between platinum(II) square-planes and perfluorinated aromatics.16
These studies have consistently established metal identity as the critical and dominant determinant of supramolecular architecture. The electronic properties of the metal center, particularly dz2-nucleophilicity, have been recognized as primary structure-directing factors, with the progression from NiII → PdII → PtII typically correlating with increasing dz2-nucleophilicity, leading to predictable variations in interaction strength and resulting crystalline arrangements.39 This metal-centric model has guided rational design in metal-involving crystal engineering (for recent studies see ref. 40–43), with metal selection being considered the primary determinant of structural outcomes.
However, recent investigations into halogen bonding properties of sulfur atoms in dithiocarbamate systems have revealed that ligand environments can play significant roles in modulating intermolecular NCIs.44 The sp3-hybridized S atoms have demonstrated remarkable capability as halogen bond acceptors, suggesting that ligand-based interactions might compete with or even override metal-based effects.44 This raises a fundamental question that challenges the metal-centric approach: can ligand environments be strategically designed to mask inherent metal-specific differences? Such capability would represent a shift from metal-directed to ligand-controlled assembly, enabling creation of structurally predictable materials regardless of metal identity—a principle we term “metal identity masking”.
The relative influence of metal identity versus ligand compensation effects remains poorly understood, particularly in systems where multiple NCIs compete. Metal dithiocarbamate complexes provide an ideal platform for investigating these issues due to their versatile coordination capabilities and ability to stabilize group 10 metals in square-planar geometries.45,46 The group 10 metal series (Ni, Pd, Pt) was deliberately selected for this investigation because these metals form square-planar dithiocarbamate complexes with identical coordination geometry, producing isostructural cocrystals that allow for systematic evaluation of metal-centered electronic effects within an essentially invariant supramolecular framework. This design choice enables clear isolation of electronic effects from structural variables.
In this work, we address this fundamental question by investigating cocrystallization behavior of group 10 metal dithiocarbamates [M(S2CNEt2)2] (M = Ni, Pd, Pt) with 1,2,4,5-tetracyanobenzene (TCB) (Fig. 1). Through systematic variation across the Ni–Pd–Pt triad while maintaining identical ligand environments, we probe whether ligand-based interactions can neutralize metal-specific electronic differences that conventionally govern such assemblies.
 |
| | Fig. 1 Studied coformers. | |
Our findings reveal unexpected structural resilience that fundamentally challenges the metal-centric model of organic–inorganic assembly. Despite fundamental differences in dz2-orbital nucleophilicity across the Ni–Pd–Pt series—differences that typically produce distinctly different structural outcomes—all cocrystals maintain identical parallel-displaced supramolecular architectures. We demonstrate that S atoms from dithiocarbamate ligands actively neutralize inherent metal-specific properties through a sulfur-mediated self-compensating mechanism (i.e. mutual electronic compensation between sulfur donor atoms and the metal center, which effectively masks metal-specific electronic characteristics in the resulting supramolecular assemblies), creating electronically equivalent {MS4} building blocks. This establishes ligand-mediated metal identity masking as a design principle for creating structurally predictable metal-involving materials regardless of metal center, enabling a shift from metal-directed to ligand-controlled supramolecular assembly.
2. Results and discussion
2.1. Cocrystals growth and X-ray structures
Despite systematic variation of metal identity across the Ni–Pd–Pt triad, the resulting cocrystals demonstrate remarkable structural resilience, maintaining nearly identical supramolecular architectures. Dithiocarbamate complexes 1–4 were cocrystallized with TCB in a 1
:
1 molar ratio. The cocrystals were formed by slow evaporation of their solutions at room temperature (RT) (for detailed procedures refer to the Experimental section 4.2). This process yielded cocrystals designated as (1–4)·TCB. The structures of these cocrystals were analyzed using single-crystal X-ray diffractometry (XRD; for details refer to the Experimental section 4.3) and the resulting structural data are presented in Fig. 2 and Fig. S1–S4 (the SI).
 |
| | Fig. 2 Fragment of crystal packing of 1·TCB (left panel), 2·TCB (middle panel), and 3·TCB (right panel), demonstrating parallel-displaced alternating stacking of 1 (2, or 3) and TCB. Intermolecular metal⋯C short contacts are shown by dotted lines. | |
We found that among all obtained cocrystals, only 3·TCB displays room-temperature photoluminescence with an emission maximum at 623 nm, while both the isolated complex 3 and other cocrystals show no emission under ambient conditions. Given the modest quantum yield (0.6%), we note this unique emergent property for potential future investigations into supramolecular assembly effects on photophysical behavior, with characterization provided in section S2 of the SI, whereas experimental details provided in section 4.5.
The crystal structures of 1·TCB, 2·TCB, and 3·TCB are isomorphic, exhibiting similar cell parameters and packing motifs (Fig. 2 and Table S1 in the SI). This structural preservation across different metal centers challenges the conventional expectation that metal identity should be the primary structure-directing factor in such assemblies. All these structures comprise seven crystallographically independent units: three TCBs, two complete molecules of 1 (or 2, 3), and two halves of 1 (or 2, 3). Each crystallographically independent molecule is designated by a unique letter code, as shown in Fig. 2. In contrast, 4·TCB consists of one complete molecule of 4, two halves of 4, and two TCBs.
The structures of (1–4)·TCB display similar supramolecular organization: infinite parallel-displaced stacks composed of alternating metal complex and TCB molecules. This consistent stacking behavior, maintained despite metal variation, suggests that ligand-based interactions effectively compensate for inherent metal-specific differences. Within these stacks, the molecules are linked via C⋯M, C⋯S, and CCN⋯CS2C short contacts. The prevalence of C⋯S contacts indicates the significant role of S atoms in mediating intermolecular NCIs. Additionally, in 4·TCB, NCN⋯HCH hydrogen bonds are present. Molecules from neighboring stacks are interconnected through C–H⋯NCN and C–H⋯S hydrogen bonds.
The observed structural similarities across the metal series provide the first indication of a sulfur-mediated compensating mechanism that masks metal identity effects, setting the stage for detailed analysis of the underlying NCIs (section 2.3).
2.2. Noncovalent interactions in the structures of (1–4)·TCB
Analysis of the NCI patterns reveals how S-mediated compensation operates at the molecular level to achieve structural resilience across different metal centers.
Despite similarities in their structure–determining NCIs, the crystallographically independent units in 1·TCB, 2·TCB, and 3·TCB exhibit varying geometric parameters for these contacts. In the structures of (1–4)·TCB, metal complexes and TCB molecules are primarily linked by one Carene⋯M, two Carene⋯SS2C, and two CCN⋯CS2C contacts (Fig. 3 and S5–S7). The consistent presence of multiple C⋯S contacts across all structures underscores the pivotal role of S atoms in maintaining uniform intermolecular interactions regardless of metal identity. Slightly different motifs were found in 1·TCB, 2·TCB and 3·TCB: two Carene⋯SS2C contacts involve two para-C atoms of the TCB ring (Fig. 3 and S5–S7). In 4·TCB, the stacking occurs via one (C,Carene)⋯M, one Carene⋯SS2C, one CCN⋯CS2C, and one CCN⋯SS2C contact (Fig. S4 and S7). The parameters of these structure-directing contacts are collected in Tables 1 and 2.
 |
| | Fig. 3 Stacking in the molecular structure of 1·TCB. Short contacts are shown by dotted lines. | |
Table 1 Parameters of intermolecular contacts between the stacked complex and TCB in the structures of (1–4)·TCB
| Contacting atoms |
Carene⋯M, Å |
Carene/CN⋯SS2C, Å |
CCN⋯CS2C, Å |
|
1
·TCB
|
|
1·TCB-A |
Ni1⋯C8A 3.4933(17) |
S1⋯C7A 3.7272(17) |
C1⋯C6A 3.375(2) |
| S3⋯C9A 3.7413(17) |
C6⋯C10A 3.532(2) |
|
1·TCB-B |
Ni1⋯C3B 3.3175(17) |
S2⋯C2B 3.6844(17) |
C1⋯C1B 3.381(2) |
| S4⋯C4B 3.7124(17) |
C6⋯C5B 3.465(2) |
|
1-C·TCB-B |
Ni1C⋯C8B 3.3951(17) |
S1C⋯C7B 3.8438(17) |
C1C⋯C6B 3.389(2) |
| S3C⋯C9B 3.7286(17) |
C6C⋯C10B 3.424(2) |
|
1-C·TCB-D |
Ni1C⋯C3D 3.3326(17) |
S2C⋯C2D 3.6398(17) |
C1C⋯C1D 3.313(2) |
| S3C⋯C9B 3.7820(17) |
C6C⋯C5D 3.425(2) |
|
1-E·TCB-A |
Ni1E⋯C3A 3.4456(17) |
S2E⋯C7A 3.6208(17) |
C1E⋯C1A 3.546(2) |
| S3C⋯C9B 3.7082(17) |
C6C⋯C5D 3.495(2) |
|
1-F·TCB-D |
Ni1F⋯C8D 3.660(17) |
S1F⋯C7D 3.8332(17) |
C1F⋯C6D 3.448(2) |
| S2F⋯C9D 3.7395(17) |
C1F⋯C10D 3.369(2) |
|
2
·TCB
|
|
2·TCB-A |
Pd1⋯C8A 3.515(3) |
S1⋯C7A 3.758(3) |
C1⋯C6A 3.417(4) |
| S3⋯C9A 3.727(3) |
C6⋯C10A 3.512(4) |
|
2·TCB-B |
Pd1⋯C3B 3.338(3) |
S2⋯C2B 3.677(3) |
C1⋯C1B 3.386(4) |
| S4⋯C4B 3.759(3) |
C6⋯C5B 3.513(4) |
|
2-C·TCB-B |
Pd1C⋯C8B 3.403(3) |
S1C⋯C7B 3.858(3) |
C1C⋯C6B 3.416(4) |
| S3C⋯C9B 3.707(3) |
C6C⋯C10B 3.418(4) |
|
2-C·TCB-D |
Pd1C⋯C3D 3.353(3) |
S2C⋯C2D 3.620(3) |
C1C⋯C1D 3.310(4) |
| S3C⋯C9B 3.826(3) |
C6C⋯C5D 3.473(4) |
|
2-E·TCB-A |
Pd1E⋯C3A 3.463(3) |
S2E⋯C7A 3.580(3) |
C1E⋯C5A 3.524(4) |
| S1E⋯C9A 3.756(3) |
C1E⋯C1A 3.541(4) |
| S1E⋯C4A 3.738(3) |
|
2-F·TCB-D |
Pd1F⋯C8D 3.381(3) |
S2F⋯C7D 3.838(3) |
C1F⋯C6D 3.477(4) |
| S1F⋯C9D 3.721(3) |
C1F⋯C10D 3.378(2) |
|
3
·TCB
|
|
3·TCB-A |
Pt1⋯C8A 3.536(4) |
S1⋯C7A 3.773(4) |
C1⋯C6A 3.435(6) |
| S4⋯C4A 3.603(4) |
C6⋯C10A 3.531(6) |
|
3·TCB-B |
Pt1⋯C3B 3.345(4) |
S2⋯C2B 3.681(4) |
C1⋯C1B 3.398(6) |
| S3⋯C4B 3.775(4) |
C6⋯C5B 3.514(6) |
| S1⋯C1B 3.546(4) |
|
3-C·TCB-B |
Pt1C⋯C8B 3.409(4) |
S1C⋯C7B 3.856(4) |
C1C⋯C6B 3.426(6) |
| S3C⋯C9B 3.712(4) |
C6C⋯C10B 3.418(6) |
|
3-C·TCB-D |
Pt1C⋯C3D 3.361(4) |
S2C⋯C2D 3.627(4) |
C1C⋯C1D 3.320(6) |
| S3C⋯C9B 3.827(4) |
C6C⋯C5D 3.491(6) |
|
3-E·TCB-A |
Pt1E⋯C3A 3.482(4) |
S1E⋯C1A 3.498(4) |
C1E⋯C5A 3.550(6) |
| S2E⋯C5A 3.667(4) |
C1E⋯C5A 3.568(6) |
|
3-F·TCB-D |
Pt1F⋯C8D 3.386(4) |
S1F⋯C9D 3.730(4) |
C1F⋯C6D 3.494(6) |
| S2F⋯C7D 3.843(4) |
C1F⋯C10D 3.387(6) |
|
4
·TCB
|
|
4·TCB-A |
Ni1⋯C3A 3.5421(18) |
S2⋯C2A 3.7853(18) |
C1⋯C1A 3.532(3) |
| S4⋯C4A 3.6664(18) |
C6⋯C10A 3.322(3) |
|
4·TCB-B |
Ni1⋯C3B 3.4707(18) |
S2⋯C7B 3.7598(18) |
C1⋯C1B 3.851(3) |
| S4⋯C9B 3.4484(18) |
C8⋯C5B 3.320(3) |
|
4-C·TCB-A |
Ni1C⋯C4A 3.4506(17) |
S1C⋯C7A 3.5472(18) |
C1C⋯C1A 3.468(3) |
| Ni1C⋯C3A 3.5303(17) |
S2C⋯C10A 3.7667(19) |
|
4-D·TCB-B |
Ni1D⋯C4B 3.7012(18) |
S1D⋯C2B 3.5281(19) |
C1D⋯C6B 3.645(3) |
| Ni1D⋯C9B 3.7160(18) |
S2D⋯C5B 3.5268(19) |
Table 2 Angular stacking parameters in (1–4)·TCB
| Structure |
MS4/C6 plane-to-plane fold angle, ° |
|
1
·TCB
|
|
1·TCB-A |
5.99(4) |
|
1·TCB-B |
15.13(4) |
|
1-C·TCB-B |
15.80(4) |
|
1-C·TCB-D |
17.99(4) |
|
1-E·TCB-A |
6.25(4) |
|
1-F·TCB-D |
17.10(4) |
|
2
·TCB
|
|
2·TCB-A |
3.82(7) |
|
2·TCB-B |
13.26(7) |
|
2-C·TCB-B |
13.75(7) |
|
2-C·TCB-D |
15.91(7) |
|
2-E·TCB-A |
4.58(7) |
|
2-F·TCB-D |
14.73(7) |
|
3
·TCB
|
|
3·TCB-A |
3.19(10) |
|
3·TCB-B |
13.18(10) |
|
3-C·TCB-B |
13.29(10) |
|
3-C·TCB-D |
15.57(10) |
|
3-E·TCB-A |
4.28(10) |
|
3-F·TCB-D |
14.30(10) |
|
4
·TCB
|
|
4·TCB-A |
1.42(4) |
|
4·TCB-B |
7.42(5) |
|
4-C·TCB-A |
3.72(5) |
|
4-D·TCB-B |
2.76(4) |
Despite the similarities in NCI patterns across all four cocrystals, the lengths of these contacts vary significantly. However, these variations do not translate into fundamentally different supramolecular architectures, demonstrating the self-compensating nature of the interaction network. In the structures of 1·TCB and 4·TCB, the distances Ni⋯C (3.32–3.50, 3.42, and 3.45–3.72 Å, respectively) and also Pd⋯C separation in 2·TCB (3.34–3.52 Å) are greater than or on the borderline of Bondi van der Waals radii sum (∑BvdWNi + C and ∑BvdWPd + C = 3.33 Å), but noticeable smaller than Alvarez van der Waals radii sum (∑AvdWNi + C = 4.17 Å, ∑AvdWPd + C = 3.92 Å).
In 3·TCB, Pt⋯C separations (3.35–3.54 Å) lie close around to Bondi van der Waals radii sum (∑BvdWPt + C = 3.45 Å) and smaller than Alvarez van der Waals radii sum (∑AvdWPt + C = 4.06 Å). The relatively narrow range of M⋯C distances across the Ni–Pd–Pt series (3.32–3.72 Å) suggests that the ligand environment effectively normalizes metal-specific electronic differences.
In (1–4)·TCB, almost all CCN⋯CS2C separations (3.31–3.85 Å) are close to the borderline of ∑BvdWC + C (3.40 Å) or ∑AvdWC + C (3.54 Å). The Carene/CN⋯SS2C intraatomic distances (Table 1) are rather long (∑BvdWC + S = 3.50 Å; ∑AvdWC + S = 3.66 Å) and such comparison indicates that these interactions are quite weak. Despite their individual weakness, the cumulative effect of multiple C⋯S contacts appears to provide sufficient stabilization to maintain consistent stacking patterns across all metal variants. Analysis of interatomic distances reveals that the formation of infinite alternating stacks is primarily determined by two major components: (i) arene carbon-centered π-hole interactions between TCB and the metal; (ii) and π-CCN-hole interactions between TCB and the nucleophilic sites of the dithiocarbamate ligand.
In the stacks, the alternating metal complexes and TCB molecules are parallel-displaced but not perfectly coplanar. The angles of deviation between these planes, listed in Table 2, are relatively small. This deviation appears to correlate qualitatively with the steric hindrance of the amide substituent in the dithiocarbamate ligand. 1·TCB, 2·TCB, and 3·TCB, featuring the Et2N group, exhibit greater deviations as compared to 4·TCB, which bears the cyclic substituent C6H12N.
In different subunits of 4, the bulky cyclic substituents C6H12N exhibit varying orientations relative to the NiS4 coordination plane. Specifically, two subunits (denoted as 4-C and 4-D, Fig. S4) have their amide groups oriented in opposite directions relative to the coordination plane; one subunit (4, Fig. S4) has both amide groups located on the same side of the plane (Fig. S4). These different orientations of the bulky amide substituents in 4, 4-C, and 4-D result in substantially different NCIs between the various subunits of 4 and TCB.
Despite observed differences in supramolecular packing motifs, all five structures exhibit similar extended parallel-displaced stacks of alternating complexes and TCB molecules. These stacks are held together by several types of noncovalent contacts. Among these, the most common types are M⋯C (M = Ni, Pd, Pt) and CCN⋯CS2C interactions. The prevalence of S-involving interactions across all structures provides experimental evidence for the metal identity masking mechanism proposed in this work.
To better understand the formation of these supramolecular aggregates, and to elucidate the electronic basis of the observed structural resilience, we theoretically examined the nature and energetic contributions of these contacts. This analysis focused on three isomorphic structures, 1·TCB, 2·TCB, and 3·TCB (section 2.3).
2.3. Theoretical considerations
To understand the electronic basis of the observed structural resilience and to quantify the sulfur-mediated self-compensating mechanism that masks metal identity differences, comprehensive theoretical calculations of (1–3)·TCB have been performed (for details refer to the Experimental section 4.4). The part of stacks bearing three metal complex molecules and two TCB molecules were selected as computational models. Full geometry optimization of these supramolecular clusters preserved the general stacking structure. This computational validation of the experimental stacking motifs confirms that the observed structural similarities reflect intrinsic energetic preferences rather than crystal packing artifacts.
All organic and inorganic planar molecules became nearly parallel to each other in the optimized structures, and the average distances between planes formed by TCB and a metal complex slightly decreased from 3.7–3.9 to 3.3–3.4 Å. The consistent optimization outcomes across different metal centers provide computational evidence for the ligand-controlled assembly mechanism, where the dithiocarbamate environment effectively homogenizes the electronic properties of the {MS4} units regardless of metal identity.
2.3.1. Quantum theory of atoms in molecules (QTAIM) analysis.
The topological analysis of the electron density distribution indicates several bond critical points (BCPs) which correspond to the Ni(Pd,Pt)⋯C, S⋯C and N⋯H interactions between the central complex 1 (2 or 3) and two TCB molecules at each side (Fig. 4 and S10). The narrow range of these topological parameters across the Ni–Pd–Pt series suggests that the ligand environment successfully normalizes the electronic characteristics of metal-involving interactions, creating functionally equivalent {MS4} building blocks. The relatively low values of the electron density, ρb, (0.0042–0.0108 au) and kinetic and potential energy densities, Gb and Vb, (0.0034–0.0066 and −0.0023–(−0.0059) au, respectively) at the BCPs and positive Laplacian values, ∇2ρb, (0.0174–0.0326 au) are typical for weak noncovalent interactions (Table S2). This corroborates with results of the electron localization function (ELF) analysis which reveal the ELF values between the metal complex and TCB molecules lower than 0.1 (Fig. 4B). The ρb values are similar for all types of the short contacts being slightly higher for the S⋯C ones. Several cage critical points which are one of the indicators of the π⋯π stacking interactions were also found (Fig. 4A).
 |
| | Fig. 4 Bond paths with bond (yellow) and cage (green) critical points (A), ELF distribution (B), sign(λ2)ρ(r) function mapped on the δginter isosurface (δginter = 0.004 au and blue-cyan-green-yellow-red color scale −0.015 < sign(λ2)ρ(r) < 0.015, the atoms of Ni, S, N, C and H are in green, yellow, blue, gray and light gray, respectively) (C), scatter map of the IGMH δgatom signatures for the Ni (red), sulfur (blue), thiocarbamate carbon (green), nitrogen (pink) atoms and ethyl groups (black) (D) and overall atomic percentage contribution in the 1⋯TCB interactions (blue-cyan-green-yellow-red color scale, blue corresponding to 0% and red corresponding to 15%) (E) in the optimized structure of 1·TCB. | |
2.3.2. Independent gradient model (IGM) analysis.
This analysis in the IGMH version demonstrates the extended regions of the negative sign(λ2)ρ(r) function on the δginter isosurface and, thus, confirms the multiple attractive interactions between the metal complex and TCB which involve the whole these molecules (Fig. 4C and S11). To estimate the relative contribution of individual atoms of the metal complexes in the interactions with TCB, the δgatom signatures were calculated. The δgatom descriptor is the sum of all paired contributions of a given atom of one molecule with all atoms of another molecule. The δgatom signatures for different atoms are completely overlapped on the scatter map of δgatomversus the sign(λ2)ρ(r) function (Fig. 4D and S12). In 1·TCB, the S⋯TCB and Et⋯TCB interactions are characterized by the higher δgatom maximum values than other interactions including the metal⋯TCB ones. Correspondingly, the S⋯C interactions represent three paired interactions with the highest percentage contribution (Table 3). In 2·TCB and 3·TCB, δgatom of Et⋯TCB and metal⋯TCB are predominant, and the highest percentage contribution corresponds to the metal⋯C paired interaction. The progressive shift from S-dominated interactions in the Ni system to metal dominant interactions in the Pd and Pt systems illustrates the adaptive nature of the compensating mechanism across the metal series.
Table 3 Highest atomic pair and overall atomic contributions (%) in the interactions of complexes 1–3 with two TCB molecules (optimized structures)
| Atomic pair percentage contributions |
Overall atomic percentage contribution |
| Contact |
% |
Contact |
% |
Atom |
% |
Atom |
% |
|
1
·TCB
|
| S⋯C |
1.21 |
Ni⋯C |
1.03 |
Ni |
14.77 |
S |
8.02 |
| S⋯C |
1.13 |
S⋯C |
1.03 |
S |
10.17 |
C |
5.50 |
| S⋯C |
1.09 |
S⋯C |
1.01 |
S |
9.98 |
C |
5.36 |
| Ni⋯C |
1.09 |
S⋯C |
1.00 |
S |
8.11 |
H |
2.63 |
|
2
·TCB
|
| Pd⋯C |
1.75 |
Pd⋯C |
1.12 |
Pd |
13.92 |
S |
7.22 |
| S⋯C |
1.22 |
Pd⋯C |
1.08 |
S |
11.36 |
C |
5.51 |
| S⋯C |
1.17 |
S⋯C |
1.07 |
S |
10.17 |
C |
5.47 |
| Pd⋯C |
1.13 |
N⋯H |
1.03 |
S |
7.95 |
H |
3.03 |
|
3
·TCB
|
| Pt⋯C |
1.71 |
N⋯H |
1.04 |
Pt |
15.87 |
S |
7.17 |
| S⋯C |
1.22 |
S⋯C |
1.04 |
S |
10.72 |
C |
5.37 |
| Pt⋯C |
1.15 |
Pt⋯C |
1.03 |
S |
9.97 |
C |
5.29 |
| Pt⋯C |
1.13 |
N⋯H |
1.02 |
S |
8.07 |
H |
2.79 |
Meanwhile, the metal atom has the highest overall percentage contribution in the interactions between the metal complexes and TCB (13.9–15.9%) followed by the S atoms (7.2–11.4%) (Fig. 4E and Table 3). This indicates that the metal atoms play an important role in construction of supramolecular architecture of the cocrystals under study. Meanwhile, the narrow range of metal contributions of 2% suggests the ligand-controlled assembly mechanism in creating structurally resilient supramolecular systems.
2.3.3. Electrostatic potential (ESP).
One of the most important factors which governs intermolecular NCIs is the electrostatic factor. The ESP distribution in molecules 1–3, and TCB demonstrates the presence of an extensive zone of the negative potential above the {MS4} moiety of the metal complexes and the region of the positive potential above the phenyl ring of TCB (Fig. 5 and S13). Additionally, ESP is positive around the ethyl groups of the dithiocarbamate ligands in 1, 2 and 3 and it is negative at the terminus of the nitrile groups of TCB. Such a distribution perfectly explains the π⋯π stacking interaction between the metal complexes and TCB molecules from electrostatic viewpoint.
 |
| | Fig. 5 Distribution of ESP in the optimized structures of 1 (top panel) and TCB (bottom panel) (electron density isosurfaces 0.002 au, blue-cyan-green-yellow-red color scale from −0.05 to 0.05). | |
2.3.4. Charge transfer (CT).
Another factor which may provide some contribution to the intermolecular NCIs is charge transfer. Analysis of the natural bond orbitals (NBOs) demonstrates that CT is quite weak for the co-crystals under study. The 1(2,3) → TCB charge transfer mostly involves the LP(S) → π*(CC/CN) transitions with the total second-order perturbation energy E(2) of 5.3–8.1 kcal mol−1 for the interactions of the metal complex with two TCBs at both sides. The TCB → 1(2,3) back-CT is even lower with the total E(2) value of 2.6–6.7 kcal mol−1 for the LP(N) → π*(CC)/σ*(CH) and π(CN/CC) → π*(CN/CC) transitions. The overall NBO charge on the central metal complex in the model cluster is +0.09e for 1, +0.07e for 2 and +0.08e for 3 indicating the general charge transfer from the metal complexes to TCB.
The electron density difference (EDD) distribution in the M(1)M(2)N(1) and S(1)S(2)S(3) planes of cocrystals demonstrates some increase of the electron density between the metal or sulfur atoms of the central complex and the TCB molecule (Fig. 6 and S14). However, the integrated charge displacement function (CDF) shows only small 1(2) → TBC CT at the isoboundary line between these molecules (3 me for 1 and 6 me for 2). For cocrystal 3·TCB, very weak TBC → 3 CT was found at the isoboundary line (2 me). The low CT in the systems under study mitigates the importance of the dz2 orbital nature in the NCIs.
 |
| | Fig. 6 EDD contour plots for the Ni(1)Ni(2)N(1) (top panel) and S(1)S(2)S(3) (bottom panel) planes (isovalues from −0.01 to 0.01 au, red solid contours – charge concentration, blue dashed contours – charge depletion, atomic numbering from Fig. 4A) and CDF function along the Ni(1)Ni(2) axis (top panel) in the optimized structure 1·TCB (the gray vertical lines identifies the boundary between two molecules). | |
The extended transition state-natural orbital for chemical valence (ETS-NOCV) method allows the calculation of individual orbital interaction contributions in EDD. This analysis shows that the main type of the orbital interactions responsible for CT corresponds mostly to the S → C transitions which are mixed with the metal → C transitions in 2·TCB and 3·TCB (Δρ1 and Δρ2, Fig. 7 and S15, S16). The orbital energy of both these NOCV pairs is −4.9, −3.8 and 3.9 kcal mol−1 for 1·TCB, 2·TCB and 3·TCB, respectively, that comprises 16.9, 23.7 and 22.9% of the total orbital interaction energy (Table 4). Another intermolecular orbital interaction revealed by this analysis is the metal → C transition (Δρ5 for 1⋯TCB and Δρ3 for 2⋯TCB and 3⋯TCB) with the energy of −1.0–(−1.4) kcal mol−1 and contribution to ∑Eorbint of 3.4–8.2%. Other two NOCV pairs among five the most energetic ones correspond to the intramolecular CT within 1, 2 or 3. The metal involvement in CT slightly increases from M = Ni to Pd and then to Pt.
 |
| | Fig. 7 ETS-NOCV deformation densities for the optimized structure 1·TCB (electron transfer occurs from the zones of the charge density depletion (cyan) to those of the charge density concentration (green), isovalues ±0.0001 au for Δρ1–Δρ5 and ±0.0006 au for Δρtotal). | |
Table 4 Charge transfer types corresponding to the first five NOCV pairs with the paired orbital interaction energies (Eorbint, kcal mol−1) and their percentage contribution in the total orbital interaction energy for the optimized structures 1·TCB, 2·TCB, and 3·TCB
| Structure |
NOCV |
E
orbint (%) |
|
1·TCB |
Δρ1: LP(S) → π*(CC) |
−3.4 (11.7) |
| Δρ2: LP(S) → π*(CC) |
−1.5 (5.2) |
| Δρ3: intramolecular |
−1.2 (4.1) |
| Δρ4: intramolecular |
−0.8 (2.8) |
| Δρ5: dz2(Ni) → π*(CC) |
−1.0 (3.4) |
|
2·TCB |
Δρ1: LP(S) → π*(CC) |
−2.1 (13.1) |
| Δρ2: LP(S) → π*(CC) |
−1.7 (10.6) |
| Δρ3: dz2(Pd) → π*(CC) |
−1.1 (6.9) |
| Δρ4: intramolecular |
−1.0 (5.6) |
| Δρ5: intramolecular |
−0.8 (5.0) |
|
3·TCB |
Δρ1: LP(S)/dxy(Pt) → π*(CC) |
−2.3 (13.5) |
| Δρ2: LP(S)/dz2(Pt) → π*(CC) |
−1.6 (9.4) |
| Δρ3: dz2(Pt) → π*(CC) |
−1.4 (8.2) |
| Δρ4: intramolecular |
−1.0 (5.8) |
| Δρ5: intramolecular |
−0.9 (5.3) |
2.3.5. Interaction energy.
The energy of interaction between the central complex 1(2,3) in the model cluster and both TCB⋯1(2,3) fragments (Eint) was calculated in accord with procedure described in Computational details section. The calculated BSSE-corrected values are −40.6, −41.7, and −42.8 kcal mol−1 for cocrystals 1·TCB, 2·TCB, and 3·TCB, respectively. This corresponds to quite efficient interactions between the metal complex and TCB due to multiple contacts forming the π⋯π stacking. The remarkably narrow range of the interaction energies across the Ni–Pd–Pt triad once again confirms the proposed self-compensating mechanism, where ligand-mediated effects successfully mask the inherent d-orbital differences that would otherwise lead to significantly different binding strengths.
The interaction energy was then decomposed into its electrostatic (Eele), exchange and repulsion (Eexrep), polarization (Epol), dispersion (Edisp) and electron correlation (Ecorr) components using the generalized Kohn–Sham energy decomposition analysis (GKS-EDA) (Table 5). The results indicate that the dominant components in the interactions are electrostatic and dispersion ones together comprising approx. 67% of the attractive part of Eint regardless of metal identity. The polarization term including charge transfer is although visible but clearly less significant (10–11% of contribution). This energetic uniformity demonstrates that the dithiocarbamate ligand environment successfully homogenizes the fundamental interaction mechanisms, creating functionally equivalent {MS4} units that exhibit identical assembly behavior despite containing metals with fundamentally different electronic properties. This energetic equivalence provides the mechanistic foundation for the observed structural resilience and supports the paradigm shift from metal-directed to ligand-controlled supramolecular assembly.
Table 5 Calculated interaction energies between 1(2,3) and two TCB molecules (Eint) and their decomposition to principal components (in kcal mol−1)
| Structure |
ΔEele |
ΔEexrep |
ΔEpol |
ΔEdisp |
ΔEcorr |
E
int
|
|
1·TCB |
−38.6 |
71.0 |
−11.0 |
−36.4 |
−25.3 |
−40.2 |
|
2·TCB |
−37.1 |
67.0 |
−11.5 |
−36.4 |
−23.6 |
−41.6 |
|
3·TCB |
−39.5 |
71.1 |
−13.0 |
−37.4 |
−23.9 |
−42.7 |
3. Conclusions
This work demonstrates a novel approach to controlling supramolecular assembly through systematic compositional variations in hybrid organic–inorganic systems. Using group 10 metal dithiocarbamate-TCB cocrystals as a model platform, we reveal design principles that provide a foundation for engineering robust metal-involved flat supramolecular systems.
Our key discovery is the unexpected structural resilience exhibited by these metal-containing assemblies. Despite systematic variations across the Ni–Pd–Pt triad, the cocrystals maintain virtually identical stacking motifs. This contradicts expectations based on the previous studies of hybrid organic–inorganic flat assemblies that d-orbital nucleophilicity differences are the principal structure-directing force for such assemblies.
Comprehensive quantum chemical analysis reveals the underlying mechanism through sulfur-mediated electronic compensation. Independent gradient model calculations demonstrate substantial metal center contributions to intermolecular interactions (13.9–15.9%), confirming that d-orbital differences between group 10 metals are electronically distinct and this distinction is readily detectable. However, sulfur atoms from the dithiocarbamate ligands effectively neutralize this variation through a leveling effect that overwhelms inherent d-orbital differences. Consequently, the {MS4} units function as electronically equivalent building blocks, with S atoms masking metal-specific properties to produce identical stacking architectures regardless of metal identity.
Energy decomposition analysis reveals remarkably consistent energetic profiles across all systems—electrostatic and dispersion forces account for ∼70% of attractive interactions while charge transfer contributes minimally (∼10%). This energetic uniformity, enabled by sulfur-mediated compensation, explains the observed structural preservation: assembly forces remain constant because the ligand environment homogenizes electronic properties around different metal centers.
The broader significance extends beyond this specific system family. Our findings demonstrate that ligand environments can be strategically designed to either amplify or neutralize metal-specific properties in supramolecular assemblies. Understanding how ligand's donor atoms compensate for metal differences provides opportunities for creating metal-based materials with predictable assembly behavior.
4. Experimental section
4.1. General
1,2,4,5-Tetracyanobenzene and all solvents were obtained from commercial sources and used without further purification. Complexes 1–4 were synthesized according to literature procedures.39,47
4.2. Cocrystallization of 1–4 with TCB
A mixture of a metal complex (0.028 mmol) and TCB (0.056 mmol), placed in a closed vial, was dissolved in a dichloromethane
:
acetonitrile mixture (2.5
:
0.5 mL) on heating (approx. 40 °C) and ultrasonic treatment until TCB was completely dissolved (∼10 min). The formed mixture was filtered off from small amount of undissolved solid material through a PTFE syringe filter (0.45 μm). The filtrate was then left to stand at RT for slow evaporation. Dark brownish green crystals of (1,4)·TCB and yellow crystals of (2,3)·TCB suitable for XRD were obtained after 2–4 days.
4.3. X-ray structure determinations
XRD studies were performed at 100(2) K on a Rigaku XtaLAB Synergy-S (1·TCB and 4·TCB) and on a Rigaku Supernova (2·TCB and 3·TCB) diffractometers using CuKα (λ = 0.154184 nm) radiation. The structures were solved with the ShelXT48 structure solution program using intrinsic phasing and refined with the ShelXL49 refinement program using least-squares minimization. All these programs were incorporated in Olex2
50 program package. Hydrogen atoms in all structures were placed in ideally calculated positions determined according to the neutron diffraction statistical data51 and then refined as colliding atoms with the parameters of relative isotropic displacement. Table S1 provide an overview of the crystal structures and refinement data. All structures have been deposited at Cambridge Crystallographic Data Centre (CCDC numbers 2482470–2482473).
4.4. Computational details
Full geometry optimization of the structures was carries out at the DFT level of theory with the PBE0 functional52,53 and the atom-pairwise dispersion correction with the Becke–Johnson damping scheme D3BJ.54,55 The Gaussian 09 program package56 was used. Cartesian d and f basis functions (6d, 10f) were used in all calculations. The def2-SVP basis set was used for the geometry optimization while the def2-TZVP basis set57 with the Douglas–Kroll–Hess second-order scalar relativistic correction (DKH)58,59 was applied in following single point calculations for the analyses of the intermolecular bonding nature.
The topological analysis of the electron density distribution with help of the AIM method of Bader60,61 was performed using the program AIMAll.62 The ELF,63,64 IGMH,65,66 EDD, CDF67 and ETS-NOCV68 analyses were performed using the Multiwfn 3.8
69 and VMD70 software. Such studies represent a toolbox of different bonding descriptors and have been termed as complementary bonding analysis.71 The bond orbital nature was analyzed by using the NBO partitioning scheme.72 The GKS-EDA calculations73 were carried out at the PBE0-D3BJ/def2-TZVP level by using the GAMESS-US software (version 2021-R2 patch 1)74,75 with application of the XEDA patch.76,77
The interaction energies between the metal complex and TCB molecules in 1(2,3)⋯TCB⋯1(2,3)⋯TCB⋯1(2,3) model clusters were calculated as the energy difference Eint = E[1(2,3)⋯TCB⋯1(2,3)⋯TCB⋯1(2,3)] − E{1(2,3)}central − E{1(2,3)⋯TCB}left − E{1(2,3)⋯TCB}right where structures in square brackets are fully optimized while the structures in curly brackets have unrelaxed geometries. The basis set superposition error (BSSE) was estimated using the counterpoise method.78
4.5. Photophysical measurements
Emission spectrum of cocrystal 3·TCB (section S2, the SI) was measured on a Fluorolog 3 (Horiba Jobin Yvon) spectrofluorimeter, λex = 400 nm. The photoluminescence quantum yield was defined as the number of photons emitted per photon absorbed by the system and was measured with an integrating sphere by a reported method.79
Author contributions
Lev E. Zelenkov – methodology, investigation, conceptualization; Sergey V. Baykov – conceptualization, formal analysis, funding acquisition, writing – original draft; Maxim L. Kuznetsov – methodology, data curation, resources, writing – original draft; Evgeny Kh. Sadykov – investigation, formal analysis; Pavel V. Nikulshin – investigation; Eugene V. Ignatov – investigation, writing – original draft; Nadezhda A. Bokach – conceptualization, supervision, project administration, writing – review & editing; Vadim Yu. Kukushkin – conceptualization, methodology, supervision, writing – review & editing.
Conflicts of interest
There are no conflicts to declare.
Data availability
The data available within the article or its SI can be provided in raw format upon request.
Supplementary information (SI) is available: X-ray diffraction studies, Photophysical Properties and Measurements, Calculation details. See DOI: https://doi.org/10.1039/d5qi01980j.
CCDC 2482470–2482473 ((1–4)·TCB) contain the supplementary crystallographic data for this paper.80a–d
Acknowledgements
Authors thank the Russian Science Foundation for support of this study (project no. 22-73-10031-P). X-ray diffraction experiments were performed at the Center for X-ray Diffraction Studies of Saint Petersburg State University. Computational part of this work was supported by Fundação para a Ciência e a Tecnologia (FCT), Portugal, [UIDB/00100/2020 (https://doi.org/10.54499/UIDB/00100/2020), UIDP/00100/2020 (https://doi.org/10.54499/UIDP/00100/2020) of Centro de Química Estrutural and LA/P/0056/2020 (https://doi.org/10.54499/LA/P/0056/2020) of Institute of Molecular Sciences projects].
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(a)
CCDC 2482470: Experimental Crystal Structure Determination, 2025, DOI:10.5517/ccdc.csd.cc2pb6py;
(b)
CCDC 2482471: Experimental Crystal Structure Determination, 2025, DOI:10.5517/ccdc.csd.cc2pb6qz;
(c)
CCDC 2482472: Experimental Crystal Structure Determination, 2025, DOI:10.5517/ccdc.csd.cc2pb6r0;
(d)
CCDC 2482473: Experimental Crystal Structure Determination, 2025, DOI:10.5517/ccdc.csd.cc2pb6s1.
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