Onni Veteläinen*a,
Morsal Babayana,
Lassi Pihlava
b,
Abdul Rahman Abid
a,
Antti Kivimäki
c,
Edwin Kukkb,
Noelle Walshc,
Samuli Urpelainen
a,
Olle Björneholmd,
Marko Huttula
a,
Matti Alataloa,
Minna Patanen
a and
Sergio Díaz-Tendero
*efg
aNano and Molecular Systems Research Unit, Faculty of Science, P.O. Box 3000, 90014 University of Oulu, Finland. E-mail: onni.vetelainen@oulu.fi
bDepartment of Physics and Astronomy, 20014 University of Turku, Finland
cMAX IV Laboratory, Lund University, 22100 Lund, Sweden
dDepartment of Physics and Astronomy, Uppsala University, Box 516, 751 20 Uppsala, Sweden
eDepartamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain. E-mail: sergio.diaztendero@uam.es
fCondensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
gInstitute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
First published on 22nd April 2025
Hydrogen migration is a ubiquitous phenomenon upon dissociation of organic molecules. Here we investigate the formation of a H3O+ fragment after core-level photoionization and Auger decay in aminobenzoic acid molecules – a process that requires the migration of at least two hydrogen atoms. Using photoelectron–photoion coincidence spectroscopy, the formation of a H3O+ fragment is observed to be more probable in ortho-aminobenzoic acid than in meta- and para-aminobenzoic acid. Energy-resolved Auger electron–photoion coincidences are measured for the ortho-isomer to investigate the internal energy dependence of the fragmentation channels, most notably of those producing H3O+. The corresponding fragmentation channels and their mechanisms are investigated by exploring the potential energy surface with ab initio quantum chemistry methods and molecular dynamics simulations. Excited-state modeling of dicationic ortho-aminobenzoic acid is used to interpret features in the Auger spectra and identify the electronic states contributing to the signals in the Auger electron photoion coincidence map. We show that populating low-energy excited states of the dication is sufficient to trigger hydrogen migration and produce H3O+ efficiently.
Our previous photoelectron–photoion coincidence (PEPICO) study of oABA and mABA found that the fragmentation channels following core ionization and Auger decay are sensitive to the positioning of the functional groups, notably H3O+ and H2O production rates are higher in the ortho-isomer.4 The molecular geometry of aminobenzoic acid requires at least two hydrogen migration processes to form the H3O+ fragment. Hydrogen migration is a ubiquitous process in various chemical reactions and fragmentation processes following radiation damage.5–8 The isomer dependency of H3O+ production in ABAs offers an excellent case study to understand such processes better. Being the protonated form of water, H3O+ itself is a common molecular ion in the universe, playing an important role in both terrestrial systems and atmospheric processes, objects in the solar system and even in interstellar media.9–16 H3O+ is often formed from water and organic molecules and clusters following photoionization, for example by cosmic rays in the upper atmosphere. Signs of complex organic molecules, including amino acids and their precursors, have recently been reported to be found in asteroids17,18 and meteorites,19 and their formation and degradation in interstellar medium, like in ice grains, have gained a lot of interest.20–22
The formation mechanisms of H3O+ have been studied using various experimental techniques such as time-of-flight (TOF) mass spectroscopy as well as ab initio computational methods.5,23–30 For example, in a pump–probe study of gas phase ethanol, Kling et al.5 observed H3O+ formation from dicationic ethanol. Based on molecular dynamics simulations they proposed a double hydrogen migration mechanism, with the second hydrogen migration causing the C–O bond cleavage and H3O+ release within a timescale of several hundred femtoseconds. Shirota et al.23 also presented a double hydrogen mechanism for the formation of H3O+ from the C2H5O+ ion (a metastable intermediate in the photodissociation reactions of alcohols and ethers) based on ab initio calculations. Similar results for ethanol and C2H5O+ were obtained with density functional theory calculations by Ma et al.,26 who observed H3O+ formation in ethanol after electron beam irradiation. Hydrogen migration was also observed in ionized molecules of biological relevance, such as amino acids,6,31,32 nucleosides,33 sugar molecules,34 and clusters of amino acids.35
Our previous study established a difference in the H3O+ formation between oABA and mABA. In this study, we confirm the isomer dependency of H3O+ production for all the ABA isomers by measuring the PEPICO spectra following carbon 1s ionization and subsequent fragmentation of dicationic oABA and pABA in the gas phase. Furthermore, to investigate the fragmentation dynamics of oABA in more detail we measure the energy-resolved Auger electron photoion coincidence (AEPICO) spectra. The highest possible Auger electron energy is reached when the energy difference between the initial and final states of the Auger process is maximal, that is when the final state is the dicationic ground state. When the final state is an excited state of the dication, the Auger electron energy is necessarily lower. Therefore, higher Auger electron energies imply lower energy final states for the Auger process and thus lower internal energies available for the fragmentation processes. The energy-resolved AEPICO spectrum thus shows us the internal energies required for specific fragmentation processes, based on the Auger electron energy at which the cation signals appear. Similar internal energy – Auger electron energy mapping has been utilised e.g. in a study of dissociation timescales of the diiodothiophene dication.36 We observe that the H3O+ signal appears in a narrow energy range right after the stable dication signal in the AEPICO map, i.e. the fragmentation process occurs with low internal energies of the dication and the corresponding Auger final state is some low-lying excited state of the dication. By modeling the excited states with ab initio quantum chemistry methods we can identify the final dicationic electronic states contributing to the H3O+ and other signals. We then explore the potential energy surface to identify multiple potential pathways of H3O+ formation, with activation energies that match the experiment. Ab initio molecular dynamics were also used to simulate the fragmentation processes.
The Scienta R4000 analyser is equipped with a fast position-sensitive detector (Quantar Inc., Model 3395A) to allow electron–ion coincidence measurements. The coincidence data was collected during two different experimental campaigns, and both times, the C 1s PEPICO spectrum of oABA was collected to confirm reproducibility. In coincidence measurements, performed also with 350 eV photon energy, the electron analyser was operated in a constant kinetic energy mode with a pass energy of 200 eV. When an electron within the kinetic energy range of interest arrived at the detector, an electric field was ramped up to extract positive ions present in the interaction region towards a modified Wiley–McLaren type multi-hit-capable ion time-of-flight (TOF) spectrometer, which is equipped with a position-sensitive delay line detector (HEX80, RoentDek Handels GmbH). Details regarding the TOF settings can be found in the ESI.† A pulse generator operating at approximately 60 Hz was also used to trigger the ion extraction field. Since these pulses are not correlated with electron triggers, they lead only to “false” ion collection. These can then be used to subtract the false coincidence ion background from the electron-triggered data.37,42 The amount of false coincidences was kept low by limiting the electron count rate to 10–20 counts s−1 by closing the exit slit of the monochromator to 25 μm. The data analysis was carried out using Igor Pro software (Wavemetrics, Inc. USA), augmented with curve fitting43,44 and coincidence data handling macro packages by E. Kukk.
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Fig. 1 A schematic of the processes and energy levels involved in this study with corresponding electron and ion spectra. (a) Energy level diagram (not to scale). The neutral ground state (GS) is set as the 0 of the energy scale. 350 eV photons initiate the process by photoionising the molecule from the C 1s levels. The binding energies (BEs) of chemically distinct carbon atoms are indicated next to the energy levels and taken from ref. 4. Core-ionised states decay via Auger decay to double-ionised (DI) states. The electronic transitions take place in the fs time scale, and thus the vertical double ionization potential (DIP) (calculated value) defines the onset of the experimental Auger electron spectrum. The state of the lowest DIP (calculated value) requires a significant restructuring of the molecule and is reached long after the Auger decay. (b) Molecular structure and the C 1s Auger electron spectrum of oABA. The asterisk marks two peaks which are discussed in the text. The kinetic energy regions I–III are depicted with blue, green, and red, respectively, to the right part of the graph. (c) TOF spectra in coincidence with all C 1s photoelectrons (labelled as total, black line) and three Auger regions: high kinetic energy region I (blue), medium kinetic energy region II (green), and low kinetic energy region III (red). Stable dications and H3O+ are indicated in the spectrum. The structural formula of oABA1 is shown. |
Fig. 2 compares the TOF mass spectra of all three isomers recorded in coincidence with C 1s photoelectrons (hν = 350 eV). The m/z ranges for the main detected ions are marked in Fig. 2, and the sharp peaks originating from doubly charged species with very low or no kinetic energy are indicated. The low m/z range contains CHi+ (i = 0,…,4), NHj+ (j = 0,…,4), and OHk+ (k = 0,…,3) fragments, followed by a broad region with ions for example C2Hn+, CNHn+, and COHn+ (n = 0,…,2, m/z ∼ 26–30). The m/z range covering 37–41 is a typical range for benzene ring fragments which can here also include an amino group. COOH+ has m/z of 45, and this signature is overlapped with two sharp peaks at ∼44.6 and ∼45.6, originating from doubly charged ions with masses of 89 and 91 amu, respectively. These doubly charged ions can be, for example, a parent ion which has lost a COOH-group and some additional hydrogens. The following m/z range 49–55 is again a typical range for benzene ring fragments, and the next doubly charged ion, especially strong for pABA, is at m/z = 54.5. This is interpreted as a parent ion which has lost 28 amu, which indicates the emission of a CO or CNH2 fragment. In oABA, there is a sharp peak at m/z = 59.6, which would be a doubly charged parent which has lost a neutral fragment with a mass of 18 amu, the plausible interpretation being emission of neutral H2O. Interestingly, in mABA and pABA a sharp peak is observed at m/z = 60, which would correspond to a fragment arising from the fragmentation of a doubly charged parent with a loss of 17 amu, i.e. neutral OH or NH3. After m/z = 60, there is a region of ring fragments up to a doubly charged parent ion signature at m/z = 68.6, especially visible for oABA and mABA, but very small in pABA. In all isomers, ring fragments around m/z = 74 are visible, as well as some signatures of [M–COOH]+ and additional H-loss ions at m/z = 90–92. Notice that in Fig. 2 the m/z peaks 16, 17, and 19 have flat tops in the TOF spectra recorded for oABA and mABA, while in pABA, the lower field setting resulted in the loss of some ions emitted perpendicular to the spectrometer axis, leading to double peak structures.
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Fig. 2 TOF spectra of all aminobenzoic acid isomers, measured in coincidence with C 1s photoelectrons. The data in the spectra of oABA and mABA are taken from ref. 4, and they have been measured with a higher extraction field in the TOF spectrometer, and thus the TOF axis differs compared to pABA. The m/z ratio is depicted as an indicative axis on the top. |
Fig. 3 shows the energy-resolved AEPICO coincidence map in the high energy region of the Auger electron, corresponding to KE region I in Fig. 1. The AEPICO map is constructed by presenting the Auger electron – ion events as a contour plot where the colour scale of the map refers to the number of coincidence events. The kinetic energy of the events Auger electron defines the position on the x-axis, while the TOF of the detected ion defines the placement with respect to the y-axis. The most important fragments discussed here are labelled in the projected TOF spectrum on the right-hand panel of the coincidence map. Some selected profiles are shown in the ESI† (see Fig. S1). The first, well-isolated intense signal from the right at 269.1 eV is due to the stable dication, and it matches the first peak labelled with an asterisk in Fig. 1(b). The H3O+ and [M–H3O]+ signals appear at 1.2 eV lower Auger kinetic energy than the stable dication, and these signals form the second peak marked with an asterisk in Fig. 1(b). They peak in a very narrow energy range, but H3O+ is produced in small amounts at lower Auger kinetic energies as well. Due to broadness of the lower field TOF peaks, there might also be a small contribution from the H2O+ fragment in the H3O+ signal. However, other channels such as [M–H2O]2+ and [C6H5N]2+ dominate the fragmentation dynamics below 267 eV Auger kinetic energies (higher internal energies).
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Fig. 3 Auger electron photoion coincidence map in the high Auger electron energy region (region I in Fig. 1). The color scale refers to the number of counts. The corresponding total Auger electron and TOF spectra are depicted in the top and right-hand panels respectively. |
Note that production of H3O+ in oABA is mainly observed in the high-kinetic-energy region of the Auger electron spectrum, which corresponds to a low internal excitation energy in the remaining dication. We have obtained deeper insight into the double ionization in this region, and the subsequent fragmentation mechanisms with quantum chemistry calculations. We focus on the rotamer 1 of oABA, which is expected to be the dominant configuration at the experimental temperature, based on the energy difference between the ortho-rotamers (∼120 meV).4 First, the high-kinetic-energy region of the Auger electron spectrum (see region I in Fig. 1(c) and 3) was investigated by excited states calculations of dicationic oABA using the geometry of the neutral molecule, computed at the MP2/cc-pVDZ level, i.e., assuming vertical ionization in the Franck–Condon region. The excited states were modelled using the equation of motion coupled cluster method with single and double excitations (EOM-CCSD).47,48 The results are presented in Table 1, and the energies are referred to the dicationic ground state. The vertical double ionization potential is the lowest possible energy final state in the Auger process assuming that nuclei do not have time to move in the core-ionised state (lifetime in order of a few fs), and thus corresponds to the highest possible Auger electron energy in the Auger electron spectrum. Lower Auger electron energies correspond to excited states as the Auger final states. We concentrate on the low-lying excited states as in that region the most interesting spectral features are observed, namely the peak at 269.1 eV due to stable dications and 267.9 eV where H3O+ production occurs. Using the results in Table 1 we may interpret the AEPICO map features in Fig. 3. A single Gaussian fit to the first signal from the right (i.e. the stable dication M2+ signal) in the AEPICO map depicted in Fig. 3 gives a full-width-at-half-maximum (FWHM) of 1.4 eV, which is considerably higher than the experimental broadening of 0.45 eV. This can be due to significant vibrational broadening, and/or two or more overlapping electronic states. A double Gaussian fit also gives a total FWHM of 1.4 eV and a peak separation of 0.65 eV, which matches well the computed first triplet excitation energy of 0.59 eV. We can conclude that both the dicationic ground state S0 and the first triplet state T1 can contribute to the M2+ signal. Fitting the H3O+ signal was much more challenging due to the low counts, but it is approximately as wide as the M2+ signal, and therefore likely composed of multiple electronic states as well. We propose that these are the T2, S1, S2 and T3 excited states which are grouped closely together in energy and whose average energy (1.56 eV) is 1.26 eV higher than the average energy of the S0 and T1 states, matching the experimental peak separation of 1.2 eV between the M2+ and H3O+ signals. The higher energy S3, S4 and T4 excited states then contribute to signals further to the left in the coincidence map, where multiple fragmentation channels such as the [M–H2O]2+ and C6H5N2+ channels start to overlap.
Singlet states | S1 | S2 | S3 | S4 |
---|---|---|---|---|
Energy (eV) | 1.45 | 1.51 | 2.51 | 3.92 |
Triplet states | T1 | T2 | T3 | T4 |
Energy (eV) | 0.59 | 1.39 | 1.88 | 2.33 |
The fragmentation mechanisms of dicationic ABA were investigated through an exploration of the potential energy surface (PES) as well as ab initio molecular dynamics simulations. Fig. 4 presents the results of the PES exploration. We assume a very efficient energy redistribution from the electronic excited states populated in the Auger process, towards nuclear degrees of freedom in electronic ground state (electron–phonon coupling). Thus, the PES exploration is carried out in the electronic ground state. The minimum Min 1 (highlighted in red) is reached by relaxation following vertical ionization. Hydrogen migration (through transition state TS 1, highlighted in green) followed by H2O roaming connect Min 1 to a more stable configuration in the minimum Min 2 (highlighted in blue). The reconfiguration to this more stable structure is a common step in the calculated pathways.
Fig. 4(a) shows a straightforward water roaming pathway starting from Min 2 with subsequent H3O+ release. The proton abstraction causes the initial benzene ring to be transformed into a five-membered ring with a cyclopentadiene configuration. The emission of neutral water is also depicted here and the energy required for the barrierless release of H2O lies 1.73 eV above the vertical double ionisation potential (VIP in Fig. 4). Apart from the water emission, the highest energy point in this pathway corresponds to the transition state TS 1, so H3O+ release becomes accessible with an internal energy of 1.05 eV. A more complicated series of hydrogen and water migrations is depicted in Fig. 4(b), but the endpoint is the same five-atom-ring structure as in Fig. 4(a). The highest energy point in this figure is 23.73 eV, so the pathway is accessible with a slightly higher internal energy of 1.96 eV, which is also higher than the H2O emission energy of 1.73 eV. Finally, Fig. 4(c) depicts water roaming pathways starting from Min 2 and the initial water-producing transition states towards the NH2 group, from which either proton may be abstracted by the roaming water to produce H3O+. The highest energy point here is again the first transition state TS 1, so the pathways given in this panel are also accessible with an internal energy of 1.05 eV, which is in rather good agreement with the experimental peak separation between the stable dication and H3O+ signals (see Fig. 3). A comparison of the microcanonical coefficient rates of the pathways in Fig. 4 indicates that proton abstraction from the –NH2 group is the most efficient process (see ESI† for more details). A partial charge analysis was also performed to investigate the flow of charge during the fragmentation pathways. The results can be found in the ESI.†
Among the aminobenzoic acid isomers, oABA (specifically the rotamer 1) is the most stable in terms of total energy in the ground state. It has been suggested that the reason for its greater stability is the intramolecular hydrogen bonding between the functional groups H–N–H⋯O–C–O–H.56 Based on our calculations, the relaxation from the VIP to the dicationic minimum Min 1 further strengthens this bond. Specifically, the N–O and H–O distances in the hydrogen bond are shortened by 0.17 Å and 0.37 Å, respectively, creating a sort of double-ring structure for the dicationic oABA1. To verify this, we have performed a bonding analysis in the Min 1 structure using the quantum theory of atoms in molecules, QTAIM,57,58 as implemented in the AIMAll program.59 The results of this analysis are presented in Fig. 5. Part of the positive charge is located in the amino group, which undergoes planarization. Electrons in one of the lone pair of the carboxylic oxygen are attracted with higher intensity towards the hydrogen atom in the amino group, thus giving rise to a strengthening of the hydrogen bond with respect to the neutral molecule, creating a double-ring structure. A similar effect has been observed in the ionization of γ-aminobutyric acid.6
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Fig. 5 QTAIM analysis of Min 1. Black lines are bond paths; green points are bond critical points and small red points are ring critical points. |
The key differences in fragmentation pathways between the ABA isomers can be seen in the TOF spectra in Fig. 2. The mABA and pABA spectra are missing the 59.5 m/z peak (i.e. [M–H2O]2+), but instead have notable peaks at 54.5 m/z, which can either be [M–CNH2]2+ or [M–CO]2+, both of which imply a breakup of one of the functional groups. For pABA specifically the 68.5 m/z peak (i.e. [M]2+) is very weak, indicating that the dication is very unstable. We propose that the double ring structure that is formed in dicationic oABA1 stabilises the functional groups, suppressing the competing fragmentation channels that are observed in the meta- and para-isomers, allowing for the migration and roaming processes that are necessary for H3O+ and H2O production.
The fragmentation processes were also simulated using molecular dynamics simulations. A small sample of trajectories were computed with internal energies of 2 or 5 eV and propagation times of 500–1000 fs. However, with these energies and propagation times, the simulations produced no fragmentation. Therefore the bulk of simulations were run using internal energies of 10, 20 and 30 eV. These higher internal energies were needed in the simulations to produce fragmenting trajectories within short propagation times, but this is problematic because in the Auger electron–photoion coincidences, we observe the H3O+ channel already at 1.2 eV. A propagation time of 250 fs was chosen for the computational feasibility of a large number of trajectories. For the 10, 20 and 30 eV simulations ∼90%, ∼60% and ∼20% of trajectories remained unfragmented, respectively. The full results of the molecular dynamics simulations can be found in the ESI.† We can thus conclude that 250 fs may be enough time to describe dynamics at higher energies but is insufficient closer to the potential energy surface. The Auger electron–photoion coincidence measurements also show that this is exactly the energy range where H3O+ fragments are produced. In the experimental setup, the flight time of ionized particles is on the order of microseconds, so a molecule will have orders of magnitude more time to reach the available fragmentation pathways. Thus, the low energy dynamics are far better described by the MP2 PES exploration rather than the molecular dynamics simulations. Some H2O and a handful of H3O+ producing trajectories were seen in the molecular dynamics, however without any notable isomer discrepancy. One such trajectory is depicted in Fig. 6, which closely resembles the pathway in Fig. 4(a), thus confirming the proposed mechanism.
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Fig. 6 Snapshots from a simulated 20 eV internal energy trajectory depicting H3O+ formation in oABA. The trajectory is similar to the pathway in Fig. 4(a). |
Footnote |
† Electronic supplementary information (ESI) available: Extended experimental details, molecular dynamics simulations, Auger profiles for selected fragments, partial charge analysis and microcanonical rate coefficients. See DOI: https://doi.org/10.1039/d5cp00415b |
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