Open Access Article
Bharat
Kaushik
,
Ajeet
Singh
,
Annu
Agarwal
,
Nancy
Punia
and
Inamur Rahaman
Laskar
*
Department of Chemistry, Birla Institute of Technology and Science, Pilani Campus, Vidya Vihar, Pilani, Rajasthan 333031, India. E-mail: ir_laskar@pilani.bits-pilani.ac.in
First published on 7th March 2026
Methylmalonic acid (MMA) is a key biomarker for vitamin B12 deficiency, and its sensing via a turn-on-based fluorescence mechanism is less explored. The maximum efficiency reported corresponds to only a few-fold increase in the emission. Similarly, the mechanism by which the emission turns on remains unaccounted for. Here, we report an imidazole-based non-fluorescent probe, M1, which turns on blue fluorescence upon the addition of MMA due to the ‘analyte-triggered aggregation’ (ATA) mechanism. An aggregation of probe molecules is triggered by MMA, which is mediated by hydrogen bonding and electrostatic interactions between the probe molecules. The probe-analyte interactions and aggregation formation were corroborated by 1H NMR, FTIR, DLS, FESEM, zeta potential measurements, and density functional theory (DFT). The analyte triggered a fluorescence enhancement of the probe of 73-fold (the best reported yet), with an observed detection limit of 5.78 µM. M1 demonstrated excellent selectivity toward MMA over biological interfering elements commonly found in human urine. The scope of M1 in practical applications was validated by detecting MMA in real urine samples, achieving recovery rates of 95–108%. This work presents a detailed sensing mechanism with a cost-effective, non-invasive, and field-deployable strategy (smartphone) for monitoring vitamin B12 deficiency viaMMA detection.
Methylmalonic acid (MMA) is naturally produced in limited quantities in the human body. Elevated MMA levels in body fluids, such as serum and urine, are indicative of cobalamin (vitamin B12) deficiency.4 Vitamin B12 serves as a cofactor for methylmalonyl-CoA mutase, which catalyzes the conversion of L-methylmalonyl-CoA to succinyl-CoA in the mitochondrial Krebs cycle. A deficiency in cobalamin disrupts this process, causing the accumulation of methylmalonyl-CoA, which is subsequently converted to MMA and excreted in body fluids.5 Chronic vitamin B12 deficiency can lead to irreversible neurological disorders, adverse pregnancy outcomes, and pernicious anaemia.6 Therefore, early detection of methylmalonic acidemia and aciduria is essential for timely intervention. Studies have shown that healthy individuals have MMA concentrations ranging from 73 to 270 nM in serum and 3 to 11 µM in urine.7
Conventional methods for MMA detection encompass gas chromatography mass spectrometry (GC-MS),8,9 liquid chromatography mass spectrometry (LC-MS),10,11 high-performance liquid chromatography (HPLC)12 and electrochemical techniques.13,14 Yet, these approaches suffer from drawbacks such as expensive instrumentation, lengthy procedures, and the need for skilled operators. Consequently, there is a pressing demand for rapid, affordable, and real-time alternatives. Fluorescence detection techniques address these needs exceptionally well, delivering high selectivity, sensitivity, and on-the-spot monitoring, making them ideal for biomedical and clinical applications.
Recently, some studies have explored the fluorescence-based detection of MMA. For instance, Miyaji et al. developed an anthracene-based fluorescent colourimetric sensor that exhibited a green emission turn-on response to MMA in urine, although selectivity against other urine components was not demonstrated.15 Eu(III)-16 and Zn(II)7-based metal–organic frameworks (MOFs) have also been employed for MMA detection using a turn-off fluorescence mechanism. A Cd(II)-based coordination polymer with an amino ligand showed limited fluorescence enhancement and a red shift (∼10 nm) in response to MMA.17 Despite these advances, selective turn-on fluorescence sensing of MMA remains largely underexplored (Table 3). Additionally, in previous reports, the reason behind the turn-on fluorescence emission has not been thoroughly explained.
Inspired by prior reports15,17 highlighting the role of hydrogen bonding between a sensing probe and MMA, we designed and synthesised an organic probe, M1, containing an imidazole ring. The M1 probe molecule is capable of hydrogen bonding and electrostatic interactions with MMA, resulting in MMA-triggered aggregation. In this report, we explain the detailed mechanism of turn-on fluorescence via the ‘Analyte-Triggered Aggregation’ (ATA) mechanism18–20 using different spectroscopic techniques and computational studies. We have also given a thorough explanation for aggregate formation and the most plausible cause of the turn-on emission. M1 is a synthetically simple, efficient, and selective platform for the on-site, smartphone-based turn-on fluorescence detection method for MMA in human urine.
![]() | ||
| Scheme 1 Synthetic routes and molecular structures of M1 [(3,5-bis(4,5-diphenyl-1H-imidazol-2-yl)-4-hydroxyphenyl) (phenyl)methanone]. | ||
M1
:
1H NMR (400 MHz, Methanol-d4) δ 8.59 (s, 2H), 7.88–7.85 (m, 2H), 7.71 (s, 4H), 7.67–7.61 (m, 1H), 7.58–7.52 (m, 10H), 7.40–7.30 (m, 8H). 13C NMR (101 MHz, Chloroform-d) δ 194.87, 158.38, 144.16, 138.02, 133.01, 132.90, 132.60, 130.16, 129.24, 129.12, 129.04, 128.56.128.35, 128.08, 116.19. HRMS calculated for [M1 + H]: m/z 634.2484 found: [M1 + H]: m/z 634.2492 (Fig. S5 SI).
| Transition | Energy (eV) | Oscillator strength (f) |
|---|---|---|
| M1 | ||
| S 1 | 3.92 | 0.0001 |
| S 2 | 4.07 | 0.6192 |
| S 3 | 4.32 | 0.1713 |
| S 4 | 4.48 | 0.4440 |
| S 5 | 4.59 | 0.3729 |
| M1–MMA–M1 | ||
| S 1 | 3.88 | 0.0345 |
| S 2 | 3.92 | 0.0813 |
| S 3 | 4.01 | 0.1608 |
| S 4 | 4.07 | 0.1101 |
| S 5 | 4.20 | 0.0682 |
The emission of the probe was extremely weak. The photoluminescence (PL) measurements were performed in methanol using 310 nm (4.00 eV) excitation. The PL experiment revealed two emission bands: a weak high-energy band near 390 nm and a prominent, broad, structureless band centred around 465 nm (Fig. 1b). The featureless nature of the latter band suggests a CT transition.23 To validate this, a solvatochromism study was performed, which showed a red shift in emission with increasing solvent polarity, albeit a modest one (Fig. S9, SI). This is consistent with CT behaviour.
The UV-Vis analysis of MMA dissolved in the probe was performed in methanol (10−4 M). The spectrum showed the emergence of a new band at 415 nm (Fig. 2a) with an isosbestic point at 380 nm, indicating a ground-state interaction between M1 and MMA. The 214 nm and 310 nm absorption bands decreased, while the 415 nm band increased. Such a ratio-metric plot response is very important for real-life sample detection, as it reduces background interference.24 A change in absorption at 415 nm with increasing concentrations of aqueous MMA was also plotted. An absorption increment was observed with a nearly 0.99 regression coefficient. The DFT calculations were performed with the probe and the analyte (MMA), at the same level of theory as above. NMR corroborated the presence of hydrogen bonding between M1 and MMA (vide infraFig. 6). Based on that, we optimized the M1–MMA–M1 structure by pre-adding the H-bonding interactions between them (Fig. 2c). Surprisingly, after optimization, MMA brought the two M1 molecules face-to-face (Fig. 2c). This suggested that MMA might be inducing aggregation of the molecules. Notably, this significantly impacted the HOMO and LUMO of the molecule, as illustrated in Fig. 2d.
Furthermore, TDDFT calculations revealed that the two low-energy transitions were observed at 3.88 eV and 3.92 eV with oscillator strengths of 0.0345 and 0.0813, respectively (Table 1). Both these transitions are 3 orders of magnitude higher than the probe-only transition at 3.92 eV. Furthermore, the other transitions (S3 = 4.01, f = 0.1608, and S4 = 4.07, f = 0.1101) showed a lower oscillator strength as compared to the probe-only transition at 4.07, which had f = 0.6192 (Table 1). This corroborates the above ratio-metric observation from the UV-Vis results.
In the study of fluorescence spectra, initially, a weakly emissive blue-green solution exhibited bright blue fluorescence after the addition of aqueous MMA under UV light (365 nm) (Fig. 3a). The PL spectra showed a substantial increase in the emission intensity, approximately 73-fold (in comparison to the pristine), as calculated by the integrated area under the emission curve. The normalized spectra further confirmed a 10 nm blue shift in emission (Fig. 3b), and no new peak was observed, indicating that the interaction does not induce a new emissive state. Since M1 is insoluble in pure water, we made two solutions: one, a (9
:
1) water–methanol solution, and the other, a methanol-only solution, to examine the effect of water on M1. The PL spectra were then recorded (Fig. S11, SI). The decrease in emission intensity of the water–methanol solution demonstrated that water has no role in intensity enhancement.25 Also, the (9
:
1) water–methanol solution does not show intensity enhancement upon the addition of MMA, as confirmed by emission intensity measurements (Fig. S17, SI). The probable reason is MMA's high-water solubility. A high fraction of water makes MMA completely soluble and opposes the formation of the M1–MMA complexation. The comparison of reported probes for MMA sensing is displayed in Table 3. Thus, M1 showed a fast response time of 20 seconds and gives a turn-on emission (Table 3 and Fig. S16, SI).
| Urine samples | MMA added (µM) | MMA found (µM) ± SD | % Recovery |
|---|---|---|---|
| Sample 1 | 6.00 | 6.49 ± 0.18 | 108.16 |
| Sample 2 | 10.00 | 9.86 ± 0.38 | 98.60 |
| Sample 3 | 17.80 | 17.08 ± 0.44 | 95.95 |
| Sample 4 | 26.50 | 25.40 ± 0.14 | 95.84 |
| Sample 5 | 35.30 | 33.83 ± 0.67 | 95.83 |
| Sample 6 | 40.10 | 38.25 ± 0.53 | 95.38 |
| S. no. | Probe molecules [coordination polymer (cp)/MOF/organic molecules] | Sensing behaviour | Limit of detection (LOD) | Medium/solvent | Excitation/emission wavelength (nm) | Quantum yield (%) | Stokes shift (nm) | Response time (seconds) | Application | Ref. |
|---|---|---|---|---|---|---|---|---|---|---|
| 1. | [Cd(bbip)(NH2-BDC) (H2O)] | Red shift with turn-on fluorescence | 0.72 µM | EtOH | 370/422 | — | 52 | 300 | Urine | 17 |
| 2. | Ru/Tb-MOF | Ratiometric fluorescence | 3.8 µg mL−1 | — | 366/545 and 585 | — | 79 and 119 | 60 | Urine | 37 |
| 3. | Zn-MOF | Turn-off fluorescence | 1.7 nM | H2O | 290/350 | — | 60 | 30 | Urine | 7 |
| 4. | Eu-MOF | Turn-off fluorescence | 0.107 µM | — | 468/525 | 1.53 | 57 | 120 | Urine | 16 |
| 5. | 35 n | Turn-off fluorescence | 1.76 µM | H2O | 275/400 | — | 125 | — | Urine | 35 |
| {[Co(L)(bimb)]}n | 1.03 µM | 270/375 | — | 105 | — | Urine | ||||
| {[Co(L)(bimb)1/2]}n | 0.18 µM | 270/380 | — | 110 | — | Urine | ||||
| 6. | {[Co(L)(bibp)]bibp·2H2O}n | Turn-on fluorescence | 9.86 µM | — | 275/385 | — | 110 | — | Urine | 38 |
| 7. | Molecular sensor 2 | Turn-on fluorescence | 1 µM | 1% DMSO in ACN | 340/512 | — | 172 | — | Urine | 15 |
| 8. | M1 | Turn-on fluorescence | 5.78 µM | MeOH | 310/465 | 7 | 155 | 20 | Urine | This work |
To evaluate the detection sensitivity, a titration experiment was conducted by adding increasing concentrations of aqueous MMA to a 10−4 M methanol solution of M1. As shown in Fig. 3c, the emission intensity increased proportionally with the concentration of MMA. Using the standard method based on a signal-to-noise ratio (3σ/S), the LOD for MMA was calculated to be 5.78 × 10−6 M. The absolute quantum yield of M1 was enhanced from 0.07 to 0.51 after the interaction with MMA.
O and C
N stretches, respectively.26 For MMA, a low-energy vibration at 1720 cm−1 (C
O) was observed, along with a high-energy broad signal of OH stretching in the 3300–3400 cm−1 region. FTIR was also performed for the combined probe analyte complex (M1–MMA) (Fig. 5). C
O stretches showed a redshift from 1650 to 1639 (M1) and from 1720 to 1702 cm−1 (MMA). This clearly indicates a weakening of the C
O bond,27 likely due to hydrogen bonding. Furthermore, the N–H and O–H stretches of M1 and MMA disappeared, indicating the involvement of N–H (M1) and O–H (MMA).28 This proves the existence of H-bonding between M1 and MMA.
Next, to investigate the exact interaction between hydrogen and oxygen, a 1H NMR titration was performed in the CH3OD solvent. First, a 1H NMR spectrum of the probe (M1) was recorded in the presence of 2 equivalents of M1 to establish the baseline chemical shift under reference conditions. Subsequently, 1 equivalent of MMA was added to the same NMR tube while maintaining a constant volume, mixed thoroughly, and a second 1H NMR spectrum was acquired to observe the analyte-induced chemical shift. The 1H NMR spectra (Fig. 6b) showed both shielding and deshielding effects upon the addition of MMA. Notably, the Hd protons (–NH, see Fig. 6a) of M1 were deshielded after the addition of 1 equivalent of MMA, suggesting their direct involvement in binding with the analyte. Furthermore, the aromatic protons of M1 also shifted: Hb and Hc protons were deshielded, while the Ha proton was shielded. These changes are attributed to the altered electronic environment and the distinct ring currents due to the non-coplanar orientation of the phenyl rings.29 The HOH proton signal was not observed, likely due to the exchange with the trace amounts of moisture present in CD3OD, which was further confirmed by recording the 1H NMR spectra in the DMSO-d6 solvent (Fig. S6 SI).30
![]() | ||
| Fig. 6 (a) Schematic representation shows the interactions between the M1 compound and MMA; (b) 1H-NMR spectra of compound M1 (1 equiv.) and MMA (2 equiv.) in the CD3OD solvent. | ||
Upon addition of aqueous MMA, the analyte appears to participate in intermolecular hydrogen bonding with a nitrogen atom in M1. The stoichiometry of the M1–MMA interaction was further examined using Job's plot (Fig. S14 SI). For this, 10−4 M methanolic solutions of M1 and MMA were mixed in varying mole fractions while maintaining a constant total volume of 2 mL. The absorption spectra were recorded for each mixture (Fig. S14a SI), and a plot of absorbance versus the molar fraction of M1 showed a maximum at a 0.7 molar fraction (at 415 nm). This indicates a ∼2
:
1 stoichiometric ratio of M1 to MMA, confirming the formation of an M1–MMA complex. Time-resolved fluorescence spectroscopy was also performed for M1 and the M1–MMA mixture. The lifetime of M1 (0.14 ns) decreases (0.11 ns) after the interaction with MMA (Fig. S10, SI).
Thus, corroborating our hypothesis of the presence of H-bonding between M1 and MMA. This was used to carry out M1–MMA–M1 DFT calculations in the previous section and validates the computational results based on H-bonding. Next, we explore the role of this H-bonding in the formation of aggregates in the M1–MMA solution.
Both DLS and FESEM confirmed the formation of analyte-triggered aggregates. One additional experiment was also performed to support the MMA-triggered aggregation formation by diluting the M1–MMA solution from 10−4 M to 10−7 M with methanol (Fig. S15, SI). The emission intensity of the solution decreases with dilution, suggesting a decrease in the aggregation.
The zeta potential of M1 before and after the addition of MMA was measured with a narrow zeta potential distribution (Fig. S13 SI). The average zeta potential of M1 and M1–MMA was measured to be +14.4 mV and +6.9 mV, respectively (Fig. 8). Methyl malonic acid contains a –COOH group, which partially has a negative charge. The electrostatic interaction between M1 and MMA decreases the overall positive charge. A change in the positive zeta potential suggests the aggregation of M1 induced by MMA.31–33 All these experiments demonstrate that MMA is responsible for inducing aggregation mediated by hydrogen bonding with the probe M1.
The six urine samples, collected from the BITS Medical Centre, BITS Pilani, were centrifuged at 3000 rpm for 10 minutes to remove suspended particles. The resulting supernatant was spiked with known MMA concentrations. For each measurement, 30 µL of spiked urine was added to 2 mL of a 10−4 M M1 solution in methanol (Fig. 9c), and the fluorescence emission was recorded. MMA concentrations were then determined using the calibration curve. The recovery results, shown in Table 2, ranged from 95% to 108%, demonstrating the probe's effectiveness in detecting MMA in real urine samples and are comparable to literature reports.7,35
:
1 (M1: MMA) stoichiometry, as confirmed by Job's plot analysis. M1 exhibited pronounced fluorescence enhancement with a low detection limit of 5.78 µM, enabling trace-level MMA sensing. It also supports low-cost, on-site detection via TLC plate-based imaging on a smartphone. Notably, M1 showed excellent selectivity over common urinary analytes and accurately quantified MMA in spiked human urine (95–108%). This non-invasive, user-friendly method holds strong promise for rapid point-of-care screening for vitamin B12 deficiency-related metabolic disorders.
CCDC 2455842 contains the supplementary crystallographic data for this paper.39
| This journal is © The Royal Society of Chemistry 2026 |