Open Access Article
Mariusz Michalczyk
*a,
Wiktor Zierkiewicz
a and
Pavel Hobza
b
aFaculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland. E-mail: mariusz.michalczyk@pwr.edu.pl
bInstitute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo Namesti 542/2, 16000 Prague, Czech Republic
First published on 18th February 2026
Chalconium cations are powerful Lewis acids containing a hypervalent chalcogen atom. They are utilized in the field of organocatalysis and crystal engineering. In the current work, the electrophilic force of these species has been examined. The [SF3]+ chalconium cation was selected for the current study, and its complexes with noble gas atoms were modeled. In this manner, a set of three [SF3(NCCH3)2Ng]+ and [SF3(Ng)2][SbF6] complexes (Ng = Ar, Kr, Xe) were computed. The Ng atom was substituted in place of the anion (in [SF3(NCCH3)2Ng]+) or neutral ligands (in [SF3(Ng)2][SbF6]). The computations were performed using a polarizable continuum model. The obtained tetramers were stable, true minima, characterized by weak interaction energies between −2 and −1 kcal mol−1. When the [SbF4]− anion was substituted by a noble gas atom, the interaction energy was significantly weakened compared to the full [SF3(NCCH3)2][SbF6] system, and its nature changed from electrostatic to dispersive. A comparable scenario was observed when the NCCH3 ligands were replaced with two noble gas atoms.
The reactivity of chalconium cations has been reported recently in a couple of works. For example, chalconium units were studied in complexes with the [β-Mo8O26]4− compound.11 A series of [Ch(bPh)R]+ cations (Ch = S, Se, Te; R = phenyl, 2,4,6-(CH3)3C6H2, 4-BrC6H4, 4-FC6H4) established stable structures with beta-octamolybdate ligands according to specific patterns. The primary stabilizing interaction occurred between the σ-holes on the chalcogen atoms and the oxygen atoms, supplemented by secondary electrostatic cation–anion interactions. The alteration of the S atom to Se and Te induced a change in the O⋯O⋯Ch angle, from 40–50° for the sulfonium cation to 90° for the telluronium analogue.11 In another work, the reactivity of silylated chalconium ions versus the borate and carborate anions was investigated both experimentally and theoretically.5 The [T3S]+ and [T3O]+ cations (T = Me3Si) were obtained and characterized throughout this study.5 It should be noted that the arrangement of oxygen as a center of the chalconium cation shown therein is rather scarce. The effectiveness of cyclic sulfonium, selenonium and telluronium cations as catalytic agents in two model reactions, hydrolysis of methyl chloride and addition of ammonia to acetone, was examined by Novikov and Bolotin.2 The transition states stabilized via chalcogen bonds were quantitatively described by DFT-based theoretical predictions. The interaction energies and charge transfer values of the transition states increased from S to Te cations, indicating greater stability for the heavier chalcogens.2
Contrary to previous studies, in the current manuscript, simpler models were chosen to evaluate the principles of the interaction between the sulfonium cation and neutral ligands. We aimed to test the very limits of the ligand-accepting abilities of the sulfonium cation by using the noble gas (Ng) atoms as models of Lewis bases. Noble gases are famous for their limited reactivity, owing to their full valence electronic configuration. The history of studying noncovalent interactions involving Ng atoms is relatively short. The so-called “aerogen bond”, where the noble gas atoms produce σ- or π-holes, has been reported several times starting in 2015.22–29 Recently, Pino-Rios30 et al. performed calculations of systems where the B–Ng (Ng = Ar, Kr, Xe, Rn) covalent bond was formed in [BH4–Ng]+ synthons. The noble gas⋯halonium cation interactions were also documented.31 We demonstrated that these interactions can be accompanied by slight shifts in the σ-hole location. The set of modeled [X–Xe⋯Ng]+ (X = Cl, Br, I; Ng = Ar, Kr, Xe) complexes was characterized by a wide span of interaction energies from −1 to −25 kcal mol−1. In the current investigation, again three noble gases, namely Ar, Kr and Xe, were utilized as model nucleophiles. To provide experimental context to our work, as a computational prototype of the sulfonium cation, the [SF3(NCCH3)2][SbF6] compound32 found in the Cambridge Structural Database33 was chosen. The presence of both neutral and anionic ligands attached to the [SF3]+ cation enabled us to assess the interactions between the cation and noble gases in different geometrical scenarios, in which the Ng atoms could be placed in the position of the nitrogen atoms of the neutral ligands or the fluorine atom of the anion. The strength, nature, and properties of chalcogen bonds were explored using a variety of theoretical approaches. We believe that our fundamental study will deliver essential data about the interactions powered by sulfonium cations with highly nonreactive neutral ligands. In our opinion, assessing such borderline cases of chalconium cation interactions is vital to prompting further studies of these fascinating species.
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| Fig. 1 The [SF3(NCCH3)2][SbF6] fragment of the X-ray structure (refcode AMOLUM32). | ||
A comparison between the selected experimental and theoretical geometric parameters (after optimization in the solvent) is given in Table 1. As one can see from this table, the DFT-predicted geometry is more linear on incorporating ligands on the respective extensions of the F–S bond in the cationic entity; however, all distances except S-F4 are overestimated. It must be added that the RMSD (root mean square deviation) between experiment and theory for a larger set of distances and bond angles is only 0.049 Å and 1.6°, respectively. Thus, the mimicking of the forces met in the crystal structures by DCM was satisfactory. The same results for optimization in the gas phase yielded 0.662 Å and 20.8°, accordingly. Additionally, the superimposition of the structures: crystalline, optimized in the gas phase, and in the implicit solvent medium, is illustrated in Fig. 2. The model of solvent inclusion with DCM was confirmed as far more precise than the default optimization in the gas phase and consequently picked for further modelling within the current work.
| Exp.a | Theory (DCM as solvent) | Δb | |
|---|---|---|---|
| a Taken from ref. 32.b Differences between theoretical and experimental parameters. | |||
| Bond distance | |||
| S–F4 | 2.621 | 2.473 | −0.148 |
| S–F1 | 1.509 | 1.522 | 0.013 |
| S–F2 | 1.512 | 1.526 | 0.014 |
| S–F3 | 1.512 | 1.526 | 0.014 |
| S–N1 | 2.462 | 2.525 | 0.063 |
| S–N2 | 2.462 | 2.520 | 0.058 |
| Bond angles | |||
| F1–S–F4 | 172.2 | 176.0 | 3.8 |
| F2–S–N2 | 175.3 | 176.4 | 1.1 |
| F3–S–N1 | 175.3 | 176.0 | 0.7 |
For the purpose of later comparison between the optimized crystal structure and models with noble gases, the theoretical characteristics of the studied compound were determined. The investigated complex exhibits interactions between charged and neutral particles; hence, the flow of electron density was important to evaluate. It was measured in terms of the atomic charges, counted by 5 different theoretical protocols. Recently, the ADCH and CM557 ones were confirmed as excellent for estimating atomic charges, as they reflected the experimental values from electron diffraction. The atomic charges on atoms involved in noncovalent interactions within the studied compound are listed in Table 2. Summing of the atomic charges on the atoms of the cation (first four rows) exhibited that the charge of [SF3]+ is from 0.594 (CM5) to 0.884e (NBO). Thus, charge transfer occurs from the ligands to the cation. Nonetheless, the sulfur atom retained its high positive atomic charge of value between 0.718e and 2.917e. The negative charge on the atoms of the Lewis bases was from −0.305e to −1.364e for fluorine in the anionic entity and −0.303e to −1.364e for nitrogen atoms in the acetonitrile ligands. One can notice that the NBO and AIM charges deviate significantly from the others, as illustrated in Fig. 3. The value of NBO is in line with the other methods only for the N1 and N2 atoms, while the AIM approach to charges gives the most extreme results both for positive and negative charges. The method based on electrostatic potential (CHELPG) is closer to the referential CM5 and ADCH ones; however, a certain degree of overvaluation of both positive and negative charges is visible.
| CM5 | ADCH | AIM | CHELPG | NBO | |
|---|---|---|---|---|---|
| S | 0.718 | 0.658 | 2.917 | 0.908 | 2.155 |
| F1 | −0.040 | −0.017 | −0.702 | −0.059 | −0.422 |
| F2 | −0.042 | −0.009 | −0.698 | −0.060 | −0.424 |
| F3 | −0.042 | −0.009 | −0.698 | −0.063 | −0.425 |
| F4 | −0.305 | −0.314 | −0.768 | −0.481 | −0.738 |
| N1 | −0.345 | −0.306 | −1.364 | −0.517 | −0.475 |
| N2 | −0.344 | −0.303 | −1.364 | −0.508 | −0.475 |
The nature of the interactions in the selected fragment of the crystal structure was predicted by the ALMO-EDA scheme. The results are collected in Table 3. According to this protocol, the interaction energy is dissected into electrostatic (ELEC), Pauli repulsion (PAULI), dispersion (DISP), polarization (POL) and charge transfer (CT) components. Additionally, in the penultimate and last columns of Table 3, the interaction energies are summarized. The M062X/def2tzvpp interaction energies were taken from ALMO-EDA computations in the solvent and corrected for BSSE. All energies concern interactions between the given ligand and the remainder of the studied [SF3(NCCH3)2][SbF6] system; thus, in each case, two separate units were considered. The M062X interaction energy between the anion and the cation with two neutral ligands attached is −16.66 kcal mol−1, while for the neutral pairs ([SF3(NCCH3)2][SbF6] versus NCCH3) it was worse by around 6 kcal mol−1.
| ELEC | % | PAULI | DISP | % | POL | % | CT | % | Eint (M062X) | |
|---|---|---|---|---|---|---|---|---|---|---|
| [SbF6]−⋯[SF3(NCCH3)2]+ | −20.99 | 67 | 14.57 | −4.72 | 15 | −2.09 | 7 | −3.43 | 11 | −16.66 |
| NCCH3⋯[SF3(NCCH3)][SbF6] | −20.54 | 57 | 24.92 | −5.26 | 15 | −3.38 | 9 | −6.68 | 19 | −10.94 |
| NCCH3⋯[SF3(NCCH3)][SbF6] | −20.70 | 57 | 25.25 | −5.29 | 15 | −3.41 | 9 | −6.81 | 19 | −10.97 |
The contribution of individual components of Eint in the ALMO-EDA can be explained by pairing them with the CM5 atomic charges. When examining the charges on the atoms directly participating in the cation⋯anion interaction, namely the sulfur atom from the cation and the F4 atom belonging to the anion, these values are +0.72 and −0.31e, respectively (see Table 2). Indeed, the ELEC factor is dominant in this system, accounting for 67% of the total attractive forces, whereas DISP and CT together contribute 26%. The presence of two neutral ligands significantly influences the Eint. The charges on the nitrogen atoms of the neutral ligands are even slightly more negative than on F4 and amount to −0.34e. These interactions are primarily electrostatic, accounting for 57% of the total attractive components. Compared to the cation⋯anion interaction, the contribution of the CT term is higher, reaching 19%. The least important term is POL, which was less than 10%.
The QTAIM analysis for the structure highlighted in Fig. 1 confirmed the presence of three bond paths with associated bond critical points (BCPs) between the cation and the ligands (Fig. S1). The electron density (ρ) at BCP can be an indicator of the strength of the examined interactions.54,58–60 In the current case, these values are 0.028 au and 0.035 au, for the S⋯F and two S⋯N interactions, respectively. These values are typical for the noncovalent interactions of intermediate strength. Nonetheless, the ρ values do not reproduce the outcomes of the interaction energies, which signify a distinctly stronger interaction between the ions.
The optimized [SF3(NCCH3)2Ng]+ and [SF3(Ng)2][SbF6] complexes are assessed by means of their geometry in Table 4. The general scheme of the discussed tetramers is presented in Fig. 5. In the complexes labelled as 1–3, the Ng atom was initially put on the coordinates corresponding to the fluorine atom from the [SbF6]− anion in the crystal structure, while in complexes 4–6, two equivalent Ng atoms were placed in the original place of atoms from acetonitriles in the crystal. All six complexes are true minima on the potential energy surface. They exhibit S⋯Ng distances shorter than the sums of the van der Waals radii of the respective atoms. The length of the S⋯Ng bond increases with the size of the Ng atom. In general, the incorporation of the Ng atom takes place at a longer distance than the attachment of F or N atoms in the optimized crystal source (compared with Table 1). This lengthening is from 0.9 (complex 5) to 1.1 Å (complex 3). This change is accompanied by the simultaneous shortening of the remaining contacts participating in the stabilization of the complexes. The S⋯N distances are shorter by about 0.01 Å, whereas the S⋯F ones are by 0.2 Å in comparison with the optimized full [SF3(NCCH3)2][SbF6] system. Another common trend is that all itemized angles concerning noncovalent interactions in these compounds indicate high proximity to a linear angle. The largest deviation is observed for the F1–S–Ng angle in 2, which is 164.7°. Therefore, the position of the MEP maxima (which can be termed as σ-holes) at the sulfonium cation is vital for the trajectory of incorporation of the Ng atom. It is important to notice that even when such cations are partially neutralized by an anion or two acetonitrile ligands and immersed in a solvent, they can still bind two neutral, relatively unreactive noble gas atoms.
| R(S⋯Ng) | R(S⋯N1) | R(S⋯N2) | ∠F1–S–Ng | ∠F2–S–N2 | ∠F3–S–N1 | |
|---|---|---|---|---|---|---|
| 1 | 3.553 | 2.435 | 2.435 | 167.0 | 176.9 | 176.9 |
| 2 | 3.569 | 2.433 | 2.433 | 164.7 | 177.1 | 177.1 |
| 3 | 3.607 | 2.437 | 2.437 | 168.2 | 177.1 | 177.1 |
| R(S⋯Ng1) | R(S⋯Ng2) | R(S⋯F4) | ∠F1–S–F4 | ∠F2–S–Ng2 | ∠F3–S–Ng1 | |
|---|---|---|---|---|---|---|
| 4 | 3.553 | 3.632 | 2.269 | 178.5 | 170.5 | 178.4 |
| 5 | 3.457 | 3.467 | 2.269 | 178.8 | 175.4 | 179.1 |
| 6 | 3.604 | 3.590 | 2.276 | 179.2 | 163.3 | 167.3 |
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| Fig. 5 Molecular diagrams presenting the general scheme of the [SF3(NCCH3)2Ng]+ and [SF3(Ng)2][SbF6] studied complexes. | ||
The atomic charges on selected atoms in complexes 1–6 are shown in Table 5. First, it should be noted that all Ng atoms have positive charges. Their values increase in the order Ar < Kr < Xe, from 0.002e to 0.055e. This confirms the charge transfer from the Ng atom to the cation. With respect to the sulfur atom, its charge is lessened in relation to the results for the optimized full crystal (see Table 2), except in a few cases. Its growth is observed for complexes 1, 2, 4, 5 and 6 according to the CM5 method and complexes 1–3 by the ADCH and AIM method. Within the set of systems 1–3, the switching of the [SbF6]− anion to a noble gas induces a slight reduction in the charge on the whole cation by a maximum of 0.05e (in the CHELPG method). An exception is seen in the CM5 results, which show a marginal rise in this value. Concerning the complexes containing two Ng atoms (4–6), the general trend indicates a rise in cation charge across all methods, from 0.02 to 0.18e, with the largest increase observed for CHELPG. The intensity of this enlargement can be presented in the order Xe < Kr < Ar. As it was in the case of the charges for the optimized crystal structure, the NBO and AIM approaches show significantly different values of charge, again with the most extreme deviations found for the AIM charges. However, the trends mentioned above are still preserved.
| Atom | CM5 | ADCH | AIM | CHLPG | NBO | Atom | CM5 | ADCH | AIM | CHLPG | NBO |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4 | ||||||||||
| S | 0.725 | 0.644 | 2.889 | 0.873 | 2.122 | S | 0.783 | 0.722 | 2.966 | 0.810 | 2.122 |
| F1 | −0.023 | −0.004 | −0.695 | −0.018 | −0.406 | F1 | −0.017 | 0.016 | −0.682 | −0.027 | −0.407 |
| F2 | −0.044 | −0.010 | −0.695 | −0.067 | −0.426 | F2 | 0.004 | 0.022 | −0.684 | 0.017 | −0.384 |
| F3 | −0.044 | −0.010 | −0.699 | −0.065 | −0.426 | F3 | 0.005 | 0.029 | −0.682 | 0.023 | −0.384 |
| Ar | 0.020 | 0.021 | 0.005 | 0.008 | 0.003 | F4 | −0.286 | −0.301 | −0.759 | −0.424 | −0.740 |
| N1 | −0.336 | −0.273 | −1.367 | −0.506 | −0.489 | Ar1 | 0.024 | 0.024 | 0.008 | 0.022 | 0.003 |
| N2 | −0.336 | −0.272 | −1.367 | −0.513 | −0.489 | Ar2 | 0.020 | 0.021 | 0.006 | 0.019 | 0.002 |
| 2 | 5 | ||||||||||
| S | 0.718 | 0.625 | 2.883 | 0.855 | 2.120 | S | 0.753 | 0.647 | 2.949 | 0.672 | 2.116 |
| F1 | −0.024 | 0.003 | −0.696 | −0.013 | −0.407 | F1 | −0.021 | 0.010 | −0.688 | −0.010 | −0.409 |
| F2 | −0.045 | −0.010 | −0.699 | −0.065 | −0.427 | F2 | 0.001 | 0.039 | −0.685 | 0.042 | −0.387 |
| F3 | −0.045 | −0.010 | −0.699 | −0.064 | −0.427 | F3 | 0.001 | 0.041 | −0.684 | 0.045 | −0.386 |
| Kr | 0.030 | 0.032 | 0.118 | 0.016 | 0.006 | F4 | −0.287 | −0.305 | −0.760 | −0.397 | −0.739 |
| N1 | −0.336 | −0.270 | −1.367 | −0.505 | −0.488 | Kr1 | 0.043 | 0.050 | 0.020 | 0.049 | 0.008 |
| N2 | −0.336 | −0.271 | −1.367 | −0.509 | −0.488 | Kr2 | 0.042 | 0.049 | 0.019 | 0.048 | 0.008 |
| 3 | 6 | ||||||||||
| S | 0.710 | 0.606 | 2.875 | 0.777 | 2.116 | S | 0.744 | 0.619 | 2.931 | 0.691 | 2.111 |
| F1 | −0.025 | 0.009 | −0.697 | 0.005 | −0.408 | F1 | −0.019 | 0.019 | −0.686 | −0.024 | −0.409 |
| F2 | −0.046 | −0.011 | −0.699 | −0.059 | −0.429 | F2 | −0.001 | 0.039 | −0.686 | 0.039 | −0.390 |
| F3 | −0.046 | −0.011 | −0.699 | −0.057 | −0.428 | F3 | −0.001 | 0.041 | −0.686 | 0.040 | −0.389 |
| Xe | 0.043 | 0.051 | 0.025 | 0.055 | 0.013 | F4 | −0.288 | −0.307 | −0.761 | −0.441 | −0.737 |
| N1 | −0.336 | −0.271 | −1.368 | −0.487 | −0.487 | Xe1 | 0.048 | 0.059 | 0.030 | 0.065 | 0.013 |
| N2 | −0.336 | −0.272 | −1.368 | −0.492 | −0.487 | Xe2 | 0.049 | 0.060 | 0.030 | 0.064 | 0.013 |
Table 6, similar to Table 3, consolidates the interaction energy terms according to the ALMO-EDA scheme in the solvent medium. For the first three systems in which the [SbF6]− anion was replaced by a Ng atom, the interaction energies and their nature noticeably differ from those observed in the case of the [SF3(NCCH3)2][SbF6] complex (Table 3), which is quite expected as the anionic entity was replaced by a neutral one. The Eint values calculated at the M06-2X level range from −0.48 kcal mol−1 for Ar⋯[SF3(NCCH3)2]+ to −1.08 kcal mol−1 for Xe⋯[SF3(NCCH3)2]+. A similar trend is observed when two neutral NCCH3 ligands are replaced by Ng atoms. In these systems (4–6), the interaction energies are comparably small, ranging from −0.23 to −1.13 kcal mol−1 for Ar⋯[SF3Ar][SbF6] and Xe⋯[SF3Ar][SbF6], respectively. These values are smaller by approximately an order of magnitude than those calculated for the NCCH3⋯[SF3NCCH3][SbF6] complex (see Table 3).
| ES | % | PAULI | DISP | % | POL | % | CT | % | Eint (M062X) | |
|---|---|---|---|---|---|---|---|---|---|---|
| Ar⋯[SF3(NCCH3)2]+ | 0.13 | — | 1.05 | −0.87 | 52 | −0.12 | 7 | −0.67 | 41 | −0.48 |
| Kr⋯[SF3(NCCH3)2]+ | −0.13 | 5 | 1.97 | −1.33 | 50 | −0.26 | 10 | −0.95 | 35 | −0.70 |
| Xe⋯[SF3(NCCH3)2]+ | −0.67 | 13 | 3.91 | −2.19 | 44 | −0.52 | 10 | −1.61 | 32 | −1.08 |
| Ar1⋯[SF3Ar][SbF6] | 0.43 | — | 0.72 | −0.66 | 48 | −0.14 | 10 | −0.58 | 42 | −0.23 |
| Ar2⋯[SF3Ar][SbF6] | 0.51 | — | 0.87 | −0.82 | 48 | −0.20 | 12 | −0.69 | 40 | −0.33 |
| Kr1⋯[SF3Kr][SbF6] | 0.22 | — | 2.63 | −1.52 | 45 | −0.57 | 17 | −1.32 | 39 | −0.57 |
| Kr2⋯[SF3Kr][SbF6] | 0.21 | — | 2.72 | −1.57 | 44 | −0.60 | 17 | −1.36 | 39 | −0.60 |
| Xe1⋯[SF3Xe][SbF6] | −0.33 | 6 | 4.30 | −2.48 | 46 | −0.75 | 14 | −1.82 | 34 | −1.09 |
| Xe2⋯[SF3Xe][SbF6] | −0.25 | 5 | 4.04 | −2.35 | 45 | −0.75 | 14 | −1.81 | 35 | −1.13 |
The ALMO-EDA analysis reveals pronounced differences in both the nature and magnitude of the interaction energy components relative to the initial system without Ng atoms. While the interaction between [SbF6]− and [SF3(NCCH3)2]+ was dominated by the electrostatic term, complexes 1 to 3 exhibit a different nature: the ES contribution is only 5–13%, and for the Ar⋯[SF3(NCCH3)2]+ system it takes even a positive sign. DISP becomes the main component for the Ar⋯[SF3(NCCH3)2]+, Kr⋯[SF3(NCCH3)2]+ and Xe⋯[SF3(NCCH3)2]+ complexes (44–52% of share). Charge transfer, which was a minor contributor in the [SF3(NCCH3)2]+⋯[SbF6]− complex, now accounts for 32–41%. The POL term becomes more important for 3 (10%) compared to 1 (7%), consistent with the higher polarizability of Xe than Ar. This situation is repeated in the noble gas complexes 4–6, where the ES contribution is marginal and, in four cases, is repulsive. For these complexes, the mix of DISP and CT is responsible for most of the attractive forces (80 to 90%). It must be emphasized that the interaction energies around −1 kcal mol−1 fall into the lower limit of the range detected for noble gas⋯halonium cation systems studied earlier, where they were around −1 kcal mol−1 for the complexes between [C3H6I]+ and Ar.31
The Bader's QTAIM analysis shows bond paths between sulfur and noble gas atoms for every studied complex (Fig. S2). However, the ρ values range from 0.005 to 0.009 au, which validates that these interactions are very weak and, in fact, close to the limit of detection by this method. At the same time, the remaining interactions in the models increase in strength, as the ρ values for the S⋯N and S⋯F contacts are larger by 0.008 to 0.018 au than in the [SF3(NCCH3)2][SbF6] complex.
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