Open Access Article
Shide Bakhtiari
*,
Vanessa Velasco
and
Ronald W. Davis
Stanford Genome Technology Center (SGTC), Stanford University, Palo Alto, CA 94304, USA. E-mail: shide68@stanford.edu
First published on 27th February 2026
Neutrophils have been linked to several inflammation diseases. To study the role of neutrophils in inflammation diseases and conditions, in vitro inflammation assays have been developed. Two drawbacks of these assays include the reliance on pre-processing techniques to isolate neutrophils and 2D migration analysis. These assays limit the physiological relevance of in vivo neutrophil migration which involves other blood components and the transmigration of 3D extracellular matrix-tissue environments. Extracellular matrices regulate neutrophil activation and deformation – important factors in the study of neutrophil migration behavior. To address these limitations, we have successfully created a microfluidic chip that recreates an inflammation event and directly isolates neutrophils from a small volume of whole blood using a 3D extracellular matrix. We optimized our platform by adjusting the extracellular matrix collagen, chemoattractant, and blood concentrations to maximize neutrophil yield. Six individual blood samples showed a range of 30–70 isolated neutrophils per mm2 from whole blood with 100% viability and purity using 2 mg mL−1 extracellular matrix collagen and 150 nM fMLP concentrations. Using this preliminary data, we performed a regression analysis to examine the effect of blood component quantities – white blood cells, red blood cells, neutrophils, and platelets – on the number of isolated neutrophils. The regression analysis revealed that the number of platelets possibly affects the number of transmigrated neutrophils conforming to a non-linear second-degree polynomial function, with an R2 of 0.88. Our findings highlight the potential of our platform to facilitate and improve the understanding of neutrophil migration and invasion in inflammation resolution, diseases, and treatments.
Current inflammation models including animal-based zebrafish and rats, continue to enrich our understanding of inflammation mechanisms, but the complex environment in an animal does not allow the determination of specific influences on neutrophil behavior, and the relevance of these models to human biology remains uncertain, as approximately 90% of animal studies fail to translate to human clinical outcomes.11 Therefore, advanced in vitro microfluidic systems and techniques have been developed to study neutrophil behavior, chemotaxis, and migration dynamics in inflammation. However, most systems rely on 2D surface migration, limiting the relevance of the 3D extracellular matrix and tissue environments that neutrophils must transverse during inflammation events. Although some studies investigated neutrophil migration behavior in hydrogel-based assays during an inflammation challenge,12,13 these microfluidic platforms, still, require the use of isolated neutrophils achieved through conventional density gradient centrifugation or magnetic-activated cell sorting.14 Centrifugation-based techniques are relatively simple but require large blood volumes, and subject cells to mechanical stress, along with osmotic or thermal shock.15 Since neutrophils are sensitive, this may have adverse effects on the immune phenotype16,17 and viability.18,19 Magnetic-based cell separation while less laborious has shown to alter migration of neutrophils.20 Thus, more recently, microfluidic models have eliminated the need for isolated neutrophils and have implemented the use of whole blood. One platform captured neutrophils directly from whole blood using adhesion molecules (e.g., P-selectin, E-selectin, fibronectin) or antibody-coated surfaces.21,22 Another system has shown that strategic microfluidic channel design and microfabricated posts restrict red bloods cells but allow neutrophils to migrate from whole blood towards a chemoattractant gradient (for example, fMLP).23 Although, these setups do replicate some aspects of in vivo-like neutrophil migration from blood to inflamed tissues, they lack the 3D extracellular matrix-tissue environment and are mostly useful for neutrophil adhesion, rolling, and crawling studies in the early steps of migration.24 3D extracellular matrix (ECM) forms a complex network of proteins that are accountable for cell locomotion support, immune cell interactions, and essential biochemical and mechanical signals that regulate neutrophil activation and deformation. By activating receptors like integrins, the ECM controls adhesion, signaling, and migration dynamics. In contrast, 2D environments are unable to recreate the dynamic and intricate interactions between cells and ECM proteins, leading to a knowledge gap in cell migration. Furthermore, none of the current systems have successfully reproduced a physiologically relevant 3D ECM structure interfaced with whole blood.
In this work, we developed a novel microfluidic platform that can isolate neutrophils from whole blood using a 3D ECM. The device consists of two chambers: one containing whole blood layered on top of an ECM and the bottom chamber containing a pathogen-like agent, simulating inflammation. Neutrophils migrate through the ECM between the two compartments under a chemoattractant gradient. By examining the ECM collagen, chemoattractant, and blood concentrations, we optimized the platform to isolate neutrophils in the bottom chamber without the contamination of other blood cell types or components. Post-transmigrated neutrophils were easily quantified and optically assessed for viability within the bottom chamber. Using our platform, we isolated neutrophils from six different individuals and quantified their migrated neutrophil populations. We observed differences in the number of transmigrated neutrophils between healthy samples (donor). Through regression analysis, we explored the influence of blood components – white blood cells (WBCs), red blood cells (RBCs), neutrophils, and platelets on the number of isolated neutrophils. Our preliminary data indicated that the number of platelets is likely to influence the number of transmigrated neutrophils, following a non-linear saturation model. These results show that our platform, as a more physiologically relevant inflammation model, can be used to enhance the understanding of neutrophil migration in immune responses, while simplifying neutrophil isolation and enabling the real-time monitoring of post-transmigration behavior. This tool has potential applications in examining neutrophil immune response and resolution mechanisms involved in inflammation diseases and treatments.
Before device assembly, all the acrylic components were rinsed with isopropyl alcohol (IPA) and air-dried. Glass coverslips were immersed and sonicated with autoclaved water containing 200 μL of Liquinox detergent for 30 minutes, and then washed successively with DI water, acetone, methanol, and IPA. Glass coverslips were dried with compressed air and visually inspected for cleanliness. To improve DSA adhesion and create a suitable cell environment, the dry coverslips were plasma treated under 0.1 Torr at medium power for 1 minute. Additionally, to enhance surface hydrophilicity and ECM adhesion to the 3 mm acrylic top layer, UV ozone treatment was applied for 20 minutes on one side and 10 minutes on the other side before assembly.
The device was assembled by placing the cleaned coverslip on a lint-free paper surface. All layers were carefully aligned at each step to ensure channel port functionality. The first layer of DSA was adhered to the coverslip. The 1 mm acrylic layer was then attached, followed by the second layer of DSA. The polycarbonate membrane filter was gently placed at the center of each bottom well by pressing the edge of the filters onto the exposed adhesive. Next, the third layer of DSA was attached. At the top, the 3 mm acrylic layer was added to form the top chamber. Finally, the assembled device was inspected to ensure proper alignment, adhesion, and component integrity.
Isolated neutrophils were required for device characterization experiments. For this, an EasySep Human Direct Neutrophil Isolation kit (Stemcell) was used following the manufacturer's protocol. Briefly, the blood sample was gently mixed and 1 mL was taken for isolation. 50 μL of the isolation cocktail was added and mixed well, followed by 50 μL of RapidSpheres (vortexed for 30 seconds prior to use). The mixture was gently mixed and incubated at room temperature (RT) for 5 minutes. Next, 3 mL of warm DPBS solution with 1 mM EDTA solution was added and gently mixed. For the second isolation step, the tube was placed inside the EasySep magnet for 10 minutes. The enriched cell suspensions were then pipetted into a new tube. 50 μL of RapidSpheres was added into the tube with the enriched cells. The sample was incubated and mixed at RT for 5 minutes, then again 5 minutes on the EasySep magnet. For the third isolation, the clear fraction was collected into a new tube and placed in the magnet for a final 5 minutes. The enriched cell suspension was carefully transferred into a tube and centrifuged for 10 minutes at 1600 rpm. Afterwards, the supernatant was aspirated, and the cell pellet was resuspended in media. Finally, the cells were counted and adjusted to 2.2 × 106 cells per mL concentration.
Our studies showed that with higher concentrations of collagen, the pore size of the matrix was likely reduced, thus hindering the movement of neutrophils into the matrix. This experiment was critical in optimizing the structure of collagen and finding the appropriate pore size that was suitable for further studies on neutrophil migration and inflammation. If the matrix pore size was too large, the neutrophils can easily pass to the bottom chamber without inflammation induction. In contrast, higher concentrations of collagen generated denser matrixes with smaller pores sizes that limit neutrophil passage, unless they undergo morphology changes (i.e., spreading) caused by chemoattractant interactions. These reduced pore sizes also ensured that other blood cells or components do not trespass into the bottom chamber.
Our data (Fig. 4) indicated that with the increase of fMLP concentration, the number of isolated neutrophils in the bottom chamber was also increased. For 50 nM of fMLP, an average of ∼700 neutrophils per mm2 was observed, while at 100 nM, ∼1000 neutrophils per mm2 were quantified. Finally, ∼1500 neutrophils per mm2 were recorded in the case of 150 nM. In all fMLP conditions, no dead cells were observed within the two hour experimental period. The rise in the number of isolated neutrophils ascertains that 100–150 nM fMLP concentrations provide an adequate chemotactic stimulus without affecting the viability of the cells.
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2) on the number of migrated neutrophils in the bottom chamber (Fig. 5). These experiments examined if decreased sample viscosity or addition of anti-coagulant agents (EDTA) improved the migration of neutrophils.
The results (Fig. 5) indicated that whole blood yielded the highest median number of isolated neutrophils at 125 neutrophils per mm2 but displayed the widest interquartile range (IQR) compared with diluted blood samples. For 1
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1 diluted blood, the median number of isolated neutrophils was three times lower than in whole blood at 44 neutrophils per mm2, yet its IQR was narrower, showing reduced variability in data set. In the case of 1
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2 dilution, 50 neutrophils per mm2 was the median count of neutrophils with the least variability among all conditions. These findings indicate that the dilution of blood decreases the number of neutrophils isolated at the bottom chamber. While decreasing the red blood cell density might decrease physical obstructions, diluting also removes important plasma factors, platelets, and soluble signals that promote neutrophil activation and chemotaxis. Our data indicated that the entire blood environment was required for optimal neutrophil transmigration in our platform. This is consistent with previous reports that neutrophil motility is not only affected by mechanical interactions, but also biochemical effects of plasma factors and cell-to-cell interplay.10
The mean number of neutrophils isolated per mm2 in the bottom chamber for each healthy sample (donor) varied, ranging from the highest count of 71 neutrophils per mm2 for healthy sample (donor) 5 to a low of 31 neutrophils per mm2 for healthy sample (donor) 3. It has been shown that various blood components work together to assure an effective immune response. RBCs indirectly regulate neutrophil migration by influencing chemotactic gradients.26 Platelets are significant mediators of the inflammatory response by actively promoting neutrophil migration towards sites of infection.27 Other white blood cells assist neutrophil migration during inflammation by sending signals that will attract, guide, or limit their movement. Thus, differences in blood composition between healthy samples (donor), may reflect in neutrophil behavior, hence possibly explaining the inter-healthy sample (donor) variations in respective isolation outcomes.
For the six data points, the Pearson and Spearman correlation coefficients (ρ) only indicated a strong relationship between isolated neutrophils and the RBC count. For this relationship, the Pearson coefficient was ρ = 0.73 with a p-value of 0.09, while the Spearman coefficient was ρ = 0.71 with a p-value of 0.11 Although the correlations appear strong, the high p-values (>0.05) indicate the relationship may be due to random chance. For WBC, platelets, and blood neutrophils, correlation coefficients were <0.5 with p-values > 0.1. Therefore, we cannot claim, from this data, that there is a statistically significant linear relationship (in the case of the Pearson correlation) or monotonic relationship (in the case of Spearman correlation) between isolated neutrophils and blood cell counts.
Linear regression analysis showed the relationship between the isolated neutrophils in the bottom chamber and RBC count had the highest R2 value, of 0.54. For the other blood components, such as WBC, platelets, and total neutrophils, R2 values were below 0.5. These low R2 values reveal that linear regression does not fully model the complexity of the number of migrated neutrophils with respect to blood component counts. Thus, there are possible influences from the combination of the variables or non-linear dynamics at play.
For this, non-linear exponential growth/decay, logistic function and polynomial models were applied. The exponential model generated a poor fit, as evidenced by a R2 value of 0. The logistic regression model produced R2 values from 0.60 to 0.65, with the highest value observed for the relationship between isolated neutrophils and platelets. This relationship had a negative growth rate indicating that as the platelets increase, the isolated neutrophils variable decrease, but the relationship was subtle because the magnitude of slope is small.
Polynomial regression showed insignificant R2 values for isolated neutrophils and RBC, WBC, and blood neutrophils at 0.54, 0.55, and 0.42, respectively. The highest fit (R2 = 0.88) was observed for the relationship between isolated neutrophils in the bottom chamber and platelets. The polynomial coefficients (see Fig. S4) for this relationship suggests that isolated neutrophils initially increase with platelets but eventually reach a peak and start to decrease.
Based on our analysis, among all blood components, RBCs may have a linear relationship with isolated neutrophils. This is supported by moderate Spearman and Pearson coefficients with high p-values. RBCs counts also had the highest R2 in the linear regression model. However, high p-values and insufficient R2 values do not confirm this relationship. Further investigation with a larger data set is needed for a comprehensive understanding of the relationship between RBCs and transmigrated neutrophils. Although the sample size is limited, polynomial regression analysis did show platelets have a strong non-linear effect on neutrophil isolation where neutrophils and platelets follow a saturation model. Beyond a certain threshold, increases in platelets do not have proportional returns in neutrophil isolation. These results provide an initial framework for further investigations about the blood components that may affect neutrophil isolation and the biological mechanisms involved.
Unlike other inflammation models that rely on 2D surfaces, require pre-processed isolated neutrophils, or microfabricated RBC filters, our model implements a tunable 3D collagen–Geltrex ECM. By considering the effect of collagen concentration, we modified our matrix structure. We observed that high collagen concentrations (2 mg mL−1) hindered neutrophils as well as other blood cells from freely trespassing the ECM. According to previous studies, concentrations of collagen type I at 2 mg mL−1, generate pore sizes between 1–3 μM.28 These pore sizes are far below blood cell diameters which range between 6–20 μM, and neutrophil diameters which fall between 13–18 μM. Thus, it is only after the addition of fMLP that a gradient is established across the ECM causing neutrophils in whole blood to interact with chemoattractant molecules and undergo cytoskeleton and morphology changes. Neutrophils flatten, polarize and squeeze through the matrix pores towards the gradient source in the bottom chamber.29,30
In the bottom well, purified neutrophils were microscopically visualized and confirmed by their unique multi-lobed nuclei. We never observed other cell types in the bottom chamber during the two-hour assay period and fMLP concentrations tested. fMLP is a familiar chemoattractant that primarily recruits neutrophils due to their higher levels of formyl peptide receptors (FPR)31 specifically, FPR1, compared to other cell types. Though other studies have shown that fMLP chemoattracts monocytes, basophils, and eosinophils, these cells are far less responsive to fMLP compared to neutrophils and often require higher concentrations or a 6 h delay to respond.32
Similar to other studies, in our inflammation model, we did observe changes in migrated population for different fMLP concentrations tested. We found that increasing concentrations of fMLP between 50–150 nM expanded the migrated neutrophil population in the bottom well, but concentrations of 1 μM depleted neutrophil migrated population by 60%. Previously, it was reported that fMLP concentrations of 50–150 nM showed steeper gradients for higher concentrations, consequently leading to faster diffusion rates and maximizing the recruitment of neutrophils. In this concentration range, neutrophils showed optimal chemotactic response with strong and directed movement toward the chemoattractant source.33 In contrast, higher concentrations of 1 μM fMLP result in receptor desensitization and, as a consequence, decrease in chemotactic polarization efficiency, causing random cell movement.34 This suggests that our platform generates chemical gradients across the ECM like those generated in more traditional microfluidic systems that involve tedious pumping systems, or sophisticated microfluidic channel design and fabrication.
While other inflammation models require dilutants for the analysis of whole blood samples, our model isolates neutrophils from unprocessed (undiluted) whole blood as well as diluted blood samples. In our model, we observed that whole blood presented the highest number of isolated neutrophils compared to 1
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1 or 1
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2 diluted blood samples. Because our sample is not confined to a small channel cavity, activated and deformable neutrophils can move with more ease around RBCs and other blood cells towards the gradient source. While diluting a sample can increase the distance between cells and facilitate cell movement, in our device, it decreased the number of available neutrophils to migrate.
Working with whole blood samples, however, we did see large differences in neutrophil isolation between healthy samples (donor). Because blood components actively participate in neutrophil transmigration and are not the same in each healthy sample (donor), they may contribute to the variation observed. RBCs may restructure the ECM pore sizes because of their mass, acting as a physical barrier for migration. The presence of RBCs may also influence chemotactic gradients via chemokine binding or setting oxygen levels by releasing oxygen into the surrounding tissue which affect neutrophil metabolism, activation, and impacting movement indirectly.26,27 Similarly, platelets increase neutrophil surface adhesion via the interaction between P-selectin and PSGL-1 and release chemotactic factors to guide the migration.35,36 In addition, other white blood cells, such as monocytes, release cytokines that modulate neutrophil activation and recruitment. The interplay between all these components will affect neutrophil behavior. Thus, regression analysis was used to investigate if the variability in migrated neutrophils among healthy samples (donor) were influenced by blood composition-number of neutrophils, RBCs, WBCs, and platelets. Based on our regression analysis, we found the higher blood neutrophil counts do not result in higher isolated neutrophils. It is possible that other factors such as the activation states of neutrophils drive their transmigration behavior. Also, we found that there is no linear pattern between isolated neutrophils in the bottom chamber and blood components. Instead, we did observe that in comparing all the blood components, platelets satisfied a second-degree polynomial regression model with R2 = 0.88. This indicates that at lower platelets levels, isolated neutrophils increase, but at higher platelets levels, neutrophil isolation can decrease, suggesting a saturation or plateau effect. This model points to nonlinear dynamics between isolated neutrophils and platelets. Platelets generally support neutrophil migration via adhesion support and inflammatory signaling; however, under extreme activation or aggregation many bioactive molecules, such as thrombospondin-1 and transforming growth factor-beta (TGF-β) are released, which may inhibit the motility of neutrophils. Also, at high numbers of platelets, platelet aggregates increase. It is possible that neutrophils tend to get stuck and attached to platelet aggregates rather than migrating effectively through the ECM. Our initial results corroborate this understanding of platelet behavior.
Though, we only presented the quantification and viability of transmigrated neutrophils during fMLP inflammation challenges, our microfluidic platform can have broader applications including the examination of inflammation resolution mechanisms as well as neutrophil immune response to different stimuli and therapeutics. In the inflammation process, after neutrophils transmigrate the ECM and tissue, they address threats using various defense mechanisms. Then, they undergo apoptosis as an initial step in resolving inflammation.37 Using our platform, post-transmigration neutrophil phenotypes can be examined using fluorescent labels and microscopy to determine how resolution evolves between diseased and non-diseased populations. Additionally, our platform can explore neutrophil immune response to different pathogen sources by replacing fMLP with other chemoattractant or pathogen agents in the transmigration wells. Our platform can also be used to examine different drugs that modify neutrophil transmigration and post-transmigration behavior. Due to the multi-well design, which can be expanded to a larger array if required, we can run multiple condition experiments on the same device. As a result, our well based chip design can simplify the experimentation involved in inflammation studies while still enhancing the physiological relevance due to the incorporation of the ECM and utilization of whole blood. It eliminates the need for traditional, laborious and potentially harmful neutrophil isolation methods. Thereby, our inflammation platform can provide a useful tool for the investigation of different inflammation pathologies and treatments.
Resource for this information can be found here: https://grants.nih.gov/grants/policy/hs/private-information-biospecimens-flowchart.pdf.
Supplementary information (SI) is available. See DOI: https://doi.org/10.1039/d5lc00554j.
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