Annemarie
Ianos†
a,
Jessica
Zhou†
a,
Tongxuan
Qiao
b,
Tao
Wei
c and
Baofu
Qiao
*a
aDepartment of Natural Sciences, Baruch College, City University of New York, New York 10010, New York, USA. E-mail: Baofu.Qiao@baruch.cuny.edu
bSyosset Senior High School, Syosset, New York 11791, New York, USA
cDepartment of Chemical Engineering and Department of Biomedical Engineering, University of South Carolina, Columbia, 29208, South Carolina, USA
First published on 9th March 2026
Microplastics and nanoplastics (MNPs), originating from plastic degradation, have arisen to be a threat to ecology and human health. Alarmingly, the penetration of MNPs across the highly selective blood–brain barrier (BBB) poses an emerging and urgent risk, yet its molecular mechanism remains unexplored. In this work, using long-time-scale (over 28 microseconds) all-atom explicit solvent steered molecular dynamics, we examine the free energy of the passive permeation of four polymer nanoparticles: polyethylene (PE), polypropylene (PP), polystyrene (PS), and polyethylene terephthalate (PET). PE, PP, and PS nanoparticles exhibited a remarkable preference for entering the BBB, attributed to their high hydrophobicity, though they are kinetically trapped in the aqueous phase. In contrast, the PET nanoparticle was energetically unfavored for entering the BBB. Our study further reveals that the PE, PP, and PS polymers can enter the BBB as polymerized nanoplastics, dissolve within the BBB, and eventually exit as dispersed polymer chains, which is specifically true for the amorphous PP and PS nanoparticles. Moreover, the crystalline structure of the PE nanoparticle drives distinct orientations during the penetration process, and the insertion of the PET nanoparticle elevates the hydration of the bilayer interior. Our work advances the knowledge about the mechanism of nanoplastic penetration across the BBB, which could aid in the rational design of therapeutics for nanoplastic penetration inhibitors.
000–52
000 microplastic particles annually.6 Specifically, their presence has been reported in the food chain,7–9 human organs (e.g., liver10 and kidneys11), infant formula,12 and other sources.13–15 Recent studies have demonstrated that microplastics in the bloodstream can lead to neurobehavioral abnormalities,16 cellular toxicity in mammals,17,18 and numerous diseases.19,20 Compared to microplastics, the abundance of nanoplastics is not well-documented or understood due to methodological and technological limitations of nanoplastics detection.21
More alarmingly, MNPs have been very recently detected in the human brain,22 further highlighting the potential risks to human health. Specifically, through the autopsy of cadaver brains, livers, and kidneys, polyethylene (PE) and many other polymers were found to be abundant in these organs, with the highest concentration in the blood–brain barrier (BBB) and brains of dementia patients. The BBB protects the human brain against foreign particles by strictly regulating the exchange of substances across the capillary walls. Its dysfunction is associated with neurodegenerative diseases, such as Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosis.23 A study on mice found that exposure to polystyrene (PS) microplastics caused disruption in the BBB, cognitive defects, and inflammation of the hippocampus.24 These observations underscore the importance of analyzing the penetration of MNPs across human tissues, for instance, the BBB. To the best of our knowledge, no molecular-level understanding has been reported on MNPs crossing the BBB. Related studies are present for nanoplastics,25 polymer-based nanoparticles,26–28 or short polymer chains29 interacting with model lipid bilayers, small organic molecules crossing the BBB,30,31 and the penetration of nanoparticles of oligomer PE chains across a variety of membranes.32
In this study, we quantified the free energy of the passive permeation of polymer nanoparticles crossing the apical bilayer of the BBB using long-time-scale all-atom explicit solvent steered molecular dynamics (MD) simulations. Four types of small-sized polymer nanoplastics were examined: PE, polypropylene (PP), PS, and PET, which have a diameter of approximately 3.1–3.5 nm. These polymers are broadly employed in the industry and everyday applications, including food packaging, wire insulation, carpets, appliances, automotive components, and many more. The passive permeation mechanism33 is examined here as it was found to dominate for nanoplastics with a diameter of 0.293 µm across the BBB,34 while the other mechanisms (e.g., endocytosis) apply to larger, micrometer-sized particles.35 Smaller-sized nanoplastics were found to dominate in personal care products36 and cause more serious damage to carp myocardium.37
The neighbor searching was calculated up to a cutoff distance of 12 Å via the Verlet particle-based algorithm and was updated every 20 timesteps. The short-range Coulombic interactions were truncated at the cutoff distance of 12 Å, with the long-range interactions calculated using the Smooth Particle Mesh Ewald algorithm.46,47 The Lennard-Jones 12–6 interactions were switched off from 10 to 12 Å via the force-switch method. The temperature coupling was implemented using the V-rescale algorithm, with the temperatures of the BBB, polymers, and water/ions separately coupled at 303 K, and a characteristic time of 1 ps. The semi-isotropic pressure was managed using the C-rescale algorithm48 at the reference pressure of 1 bar with a compressibility of 4.5 × 10−5 bar−1 and a coupling constant of 5.0 ps. The integration time step of 2 fs was used with all hydrogen-involved covalent bonds constrained using the LINCS algorithm.49,50
:
1. Control simulations of the BBB bilayer (without polymers) with 150 mM NaCl were first conducted, where we examined the cross-sectional area per lipid (APL) of the BBB at varying temperatures. The obtained APLs agree well with the literature data (Table S2, SI). The APL was obtained to be 48.0 ± 0.7 Å2 at 303 K. The BBB bilayer thickness was estimated to be approximately 4.5 nm at 303 K based on the Z-dimensional distributions of the lipid phosphorus atoms (Fig. S1, SI).
To further verify the simulation protocol above, we simulated a POPC bilayer as another control system at varying temperatures. The calculated APLs agreed well with the literature values (Table S2, SI), validating the force field and the simulation configurations employed here.
The PE chains form a crystalline structure (Fig. 1C), consistent with the crystalline solid phase at room temperature.51 This qualitatively supports the accuracy of this work. To quantitatively verify the models, we estimate the density of these nanoparticles, which is 0.85 g cm−3, 0.75 g cm−3, 1.00 g cm−3, and 1.28 g cm−3 for the PE, PP, PS, and PET nanoparticles, respectively. These values are in agreement with the experimental data of 0.917–0.94 g cm−3 for low-density PE,52 0.85 g cm−3 for amorphous PP,53 1.04–1.05 g cm−3 for PS,54 and 1.38 g cm−3 for PET.55 The minor difference is ascribed to the absence of high pressure when preparing these structures51 and their lower molecular weights (1 kDa here versus tens of kDa or higher in practical applications).
Steered MD is one of the advanced sampling approaches that has been historically developed to accelerate the sampling of rare events.56 For instance, sMD has been applied to describe the penetration of cell-penetrating peptides,57 antimicrobial peptides,58 and gold-based nanoparticles.59 Here, the sMD simulations were conducted using the pulling code in GROMACS. It is a two-step protocol. Firstly, the nanoparticle was pulled downwards along the Z-dimension from 7 nm above the BBB (based on the center-of-mass, COM, of the nanoparticle and the COM of the BBB) to the BBB center. In what follows, the center refers to the COM of the symmetric lipid bilayer or the COM of the whole nanoparticle. A pulling force constant of 5000 kJ mol−1 nm−2 was employed. To better preserve the structure of the BBB bilayer and relax the nanoparticle, a very slow pulling rate of 0.1 nm ns−1 was used. To prevent the flip of the lipid chains, position restraints were applied to their headgroups and tail groups in the pulling stage. The simulation trajectory was saved every 10 ps. The distance between the COM of the nanoparticle and the COM of the BBB was calculated as a function of the simulation time.
Subsequently, the simulation configurations were extracted for a 1 Å interval of the COM(polymer)–COM(BBB) distance in the range of 0–6 nm, generating 61 windows. Umbrella sampling was carried out by setting the pull rate to zero, along with the removal of the position restraints on the lipids. Each of the 61 sampling windows was equilibrated for 60 ns, with a saving frequency of 100 ps per frame. Around 3.66 µs of sMD simulation was conducted for each of the four systems. Therefore, a total of 14.64 µs was conducted for the four systems.
The GROMACS program (gmx wham) was employed to calculate the potential of mean force (PMF), using the Weighted Histogram Analysis Method (WHAM) algorithm.60 The last 40 ns of the simulation of each sampling window were used. The convergence of the PMF calculations is presented in Fig. S2, SI. To calculate the standard deviations of the PMF, each sampling window was divided into 4 blocks, with 10 ns each.
Similarly, the first 20 ns simulations for each sampling window were abandoned for the PMF calculation. The convergence of the calculated PMFs is presented in Fig. S3, SI. To calculate the standard deviations of the PMFs, each sampling window was divided into 3 blocks with 10 ns each for PE/PP/PS and 4 blocks with 25 ns each for PET.
The free energy of the nanoparticle insertion into the BBB center from the bulk water phase can thus be obtained from the difference between the PMF in the membrane interior (i.e., 0 kJ mol−1) and the values in the water phase. The latter was obtained based on the PMF value at ξ = 6 nm, where the convergence of PMF has been reached, evidenced by the plateau starting at around 5 nm. The values were obtained to be −479 ± 22 kJ mol−1 for PE, −562 ± 26 kJ mol−1 for PP, −237 ± 33 kJ mol−1 for PS, and 108 ± 30 kJ mol−1 for PET. They roughly align with the hydrophobicity of these polymers that PE ≈ PP > PS > PET. For instance, the water contact angles on solid polymers have been experimentally reported to be 86°–93° for PE, 85°–96° for PP, 72°–86° for PS, and 72°–77° for PET.61 PE and PP are highly nonpolar and have no measurable dipole moment, whereas the styrene group on PS provides an elevated polarity (the styrene monomer has a dipole moment of around 0.18 D62) compared to PE and PP. It was also suggested that the interactions between styrene and cholesterol could enhance the attraction between lipid membranes and PS nanoparticles, thereby promoting PS nanoparticle insertion.34 In contrast to PS, the introduction of the ester functional groups in PET further improves the polarity with a dipole moment of around 2.7 D,63 which is close to the dipole moment of liquid water (2.9 D64). PET is thus the most hydrophilic nanoparticle investigated here.
To further validate the increase in the hydrophilicity of these polymer nanoparticles, we defined a feature of the relative hydrophilicity.65 In this regard, we first calculated the short-range Coulombic and LJ interaction energies, denoted as E(Coulombic) and E(LJ), respectively, between the nanoparticles and all neighboring water molecules. Accordingly, the relative hydrophilicity is defined to be the ratio of the Coulombic and the Lennard-Jones interactions, E(Coulombic)/E(LJ) (Table 1). Specifically, a positive value of the ratio, originating from the attractive Coulombic interaction, stands for a higher hydrophilicity; in contrast, a negative value of the ratio, originating from the repulsive Coulombic interactions, describes a higher hydrophobicity. For instance, the repulsive Coulombic interactions for the PE and PP nanoparticles support their highly nonpolar nature. In contrast, the PET nanoparticle displays attractive Coulombic interactions with water, which are much stronger than the corresponding LJ interactions with a ratio of E(Coulombic)/E(LJ) = 2.0, supporting the relatively hydrophilic feature of the PET nanoparticle.
| PE - water | PP - water | PS - water | PET - water | ||
|---|---|---|---|---|---|
| a In these control simulations, the BBB bilayer and 0.15 M NaCl were not included. The nanoparticle (or polymer chain) was dissolved in a cubic water box with an edge length of around 6.5 nm (or 6.0 nm for the single chains). Each simulation run for 200 ns, with the last 100 ns used for the energy calculations. b Coulombic and Lennard-Jones 12–6 (LJ) energies were calculated up to 1.2 nm, which is the cut-off distance for the short-range interactions in the atomistic simulations. Such post-simulation calculations were conducted using the gmx mdrun -rerun program, which excludes the long-range Coulombic interactions. c Ratio = E(Coulombic)/E(LJ). | |||||
| Nanoparticle (10 chains) | Coulombicb | 45 ± 15 | 75 ± 14 | −438 ± 47 | −2792 ± 130 |
| LJb | −1554 ± 41 | −1360 ± 62 | −1443 ± 48 | −1396 ± 63 | |
| Ratioc | −0.03 | −0.06 | 0.30 | 2.0 | |
| Single Chain | Coulombicb | 10 ± 7 | 14 ± 6 | −86 ± 21 | −431 ± 41 |
| LJb | −332 ± 19 | −307 ± 18 | −312 ± 20 | −294 ± 35 | |
| Ratioc | −0.03 | -0.04 | 0.28 | 1.46 | |
By comparing the results for the nanoparticles and the single polymer chains, we further find that the assembly of the PE, PP, and PS chains into nanoparticles does not affect the polarity, as demonstrated by the comparable values of the ratio. Whereas the assembly of PET chains remarkably elevates its polarity (ratio = 1.46 for single chains vs. 2.0 for nanoparticles). That is, its assembly into nanoparticles could embed the nonpolar groups within the nanoparticle and expose the polar ester groups to the surrounding aqueous environment. Such local structural orientation was also found in nanoparticles assembled using a homopolymer poly(propylene sulfone) in our recent work.66
We also notice that the PP nanoparticle displayed a relatively stronger preference for entering the BBB than the PE nanoparticle, though their hydrophobicity is highly similar. Such a difference is ascribed to the nanoparticle dissolution process when positioned in the BBB center, which is energetically more preferred for the amorphous PP nanoparticle. As demonstrated in the simulation snapshots in Fig. 2, the PP and PS nanoparticles displayed elevated dissolution when located inside the BBB compared to the PE and PET nanoparticles. A more detailed discussion will be presented in the following section.
Consequently, with the increase in the polarity from PE/PP, to PS, to PET, their hydration becomes more energetically favorable, and the interactions with the nonpolar interior of the BBB bilayer become less favorable, which collectively play a decisive role in the free energy of insertion in Fig. 2.
It is noteworthy that, though the insertion of the PE, PP, and PS nanoparticles from the water phase to the BBB center is energetically favored, such transports need to overcome a free energy barrier on the BBB/water interface (around 3.5–3.7 nm from the BBB center). The free energy barrier is obtained to be approximately 52, 46, and 32 kJ mol−1 for the PE, PP, and PS nanoparticles, respectively. Therefore, though their insertion into the BBB bilayer from a water phase is energetically favored, these nanoparticles are kinetically trapped in the aqueous solution.
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The result is presented in Fig. 3. At the BBB center, the value of O(r) = 0.96 ± 0.06, suggesting a strong vertical orientation of the PE nanoparticle relative to the bilayer plane (Fig. 3A). A similar orientation was found when the PE nanoparticle crosses the BBB surface (Fig. 3B) with O(r) = 0.94 ± 0.04 at 3.0 nm above the BBB center. A similar orientation preference was also observed for the “forever chemical”, per- and polyfluoroalkyl substances (PFAS) chains, at the lipid bilayer/water interface.68 When the nanoparticle is detached from the BBB, it prefers to lie on the BBB surface horizontally with O(r) = −0.48 ± 0.02 at 4.0 nm above the BBB center (Fig. 3C). Note that half of the bilayer thickness is around 2.75 nm based on the lipid phosphorus atoms (Fig. S1, SI). In contrast, when the PE nanoparticle is in the water phase (more than 5 nm above the BBB center), it shows no preferred orientation with O(r) ≈ 0 (Fig. 3D). The random orientations displayed much larger fluctuation (0.0 ± 0.4) owing to a greater degree of freedom of 3-dimensional rotation in the water phase compared to those inside the bilayer and on the BBB/water interface.
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| Fig. 3 Orientation of the PE nanoparticle as a function of the distance from the BBB center. The error bars represent the ensemble-based standard deviations. Demonstrated in the insert are the definitions of the angle and the distance in eqn (1). (A) In the BBB interior and (B) at the BBB/water interface, the vertical orientation dominates. (C) On top of the BBB/water interface, the parallel orientation dominates. (D) In the water phase, random orientations exist. Three representative orientations (tilted in gray, vertical in cyan, and parallel in orange) are overlaid on the same plot. | ||
Therefore, the insertion of the PE nanoparticle is subject to the change in the PE nanoparticle orientation from a horizontal orientation on top of the surface (no touching) to a vertical orientation when touching the BBB.
In the sMD simulations (Fig. 2), we observed that the nanoparticles could dissolve inside the BBB bilayer. To confirm the observation, we conducted unbiased MD simulations. Each simulation lasted 600 ns, which supported the gradual dissolution of the polymer nanoparticles when positioned in the BBB interior (Fig. 4A and B). The dissolution of nanoparticles inside the lipid membrane interior is a phenomenon that has been consistently observed in previous all-atom and coarse-grained simulations.26,32,70,71 Specifically, the dissolution was evidenced by the increases in the BBB-nanoparticle potential energy and the solvent-accessible surface area (SASA) of the nanoparticles as a function of the simulation time. The dissolution is relatively more favored for the amorphous and nonpolar PP and PS nanoparticles compared to the PE (crystalline) and PET (relatively polar) nanoparticles.25 Specifically, the gradual dissolution of the PP nanoparticle lasted over the whole course of the 600 ns simulations. Such slow kinetics make it highly computationally challenging to achieve the precise convergence of the PMF calculations. As demonstrated in Fig. S1, the PMF curves undergo minor changes throughout the sMD simulations. The complete convergence of the sMD simulations requires a much longer simulation duration, which is inaccessible to us, given the fact that each of the eight sMD simulations took around 30 days on our GPU-equipped computers.
We further noticed that when the PET chains are located inside the BBB, the BBB interior becomes more hydrated (Fig. 4C), similar to the observation for amphiphilic random heteropolymers when embedded inside lipid bilayers.72 The insertion of the nonpolar PS, PP, and PS polymers showed no impact on the hydration of the BBB interior.32 Moreover, all BBB bilayers are found to expand with the nanoparticles positioned inside, which is most pronounced for the PET nanoparticle (around an 8.8% increase; Fig. 4D and Table S3, SI). Taken together, these findings suggest that, in contrast with the nonpolar PE, PP, and PS polymers, PET displayed elevated polarity due to the presence of the relatively hydrophilic ester group, which inhibited the preference of entering the BBB (Fig. 2) and deforming (i.e., expanding) the structure of the BBB bilayer (Fig. 4).
Furthermore, the PMF profiles of the nanoparticles reach a plateau at a distance of around 5 nm from the BBB center (Fig. 2), supporting the convergence of the interactions between the BBB membrane and the nanoparticles. Given that the radius of the nanoparticles is around 1.55–1.75 nm and the half of the thickness of the BBB bilayer is around 2.75 nm (Fig. S1, SI), it is supported that the nanoparticles display negligible long-range interactions with the BBB slightly beyond their contact range. Similarly, the PMF profiles for the single-chain polymers are converged at a shorter distance of around 3.5 nm from the BBB center, given the smaller size of the single polymer chains (Fig. 5).
Note that the diameters of the nanoparticles investigated here (3.1–3.5 nm) are smaller than the thickness of the BBB bilayer (4.5 nm). The size impact of nanoplastics crossing the BBB needs further study.34 Specifically, larger-sized nanoplastics (than the BBB bilayer thickness) might disrupt the membrane to a larger extent and display different energetic preferences crossing the bilayer.
Here, we exclusively examined the penetration of nanoparticles across the apical bilayer of the BBB. Given the similar compositions between the apical and basolateral bilayers,30 the overall penetration hypothetically follows a stepwise mechanism: nanoplastics enter the apical bilayer from blood, dissolve, and exit as dispersed polymer chains; the hydrophobic polymer chains aggregate into nanoplastics in the cytosol; eventually, the new nanoplastics enter the basolateral bilayer, dissolve, and exit as dispersed polymer chains into the brain. Collectively, the dural barrier of the apical and basolateral bilayers underscores the BBB's highly selective nature.
Unbiased atomistic MD simulations showed that these nanoparticles can dissolve when located in the BBB interior. This behavior is particularly pronounced for the nonpolar, amorphous PP and PS nanoparticles, as evidenced by their interactions with the BBB and their surface area. The high free energy barrier for the nanoparticles exiting the BBB, combined with their dissolution in the BBB interior, suggests that they enter the BBB as polymerized nanoplastics but exit as single polymer chains. This is supported by the substantial drop in the free energy barrier for single polymer chains exiting the BBB.
We further find that the PE nanoparticle adopts different anisotropic orientations depending on its location: parallel to the bilayer normal when located in the BBB interior and at the BBB/water interface, parallel to the bilayer plane right on top of the BBB bilayer, and no preferred orientation when positioned in the bulk water phase. In contrast to PE, PP, and PS nanoparticles, the relatively more polar PET nanoparticle increases hydration of the hydrophobic BBB interior and expands the BBB bilayer, despite showing an unfavorable preference for entering the BBB.
Our study represents a first step toward understanding the molecular mechanism by which nanoplastics passively penetrate across the apical bilayer of the BBB. For a complete picture of the MNP penetration, further studies are needed to investigate the factors, such as nanoplastic size, polymer degree of polymerization, polymer cross-linking, and other possible penetration mechanisms (e.g., endocytosis). These studies together will aid in the rational design of therapeutics to prevent MNPs from crossing the BBB. Research on the de novo design of peptides to capture plastics exists.51,73–76 Nevertheless, the abundance of the hydrophobic (tryptophan and phenylalanine) and positively charged (arginine) amino acids73 makes such peptides inappropriate as plastic-penetration inhibitors: the former will lower the solubility of peptides, and the latter could promote their cell penetration.77 Therefore, the rational design of plastic-penetrating inhibitors is still in its infancy.
Footnote |
| † A. I. and J. Z. contributed equally. |
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