Vikas Kumar Jhaa,
Sunil Kumar Patela,
Devarapalli Chenna Raob,
Kovuru Gopalaiahb and
E. Siva Subramaniam Iyer
*a
aSchool of Chemical and Materials Science, Indian Institute of Technology Goa, Farmagudi, Ponda, Goa 403 401, India. E-mail: vikas19251104@iitgoa.ac.in; sunil21251103@iitgoa.ac.in; essiyer@iitgoa.ac.in
bDepartment of Chemistry, University of Delhi, Delhi 110 007, India. E-mail: dchennarao@yahoo.co.in; gopal@chemistry.du.ac.in
First published on 7th May 2025
Bis(indolyl)methane (BIM) derivatives are an important class of molecules that have shown vivid applications. The photo dynamics of BIM derivatives has been studied through ultrafast spectroscopy. It has been observed that the acidic medium plays a vital role in governing the spectral characteristics of BIMs, imputing to the ambivalent nature of BIMs under acidic conditions. We noticed that the dissociation of meso-hydrogen is enhanced under acidic conditions, while no such enhancement is observed under alkaline and neutral conditions. We further perceived that the dissociation of meso-hydrogen takes precedence over the dissociation of N–H bonds, even in an acidic medium. Quantum chemical calculations support the experimental observations. Although the functionalisation with electron-withdrawing or electron-donating groups seems to affect photophysical properties such as spectral shift, quantum yield, etc., tuning the acidic medium plays a significant role.
A particularly noteworthy structural motif present in both natural and synthetic compounds is the indole scaffold, which demonstrates exceptional versatility and potential.2–9 Indole derivatives, particularly bis(indolyl)methanes (BIMs), are integral to numerous bioactive molecules, fine chemicals, pharmaceuticals, agrochemicals, and functional materials.10–18 These compounds exhibit a broad spectrum of biological activities—including anti-inflammatory, antibacterial, anti-infective, and anticancer properties—while also presenting valuable opportunities for research and development.4,19–24 The bioavailability and reactivity of BIMs can be affected by the intermolecular interactions between the molecules and cellular components. This has inspired many dedicated researchers globally, including us, to concentrate on the synthesis of BIMs and their derivatives.3,25–32 Furthermore, derivatives of BIMs are being actively studied, showcasing tuneable properties that enhance their potential applications in various fields. For example, the oxidised derivatives of BIMs are used for developing chemical sensors.33,34 The aggregation-disaggregation induced photophysical properties can be tuned by altering the microenvironment.35–37 Therefore, understanding the molecular design strategies and their inter-relation with photophysical properties as well as molecular excited state dynamics depending on the solvent environment of BIM molecules become important. The future of this research area is promising and offering numerous opportunities for discovery and advancement.38–40
It would be beneficial to delve into the photophysical properties of BIM derivatives, particularly focusing on the excited state characteristics that influence their interactions. The BIMs exhibit a prominent absorption band in the UV range (220 nm to 290 nm), attributed to an allowed ππ* intra-ligand transition. In the oxidised BIMs, an additional low-energy band appears between 490–530 nm, corresponding to intra-ligand or ligand-to-ligand charge transfer transitions.33,34 These assignments arise from observations that when aryl groups substituted on the bridging methyl carbon contain electron-withdrawing heteroatoms, the excitation to a higher energy band generates an extra emission peak centred at 560 nm, which is associated with the charge transfer state.41,42 Theoretical calculations utilising time-dependent DFT confirm the existence of two sets of absorption bands. The HOMO and LUMO molecular orbitals are primarily localised on the indole and meso-substituted aryl groups, respectively, and contribute to the high-energy absorption profile.39,43–45
Phenyl(bisinodyl)methane (BIM I, Fig. 1) displays aggregate formation in aqueous environments. However, as polarity diminishes and relative hydrophobic microenvironment enhances, e.g. when confined in micellar systems, a disaggregation phenomenon occurs. Notably, the emission intensifies with increasing charge on the surfactant head groups. A similar confinement effect is noted in β-cyclodextrin (β-CD), where an increase in emission intensity is attributed to the disaggregation process.35–37
In the context of BIM derivatives, reversible deprotonation of the –NH bond can occur. Given that indole has a pKa exceeding 16, conventional protonation of the –NH bond is unlikely. However, under specific conditions, the bridging carbon's tendency to lose the meso proton and form a coloured compound invites further investigation into the dynamics of these molecules. This study presents the ultrafast excited-state dynamics of three distinct aryl-substituted BIM derivatives, with their structures depicted in Fig. 1. Two derivatives feature electron-donating or electron-withdrawing substituents at the fifth position of the indole ring, while the third remains unsubstituted. We analysed the excited-state dynamics across varying acidity levels for these compounds, as well as their behaviour in sodium dodecyl sulphate (SDS) micellar medium. Our findings highlight an increased likelihood of meso-H deprotonation in the excited state compared to the ground state, an effect that is amplified when steric factors induce molecular distortion. Interestingly, the absorption spectra of BIM I exhibit minimal sensitivity to its local environment.
The theoretical calculations were performed using GAUSSIAN 16 package.46 The visualisation of the molecule is done by Gauss-View 6.0 molecular visualisation program. The geometries of BIM derivatives, protonated and oxidised forms were optimised using Becke's three parameters with the Lee–Yang–Parr hybrid exchange-correlation function (B3LYP) with the basis set of 6-31G (d).47–50 The geometry optimisation for the lowest excited singlet state (S1) using time-dependent DFT (TD-DFT) calculations using the same functional and basis sets. All the calculations were performed considering molecules in the gas phase.
The respective fluorescence spectra of BIM I to III do not exhibit any shifts with changes in acidity of the medium, suggestive of the same excited state for all the molecules. The relative quantum yields of the three compounds with respect to indole are tabulated in Table 1.
Name | λmaxabs (nm) | λmaxems (nm) | Δλ (nm) | Relative QY |
---|---|---|---|---|
Indole | 271 | 329 | 58 | 1 |
BIM I | 282 | 351 | 69 | 0.15 |
BIM II | 279 | 334 | 55 | 0.48 |
BIM III | 291 | 352 | 61 | 0.014 |
The emission spectra are obtained by exciting the samples at 280 nm and are corrected for absorbance effects while calculating the quantum yields. The quantum yield is maximum in the presence of the electron-donating methoxy group, whereas the chloro-derivative has the lowest quantum yield. Earlier investigations on BIM I have reported an enhanced emission attributed to the hindered rotations in viscous media.35 In BIM II, the bulky methoxy group can cause a similar effect, consequently increasing the quantum yield. These observations are in line with the earlier reports on similar compounds.38–40 It is worthwhile to note that the fluorescence spectrum of BIM-II is significantly narrow and remarkably resembles indole (Fig. S1†). It is proposed that indole has two excited states viz. La and Lb, and the latter contributes to fluorescence.53 It is possible that due to the relative orientation of the indole rings in BIM II, the molecules retain indole features. While in BIM I and BIM III these two states are possibly coupled resulting in broad fluorescence spectra. However, the coupling cannot be conclusively said. A significant drop in the quantum yield for BIM III could not just be associated with the halogen effect of chlorine, but to some other excited state process involved which cannot be concluded from steady state spectroscopy measurements alone. Earlier works on BIM I have reported the fluorescence lifetime of 1–1.5 ns that can go up to 3 ns in restricted environments.36,37 An effect of solvent is also noticed. A decrease in quantum yield in aqueous solvents are ascribed to aggregation phenomena. The aggregation manifests as distinct changes to the steady state spectra accompanied by loss of vibronic structures in the absorption spectrum. In our measurements all molecules retain vibrational features thus we rule out aggregation as a cause of decreased quantum yields.
Femtosecond transient absorption spectroscopic measurements were performed to ascertain the excited-state dynamics of BIM derivatives. Equivalent experiments were carried out in neutral (prepared methanolic solution), acidic, and alkaline conditions (10 equiv.). The samples were pumped at 285 nm. During the course of measurements, the polarizations for the pump and the probe were maintained parallel with respect to each other. The kinetic traces in cross-polarized conditions yielded similar kinetic traces, hence ruling out rotational anisotropy (Fig. S3†). Under acidic conditions, the laser excitation resulted in the evolution of a new band centred at 500 nm (Fig. S4†). Such a band was not observed in neutral and alkaline conditions. This band has already been assigned to the oxidised form of BIM derivatives.33,34,39 The oxidised form is obtained by the loss of the meso hydrogen, resulting in an extended conjugation all the way from the phenyl group to the indole ring. This increased conjugation is responsible for the colour, which is used as a marker for sensor applications.54 The absorption band in the region 450–550 nm in oxidised BIMs is assigned to the intra-ligand charge transfer.39,55 In the case of BIM III, the chloro group due to its electron withdrawing nature can result in a less pronounced charge transfer state and results in blue-shifted spectra compared to BIM I. We suspect that the BIM derivatives should retain some of the indole-like features, and to ascertain this, experiments were performed in methanolic solutions of indole as well. Within the probed region (450 nm to 750 nm), the indole shows a strong excited state absorption which decays over a few nanoseconds. Besides this, no other unusual feature is observed (Fig. S5†). The excited state absorption (ESA) originates from a stabilised excited state. This state is formed within few picoseconds post-excitation. The sub-picosecond internal conversion reported for indole is outside the range of wavelengths probed in current investigations. The invariance in the kinetic traces raises doubt over the role of the N–H bond on the excited state dynamics of indole, as reported earlier.56,57 It could be argued that the states are missed due to the time resolution of the experiment. However, even if this were the case, the formation of the excited state should have been affected, which does not appear to be the case. Thus, the role of N–H, if at all, could be important when indole is excited to higher energy levels with UV excitation at wavelengths less than 270 nm. The earlier experiments have also indicated the wavelength selectivity on the kinetics of the excited states when excited to higher energies.58,59 However, in this work the samples are excited at 285 nm, which is close to the red edge of indole.
The TA spectra of BIM derivatives are dominated by excited state absorption (Fig. 3 and S6–S8†) in the entire probe range. In addition, a negative signal is observed under acidic conditions. The spectral features of absorption are similar to those of indole. This suggests the indole-like features are still retained in the molecule. The negative signals and the ESA will be discussed later, as we suspect these features come from distinctly different molecules. The decay of ESA in BIM III is significantly faster. The kinetic traces of indole and BIM derivatives in neutral conditions at different wavelengths are shown in Fig. 4. The kinetic traces in acidic and alkaline conditions are shown in Fig. S9.† The kinetic traces of BIM I are faster than indole but slower than the chloro derivative (BIM III). This aligns with our observation from steady-state measurements, where we have observed very low quantum yields. Thus, the excited state reached upon excitation is deactivated, which could possibly be due to hydrogen bonding in BIM-H, and the halogen effect and the intra-ligand charge transfer effects in BIM III. The spectral and kinetic features are similar in alkaline conditions. This is not unusual as the pKa of indole is close to 18 and not expected to ionise in the ground state to alter the spectral features. The most interesting features are noted under acidic conditions. In addition to the routine ESA, a negative signal is observed. The amplitude of the negative signal is in the order BIM I > BIM III > BIM II. Although the negative signal is not distinctly apparent from the TA spectra, a careful examination shows that the signals in the blue edge are weak. This suggests that the ESA and the negative signal cancel each other. The evolution-associated decay spectra obtained by global kinetic analysis clearly revealed the negative signals at 500 nm for all three molecules under acidic conditions (Fig. S6–S8†). Now, this band is observed at the same wavelength as the lowest energy absorption band of oxidised BIM. Hence, we assign this band to the bleach of the ground state of the oxidised form. Also, this band is very short-lived. The average lifetime of the negative signal is around 3 ps for BIM I, 5 ps for BIM II, and 10 ps for BIM III (Table ST1†). This oxidised form could be generated by deprotonation of the meso-H. The relative amounts of oxidised form increases with each scan. However, the extent is different. The ratio of signals corresponding to the native molecules and oxidised molecules can be a good measure of the same. The ratio of ΔA at 500 nm and 550 nm at a delay of 500 fs as a function of scan number is shown in Fig. S10.† The extent of deprotonation is highest for BIM-I showing its propensity to lose the meso H to form the oxidised product. Under strongly acidic conditions, the only likelihood of protonation is at the N centres of the BIM derivatives. This would induce a positive charge on the indole rings, which may affect the geometry of the molecules. As a result, the molecule may acquire a different geometry upon excitation, which promotes the loss of H at the meso position. This would serve a dual purpose: reduce the positive charge, and acquire a more stable orientation. In the neutral and alkaline cases, we did not see any significant population giving rise to a negative signal. A short component with a lifetime of tens of picoseconds is noticed, but it contributes mainly to the build-up of the ESA. Thus, it may be attributed to the formation of low-energy excited state from a locally excited state reached by the excitation of a 285 nm pump. To ascertain photochemistry, the solutions were kept in ambient light for five days. During this period, the absorption band at 500 nm became stronger (Fig. 5). When pumped at 500 nm, the light-adapted samples resulted in the same GSB kinetics as observed with acidic samples (Fig. 6). The photochemical conversion with BIM-III was negligible. Hence, an equivalent experiment could not be performed with BIM-III. Based on observations so far, we conclude that the excited molecules lose the meso H and form the oxidised product under acidic conditions.
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Fig. 3 TA spectra (above) and EADS (below) of BIM I in a neutral medium and in the presence of 10 equivalents of acid. |
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Fig. 4 Kinetic traces of BIM derivatives and indole under neutral conditions at 500 nm, 550 nm, 600 nm, and 650 nm. |
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Fig. 5 Comparison of absorbance of BIMs before laser irradiation (black line) after irradiation (blue circle) and after keeping five days in ordinary light after irradiation (green star). |
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Fig. 6 The 2D plots of TA spectra with 500 nm pump excitation for BIM I and BIM II (in acidic methanol that is kept for five days in ordinary light after 285 nm excitation). |
In order to substantiate the experimental observations, quantum chemical calculations have been carried out. The influence of solvent is not taken into consideration, although it is known that dielectric medium can affect the energy levels. Our intention is to monitor the strength of meso CH bond in ground and excited state, which can be estimated from gas phase calculations. The calculations were executed on native BIM derivatives, oxidised BIM derivatives, and protonated BIM derivatives where the indole nitrogen is protonated. In the oxidised molecules, we have assumed conjugation extends only to one indole and protonation is considered for the other indole moiety. A common feature of all systems is that HOMO orbitals are localised over the indole rings, while in the LUMO orbital, the electron density is shifted towards the aryl groups (Fig. S11 and S12†). This observation is in line with earlier studies on similar molecules.60 An enhanced electron density over the bridging carbon could lose proton more quickly than the protonated nitrogen. This explains why the meso-H is lost to yield an oxidised product. Indubitably, we understand the protonation of indole might not be taking place in the ground state and is evident from the absorption spectra where there is no change irrespective of the medium. We have made this hypothetical system so that a reasonable understanding be developed for the process in excited states (Fig. S13 and S14†). The optimised geometries of BIMs and oxidised BIMs are shown in Fig. 7. It is worthwhile to notice that the relative orientations of the two indole rings have the nitrogen face in opposite directions in BIM I and BIM III. Upon oxidation, one of the rings rotates, and both nitrogen faces are on the same side. This trend is the opposite for BIM II, where in the oxidised form the nitrogen atoms continue to be on opposite sides. However, this creates increased crowding due to the bulky methoxy groups and is expected to be unfavourable. Consequently, oxidation is not favoured. This explains the decreased propensity of BIM II to lose the meso H and is reflected in our experiments, where the negative bleach band is weak. However, the molecule's tendency to lose meso H can be triggered by laser irradiation (Fig. 5). In the excited state, electron density on the meso-C increases and rotation gets hindered, hence the formation of the oxidised product becomes more feasible.
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Fig. 7 Optimised ground state geometries of BIM I, BIM II, and BIM III (above) and their oxidised form (below). |
Further evidence for the formation of the oxidised product was obtained by comparing the orbital energies of the protonated, oxidised and native molecules. The energy level diagram considering the three HOMO and three LUMO levels are shown in Fig. 8 and S15.† Theoretical calculations of oxidised BIM derivatives strongly suggest the formation of oxidised BIM in an acidic medium. The HOMO → LUMO energy gap of oxidised BIM derivatives come close to the ground state bleach signal that we are getting in acidic methanol. The HOMO of the oxidised BIM derivatives is close to the normal BIM derivatives suggesting a stable oxidised product. LUMO of oxidised BIM derivatives are stabilised as compared to normal form, and due to enhanced conjugation, the electron density on the benzene ring increases in LUMO. The more localised electron density in oxidised BIM suggests the charge transfer within the molecule. The energy level and MO diagrams of all derivatives and their optimised geometries are listed in the ESI.†
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Fig. 8 From left to right: Energy level diagram of (a) BIM I, (b) protonated BIM I, (c) oxidised BIM I, (d) oxidised-protonated BIM I. |
Further evidence for the decreased chances for meso-H dissociation is obtained from the corresponding bond strength of the C–H vibration (Table ST2†). It can be seen that for the methoxy derivative the C–H bond is stronger in the hypothetical protonated state. In contrast, the bond is weaker for the remaining two derivatives. Now, although the protonated state does not exist in the ground state, its existence in the excited state is not ruled out. It is well known that the excited state acidities are significantly different from those of the ground state. The change in pKa can be as high as to make a base act as an acid and vice versa. It is possible that the BIM derivatives take up the proton in the vicinity, which eventually dissociates to give rise to an oxidised form. The TD-DFT calculations show substantial reorientation of the indole rings around the meso carbon (Fig. S16 and Table ST3†) and also reveal that the meso C–H bond weakens further in the excited state. The frequency of C–H bond is tabulated in Table ST4† and the optimised energies for all the molecules are tabulated in Table ST5.† It is understood that the role of solvent is crucial in stabilising the excited states. Thus, directly comparing the gas phase calculations and those with solution phase experiments is not ideal. However, the calculations support the weakening of the meso C–H bond under acidic conditions, which is the contention drawn based on experimental observations.
So far, the discussion has shown that meso H dissociation is enhanced under acidic conditions. In order to ascertain this, an ideal experiment would be to study the photophysics in non-polar aprotic solvent. However, the solubility of BIM derivatives is poor in such solvents (Fig. S17†). So, we have monitored the photophysics in SDS micelles. A recent work on BIM I in SDS micelles has shown that it is encapsulated in the micelle and remains in unaggregated form.32,36,37 In the experiments presented in this work, the SDS concentrations are maintained four times above CMC (1 CMC ∼8.2 mM) to ensure molecules are isolated. Such encapsulation results in increased solubility of BIM derivatives, which otherwise have poor solubility in aqueous medium because of aggregation. Further, the protonation of indolic nitrogen is prevented in this fairly non-polar microenvironment. Under these conditions, it is expected that the photoexcitation should not result in the breaking of the C–H bond. Nearly a five-fold enhancement in fluorescence was observed for BIM I and BIM II beyond the critical micellar concentration, indicating a restricted environment due to encapsulation (Fig. S18†). The BIM III, however, did not show similar enhancement. This could be attributed to a relatively higher solubility of BIM III in water than the other two derivatives. The transient data give clear evidence of the hindrance to the dissociation of meso-hydrogen in surfactant assemblies. The slow decay beyond 10 ps in SDS, post-excitation, is significantly slower for all three molecules (Fig. 9 and S19†). Hence, the slow component can be ascribed to de-excitation due to reorientation. This process is faster in methanolic conditions. However, it is interesting to note that the initial kinetics below 10 ps is the same in SDS, alkaline, and neutral conditions. This is true for all three derivatives. However, the initial kinetics are significantly different under acidic conditions. In the case of BIM I, a negative signal in acidic conditions was observed at wavelengths around 500 nm. In SDS micelles, no such negative signal is observed (Fig. 9). Instead, an immediate rise similar to alkaline and neutral conditions is observed. The sub 10 ps kinetics under acidic and micellar medium completely overlap with each other as we move towards the red wavelengths. This feature is observed in aqueous and alkaline medium as well. BIM II and BIM III also show similar features where the decays of the ESA are different in acidic conditions, while they are comparable in restricted micellar environments, alkaline and neutral mediums (Fig. S20–S22†). The computational calculations have indicated that the protonation of the indole moiety reduces the HOMO–LUMO gap, which results in the change of colour. Under the restricted non-polar environment provided by the SDS micelles, protonation is prevented, due to which the loss of meso-H is also prevented. Hence, it is beyond doubt that the acidic conditions are necessary and play a significant role in controlling the ultrafast dynamics post-excitation.
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Fig. 9 Kinetic traces at 500 nm and 650 nm of BIM I, BIM II, and BIM III in neutral, alkaline, acidic and SDS micellar medium. |
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d5ra02015h |
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