Wei-Hao
Huang
,
Teng-Yu
Mao
,
Guo-Yao
Dai
,
Jian-Mei
Ye
,
Jia-Bao
Li
,
Shuo-Bin
Chen
,
Jia-Heng
Tan
,
Zhi-Shu
Huang
and
Shi-Liang
Huang
*
School of Pharmaceutical Sciences, Guangdong Provincial Key Laboratory of New Drug Design and Evaluation, Sun Yat-sen University, Guangzhou 510006, China. E-mail: lsshsl@mail.sysu.edu.cn
First published on 18th November 2025
Heat shock protein (HSP) 70 represents a clinically promising anti-tumor target, yet the development of effective inhibitors faces numerous technical challenges. To address this, we developed novel non-ATP site Proteolysis-targeting Chimeras (PROTACs) that selectively degrade HSP70 by engaging the E3 ubiquitin ligase CRBN. However, the PROTACs exhibited limited degradation activity, potentially due to heat shock response-mediated HSP70 upregulation. To circumvent this resistance mechanism, we explored combination therapy with the heat shock factor 1 (HSF1) inhibitor DTHIB to disrupt the heat shock feedback loop, markedly enhancing HSP70 degradation. The combination strategy showed synergistic and selective anti-tumor activity across a panel of cancer cell lines. This success relied on the distinct profile of C4, which preferentially targets cytosolic HSP70 and, unlike conventional inhibitors, effectively circumvents compensatory HSP70 upregulation.
Proteolysis-targeting Chimera (PROTAC) technology offers a promising alternative by recruiting E3 ubiquitin ligases to ubiquitinate and degrade target proteins.14–16 This strategy overcomes key limitations of occupancy-driven inhibitors: it requires only transient target engagement (not necessarily high-affinity binding to functional sites) and reduces mutation-driven resistance by eliminating the target protein.17,18 Therefore, developing HSP70 degraders based on the PROTAC strategy is considered as a promising anti-tumor approach. Nonetheless, HSP70-targeted PROTAC therapy still faces major technical difficulties: (1) extremely high HSP70 abundance, particularly within the tumor microenvironment, may saturate degrader capacity. (2) Chronic HSP70 inhibition activates HSF1-mediated feedback, upregulating chaperone expression and diminishing long-term efficacy. (3) Traditional HSP70 ATP-site binders might exhibit binding affinity for other ATP-dependent targets; PROTACs might effectively degrade even low-affinity off-targets, potentially compromising selectivity. Combining HSP70 degraders with HSF1 inhibitors offers a strategy to address these issues. HSF1 inhibition blocks the HSP70 negative feedback loop, potentially enhancing anti-tumor efficacy. Furthermore, identifying non-ATP site HSP70 binders is critical for improving selectivity.
In this study, compound R17 was identified through DSF screening and confirmed as a non-ATP site HSP70 binder. Its derivatives were used as warheads to design and synthesize a series of small-molecule PROTACs capable of degrading HSP70. To enhance the degradation effect, the HSF1 inhibitor DTHIB was employed to block the heat shock feedback loop, aiming to achieve more effective suppression of HSP70 and provide a novel therapeutic strategy for tumor treatment.
Although over 600 E3 ligases exist, only about six are commonly used in PROTACs. Among these, CRBN,19,20 VHL,21 MDM2,22 and cIAP23 are the most widely applied. Thalidomide, as a ligand for the E3 ligase CRBN, is widely used in the design of PROTAC molecules due to its advantages such as low molecular weight and easy synthesis. Based on the differences in the type of substituent groups introduced at position 1 of thalidomide, as well as variations in the length and properties of the linker, we designed three series comprising a total of ten PROTAC compounds (Table 1 and Scheme 3):
| Comp. | A | R | Degradation ratea (%) | Cytotoxicityb (inhibition rate, %) | Synergistic cytotoxicityc (inhibition rate, %) |
|---|---|---|---|---|---|
| a The degradation rates of HSP70 were measured by western blot assay. Values were the means ± SEM of three independent experiments. b The effects of individual compounds (8 μM) on RKO cell viability after 48 h treatment. The inhibition rates are shown as means ± SEM of three independent experiments. c The effects of compounds (8 μM) in combination with DTHIB (4 μM) on RKO cell viability after 48 h treatment. The inhibition rates are shown as means ± SEM of three independent experiments. d n.d.: no degradation. | |||||
| A1 |
|
|
n.d.d | 9 ± 1 | 38 ± 4 |
| A2 |
|
|
n.d. | 6 ± 1 | 55 ± 4 |
| A3 |
|
|
n.d. | 12 ± 3 | 53 ± 6 |
| B1 |
|
|
21 ± 4 | 30 ± 5 | 78 ± 2 |
| B2 |
|
|
n.d. | 17 ± 3 | 57 ± 8 |
| B3 |
|
|
n.d. | 15 ± 1 | 56 ± 8 |
| C1 |
|
|
n.d. | 21 ± 3 | 66 ± 3 |
| C2 |
|
|
n.d. | 9 ± 2 | 50 ± 3 |
| C3 |
|
|
19 ± 1 | 5 ± 5 | 52 ± 1 |
| C4 |
|
|
56 ± 1 | 26 ± 4 | 78 ± 5 |
| DTHIB | — | — | 20 ± 3 | 44 ± 2 | — |
Series A: retained the R17N,N-dimethyl side chain and conjugated it to thalidomide via alkyloxy linkers using different diamines (N-(3-aminopropyl)-N-methylpropane-1,3-diamine, 3-(piperazin-1-yl) propan-1-amine, or N-methylpropane-1,3-diamine). This approach preserved the R17 structure while systematically investigating the effect of linker length on degradation activity.
Series B: utilized pomalidomide (a CRBN ligand) connected via amide linkers of varying alkyl chain lengths. This series aimed to assess the impact of removing the R17N,N-dimethyl side chain on HSP70 degradation activity.
Series C: employed alkyl or PEG chains as flexible linkers, replacing the amide bond with an alkylamine connection point, aiming to maximize linker flexibility, enhancing the opportunity for the protein of interest (POI) to engage the ubiquitin ligase complex.24
![]() | ||
| Scheme 1 The synthetic route for compound 3. (i) a. SOCl2, chloroform, 70 °C, 4 h. b. Pyridine, chloroform, 70 °C, 2 h; (ii) NaOH, EtOH, 70 °C, 2 h; (iii) POCl3, 120 °C, 6 h. | ||
As shown in Scheme 3, the synthetic routes for the three series of target compounds, A, B, and C, all started from 3, which underwent nucleophilic substitution with the –NH2 group of different linkers (L1–L5). The resulting intermediates were then treated with TFA to remove the Boc protecting group at the terminal end of the linker. Subsequent nucleophilic substitution or amide coupling with intermediates 6, 7, or 4a afforded the final compounds of series A, B, and C, respectively.
![]() | ||
| Scheme 3 The synthetic route for compound series A, B and C. (i) K2CO3, DMF, r.t., 2 h; (ii) TFA, DCM, r.t., 2 h; (iii) HATU, DIPEA, DMF, r.t., 2 h. (iv) NMP, DIPEA, 60 °C, 30 min. | ||
The negative control compound C4-Me, was synthesized analogously from methylation of 4a (Scheme 4).
![]() | ||
| Scheme 4 The synthetic route for the negative control compound. (i) Iodomethane, K2CO3, DMF, r.t., overnight; (ii) NMP, DIPEA, 60 °C, 30 min. | ||
The degradation efficiency of the synthesized PROTAC compounds on HSP70 and their cytotoxic activity against the RKO cell line were evaluated by western blot and CCK-8 assay, respectively. The results are shown in Fig. 2c and d and Table 1. The structure–activity relationships (SARs) of the synthesized HSP70-targeting PROTAC compounds revealed that the efficiency is highly dependent on the type of linker group attached to thalidomide and the properties and length of the linker. Compounds with alkylamine linkers (series C) exhibited the highest HSP70 degradation rates, with C4 reaching 56% degradation and exhibiting 26% cytotoxicity at 8 μM. Aminocarbonyl linkers (series B) showed weaker degradative activity (21% for B1) with a corresponding cytotoxicity of 21%. Alkoxy linkers (series A) exhibited almost no protein degradation and cytotoxicity. The optimal linker length appears to be 5–8 atoms, balancing flexibility and steric considerations, which is crucial for effective ternary complex formation and subsequent degradation. Additionally, the presence of heteroatoms or bulky groups in the linker can introduce geometric constraints or non-productive binding sites, potentially hindering complex formation and reducing both degradation efficiency and cytotoxicity. These findings have underscored the importance of linker composition and length in modulating the efficacy of PROTACs targeting HSP70.
Based on these results, compounds B1 and C4 were selected for further mechanistic investigation. Immunoblotting confirmed that R17 alone did not reduce intracellular HSP70 levels (Fig. 3a and b). The degradation efficiency of B1 and C4 against HSP70 was assessed at various concentrations after 48 h. B1 showed only weak activity (Fig. 3c and d), whereas C4 exhibited a concentration-dependent degradation effect (Fig. 3e and f). Time-course analysis revealed that treatment with 16 μM C4 led to noticeable HSP70 degradation after 48 h, with further reduction observed at 72 h (Fig. 3g and h). Importantly, the negative control C4-Me failed to induce HSP70 degradation at either 16 or 32 μM (Fig. 3i and j), supporting the conclusion that C4 mediates HSP70 degradation via recruitment of the E3 ubiquitin ligase through its thalidomide-derived moiety.
Co-expression of Flag-HSP70 and HA-Ub in RKO cells showed that C4 significantly increased HSP70 ubiquitination (Fig. 4g and h). Consistent with this, total ubiquitin levels also showed an upward trend (Fig. 4i and j), further supporting the induction of proteasome-dependent degradation. These data confirmed that C4 promotes ubiquitin-dependent degradation of HSP70 through a PROTAC-mediated mechanism.
Given the high sequence homology among HSP70 family members and their distinct roles in cellular processes, we evaluated the isoform selectivity of C4. As shown in Fig. 4k and l, C4 demonstrated degradation activity against cytosolic HSP70 isoforms HSP70α, HSP70β, HSP76 and BiP at 8 μM, respectively, but showed minimal effect on the endoplasmic reticulum (ER)-resident BiP. This selectivity correlates with the genetic homology: HSP70β shares >99% sequence identity with HSP70α, HSP76 shares ∼92%, while BiP shares only ∼81%. The observed differences likely reflect structural variations at the R17 binding site. Importantly, the preserved BiP function may help maintain a therapeutic window, as full disruption of ER proteostasis could cause significant toxicity in normal cells. Such isoform selectivity offers valuable guidance for optimizing HSP70-targeted therapies and supports the potential for isoform-specific targeting strategies.
Consistent with this hypothesis, RT-qPCR (Fig. 5a) showed that C4 treatment alone significantly upregulated HSP70 mRNA, reflecting activation of the heat shock feedback loop triggered by HSP70 degradation. This compensatory response substantially limits the efficacy of single-agent PROTAC therapy, as evidenced by the moderate degradation efficiency despite effective ternary complex formation. In contrast, RT-qPCR and immunoblotting (Fig. 5b and c) demonstrated that co-treatment with C4 and DTHIB markedly suppressed HSP70 transcription and enhanced its degradation relative to C4 alone, indicating that DTHIB effectively blocks HSF1-mediated feedback. We also directly compared C4 with representative ATP-competitive (VER-155008) and allosteric (MKT-077) HSP70 inhibitors. Both conventional inhibitors induced significant upregulation of HSP70 protein levels, consistent with the activation of the heat shock response pathway. Notably, DTHIB at 4 μM had minimal impact on HSP70 levels when administered alone, but in combination with C4, it strongly potentiated protein degradation. Similarly, as presented in Table 1, a synergistic cytotoxic effect was observed when the synthesized compounds were co-administered with DTHIB. This result indicates that the PROTAC-based strategy effectively circumvented the compensatory HSP70 upregulation that limits the efficacy of conventional inhibitors. This comparative analysis demonstrates that targeted protein degradation, particularly when combined with HSF1 inhibition, represents a superior strategy for overcoming the intrinsic resistance mechanisms associated with HSP70 targeting.
Cell growth inhibition assays using a high-content imaging system (Fig. 5d) further demonstrated that the combination of C4 and DTHIB strongly suppresses RKO cell proliferation in a concentration- and time-dependent manner. We expanded our evaluation to include two additional cancer cell lines (HL60 leukemia and HCT116 colon cancer) and one normal cell line (NCM460). Cell viability assays revealed a pronounced therapeutic window for the C4/DTHIB combination (Fig. 5e–g). Time-course analysis demonstrated that tumor cells exhibited accelerated cell death after 72 hours of combination treatment, consistent with proteostasis disruption, whereas normal cells showed minimal toxicity within the therapeutic window. Notably, DTHIB concentrations below 2 μM showed minimal synergistic activity across all cell lines, while the 4–8 μM range demonstrated a steep dose–response curve, corresponding to the concentration range required for effective disruption of the HSF1-mediated feedback loop.
To further evaluate the biological consequences of this combination treatment, we assessed apoptosis induction via immunoblotting and flow cytometry. Immunoblot analysis (Fig. 5h–k) showed that combined treatment led to a concentration-dependent decrease in full-length PARP and caspase-3, along with increased cleaved caspase-3, indicating enhanced apoptotic activity. Flow cytometry with PI/Annexin V staining (Fig. 5l–n) confirmed a significant increase in both early and late apoptotic cells following combination treatment, with an elevated PI signal suggesting an increase in mid-to-late-stage apoptosis. These findings collectively demonstrated that the combination of C4 and DTHIB synergistically enhance HSP70 degradation, suppress tumor cell proliferation, and effectively induce apoptosis.
Crucially, we show that combining C4 with the HSF1 inhibitor DTHIB significantly enhances its efficacy by disrupting the heat shock feedback loop, which otherwise limits HSP70 degradation. This synergistic combination not only improves degradation efficiency but also triggers robust antitumor effects in cancer cells.
Our results establish a new paradigm for targeting HSP70 and other feedback-regulated oncoproteins. Although C4 demonstrated moderate single-agent activity, our research provides a robust foundation for understanding the challenges and opportunities in HSP70-targeted therapy. Further optimization is needed to enhance C4's potency and pharmacological properties, particularly to improve its selectivity profile among HSP70 isoforms. Nonetheless, this work establishes a compelling proof-of-concept for a dual-targeting strategy that simultaneously degrades HSP70 and disrupts its compensatory feedback loop, offering a promising framework for overcoming tumor survival mechanisms and potentially applicable to other traditionally ‘undruggable’ targets with similar resistance mechanisms.
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