Open Access Article
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Uncertainty in the era of machine learning for atomistic modeling

(Note: The full text of this document is currently only available in the PDF Version )

Federico Grasselli , Venkat Kapil , Silvia Bonfanti , Kevin Rossi and Sanggyu Chong

Received 11th March 2025 , Accepted 5th June 2025

First published on 9th June 2025


Abstract

The widespread adoption of machine learning surrogate models has significantly improved the scale and complexity of systems and processes that can be explored accurately and efficiently using atomistic modeling. However, the inherently data-driven nature of machine learning models introduces uncertainties that must be quantified, understood, and effectively managed to ensure reliable predic- tions and conclusions. Building upon these premises, in this Perspective, we first overview state-of-the-art uncertainty estimation methods, from Bayesian frameworks to ensembling techniques, and discuss their application in atomistic modeling. We then examine the interplay between model accuracy, uncertainty, training dataset composition, data acquisition strategies, model transferability, and robustness. In doing so, we synthesize insights from the existing literature and highlight areas of ongoing debate.


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