Open Access Article
Danica B.
Trollip
*a,
Benita
Barton
*a,
Mino R.
Caira
*b and
Eric C.
Hosten
a
aDepartment of Chemistry, Nelson Mandela University, PO Box 77000, Gqeberha (Port Elizabeth), 6031, South Africa. E-mail: s217468225@mandela.ac.za; benita.barton@mandela.ac.za
bDepartment of Chemistry, University of Cape Town, Rondebosch 7701, South Africa. E-mail: mino.caira@uct.ac.za
First published on 4th November 2025
N,N′-Bis(9-(4-chlorophenyl)-9-thioxanthenyl)ethylenediamine (H1) and N,N′-bis(9-(4-chlorophenyl)-9-xanthenyl)ethylenediamine (H2) were investigated as possible separation agents for mixtures of pyridine (PYR) and methylpyridine isomers (2MP, 3MP, and 4MP) through supramolecular chemistry. MPs are present as mixtures in the chemical industry, but fractional distillation is challenging since they have a narrow boiling range, and so alternative and greener separation strategies are necessary. Initially, the host ability of H1 and H2 was assessed for these solvents; each pyridine was enclathrated by both host compounds. When guests competed, H1 and H2 behaved selectively: host affinities were in the order 3MP > PYR > 4MP ≫ 2MP (H1) and 2MP > 3MP > PYR ≫ 4MP (H2). Moreover, H1 was able to separate the 80
:
20, 60
:
40 and 50
:
50 PYR/2MP, 20
:
80 3MP/PYR and 60
:
40 PYR/4MP mixtures: high selectivity coefficients were calculated (K ≥ 10). H2 fared even better: each of the 20
:
80 2MP/PYR, 40
:
60 and 20
:
80 3MP/PYR, all mixtures of PYR/4MP except 20
:
80, all solutions of 2MP/4MP and 20
:
80 3MP/4MP mixtures may be purified in this fashion. Thermal experiments demonstrated that the favoured guest solvents formed the more stable complexes with H1 and H2. Furthermore, the SCXRD analyses provided reasons for the host affinity of H1 for 3MP, relative to the least preferred 2MP, when presented with guest mixtures. 3MP experienced three C–H⋯π close contacts with the host molecule, while this type of interaction was not observed in the 2MP-containing complex. Finally, 4MP was consistently disfavoured by H2 as a result of the fact that this guest solvent was accommodated in wide open multidirectional channels and, as a result, was the least stable complex, confirmed by thermal analysis, while the favoured 2MP formed the most stable complex of the four, being housed in unidirectional channels.
Since such synthetic procedures usually result in mixed pyridines, as indicated above, subsequent separations are required in order to isolate each one since they typically have their own dedicated applications in the chemical industry. A few examples follow. Unsubstituted pyridine serves as an excellent solvent in many processes since it dissolves in both water and many organic liquids and is also required for the synthesis of active pharmaceutical ingredients (APIs) and agrochemicals.6–8 2MP serves also as an intermediate towards APIs,5 and many of its reactions centre around the 2-methyl moiety. For instance, 2MP is required for the preparation of 2-vinylpyridine which is a necessary monomer when preparing textile tire cord. The same is true for 3MP, which is ultimately converted to pyridine-3-carbaldehyde, an intermediate towards antidotes for various poisons.9–12 The 4-methyl isomer, similarly, is a building block for the formation of many medicinal compounds, an example being isonicotinic acid which is required for the preparation of anti-tubercular APIs.
While PYR has a different boiling point (115.2 °C) compared with its methyl-substituted analogues and may thus be separated from these isomers by means of fractional distillation, the boiling points of the MPs are comparable (128–129, 144 and 145 °C for 2MP, 3MP and 4MP),13 rendering this separatory technique extremely energy intensive, costly, cumbersome and, ultimately, ineffective.14,15 Consequently, alternative separation methodologies are essential. To this end, the scientific literature abounds with reports proposing other more efficient methods for such separations. It has been reported that, for example, PYR and 3MP may be separated completely from one another by means of the macrocyclic host compound, cucurbit[6]uril.16 Other methods of separation include the employment of metal–organic frameworks (MOFs), calixarene derivatives, capillary zone electrophoresis and chromatography.17–20
Host–guest chemistry involving the encapsulation of guest species within the permanent voids of large macrocyclic host molecules or in the transient intrinsic cavities characterised by relatively small host molecules has received much attention in the last few years owing to its wide variety of useful applications. These include, but are not limited to, energy and chemical storage, chemosensing, water purification, stability and delivery of APIs, and racemate resolution.21–27
In the present investigation, we have considered two molecules, namely N,N′-bis(9-(4-chlorophenyl)-9-thioxanthenyl)ethylenediamine (H1) and N,N′-bis(9-(4-chlorophenyl)-9-xanthenyl)ethylenediamine (H2), for, firstly, their host ability for these pyridines (Scheme 1) and, secondly, their possible separation of mixtures of these guest solvents through host–guest chemistry as an alternative and greener methodology relative to fractional distillation. If host ability exists, these compounds may even be considered later for the purification of fouled water since these pyridine solvents are frequently found in wastewater.28–30 Any successfully prepared inclusion compounds here were subjected to SCXRD analyses to assess how the guest molecules were captured within the crystals of their complexes as well as thermoanalytical experiments as a means of establishing their relative thermal stabilities. We report on these findings now.
:
80.
:
guest (H
:
G) ratio was calculated by comparing the areas of suitable host and guest resonance signals.
:
G ratios and GC for quantification purposes of the guests in the mixed guest complexes.
:
80, 40
:
60, 60
:
40 and 80
:
20 (note that the 50
:
50 GA
:
GB results from the earlier binary equimolar experiments were also considered here). The treatment of the vials in which these experiments were conducted and the analysis of the ensuing solids were as in the equimolar experiments.![]() | (1) |
It was then possible to construct selectivity profiles in a visual manner to observe the host selectivity behaviour. This was achieved by plotting ZA (or ZB), the amount of GA (or GB) in the crystals, against XA (or XB), the amount of the same guest in the original solution. The K = 1 event is represented by means of the straight diagonal lines in these diagrams; any data points obtained experimentally that deviate from this line indicate that the host compound indeed exhibited selectivity for one of the two guest species present. It has been reported that a K value of 10 or greater implies that these separations are possible industrially,46 and so the K value for each experimentally obtained data point was calculated in this part of the investigation in order to determine which binary solutions may be separated in this manner.
:
G ratios (all applicable 1H-NMR spectra are deposited in the SI).
:
G ratios obtained after host crystallization experiments from the pyridyl solventsa
| Guest | H1 | H2 |
|---|---|---|
a The H : G ratios were determined by means of 1H-NMR spectroscopy.
|
||
| PYR | 1 : 1 |
1 : 2 |
| 2MP | 2 : 1 |
1 : 2 |
| 3MP | 1 : 1 |
1 : 2 |
| 4MP | 2 : 1 |
2 : 3 |
In this manner, inclusion complexes were formed in each instance; H1 included PYR, 2MP, 3MP and 4MP with H
:
G ratios of 1
:
1, 2
:
1, 1
:
1 and 2
:
1, respectively, while these ratios were 1
:
2, 1
:
2, 1
:
2 and 2
:
3 in the case of H2 (Table 1).
:
G ratios) on the solids that were isolated from each solution. Preferred guests are highlighted in bold text. These experiments were conducted in duplicate and so the percentage estimated standard deviations (% e.s.d.s) are provided in parentheses in this table (the GC traces may be found in the SI).
| Guests | Guest ratios (% e.s.d.s) | Overall H : G ratio |
|||||
|---|---|---|---|---|---|---|---|
| PYR | 2MP | 3MP | 4MP | H1 | H2 | H1 | H2 |
| X | X |
93.0 : 7.0 (1.0) |
26.1 : 73.9 (0.8) |
4 : 3 |
1 : 3 |
||
| X | X | 17.3 : 82.7 (2.0) |
38.3 : 61.7 (2.3) |
2 : 3 |
1 : 2 |
||
| X | X |
74.7 : 25.3 (2.3) |
96.2 : 4.8 (1.9) |
1 : 1 |
1 : 2 |
||
| X | X | 16.7 : 83.3 (2.5) |
69.7 : 30.3 (0.6) |
2 : 3 |
2 : 5 |
||
| X | X | 26.0 : 74.0 (0.7) |
91.9 : 8.1 (0.8) |
3 : 2 |
2 : 5 |
||
| X | X |
72.0 : 28.0 (4.4) |
75.1 : 24.9 (0.4) |
1 : 1 |
1 : 3 |
||
| X | X | X | 15.7 : 13.0 : 71.3 (0.9)(1.1)(0.3) |
19.8 : 60.6 : 19.6 (0.4)(1.7)(1.3) |
1 : 2 |
2 : 5 |
|
| X | X | X |
77.6 : 12.6 : 9.8 (0.3)(2.1)(1.8) |
27.3 : 67.9 : 4.8 (2.0)(0.7)(1.3) |
1 : 1 |
1 : 3 |
|
| X | X | X | 15.4 : 55.6 : 29.0 (1.3)(1.0)(2.3) |
26.9 : 60.1 : 13.0 (0.3)(0.8)(0.5) |
1 : 1 |
1 : 3 |
|
| X | X | X | 13.5 : 69.6 : 16.9 (2.4)(4.1)(1.8) |
56.9 : 33.2 : 9.9 (1.8)(1.4)(0.4) |
1 : 1 |
1 : 3 |
|
| X | X | X | X |
54.3 : 14.3 : 13.0 : 18.4 (1.9)(0.2)(0.2)(1.8) |
17.1 : 51.3 : 23.9 : 7.7 (1.8)(1.1)(0.7)(0.0) |
2 : 3 |
1 : 3 |
For host compound H1, when crystallized from the equimolar binary guest mixtures, a preference towards 3MP was consistently observed, and the crystals from these experiments contained as much as 72.0–83.3% 3MP (Table 2). In the absence of 3MP, PYR and then 4MP were favoured. An extraordinary result was observed in the PYR/2MP experiment, where as much as 93.0% PYR was measured in the crystals. In the ternary mixtures, 3MP remained the preferred guest solvent, and the greatest percentage of 3MP in these cases was noted in the PYR/2MP/3MP experiment (71.3%). In PYR/2MP/4MP, where 3MP was not present, the host selectivity was then for PYR once more (77.6%). Finally, and interestingly, the quaternary guest solvent experiment demonstrated that H1 now favoured, overwhelmingly, PYR (54.3%) rather than 3MP (13.0%), contrary to expectations given the results from the other equimolar experiments reported in this table.
In summary, the selectivity of H1 was generally in the order 3MP > PYR > 4MP ≫ 2MP, with 2MP consistently being disfavoured in these experiments.
Contrastingly, the host affinity of H2 was towards 2MP in the binary guest mixtures (Table 2), with a significant selectivity observed for this guest solvent in the 2MP/4MP experiment (91.9%). When 2MP was absent from the binary mixtures, then more of 3MP was selected (the PYR/3MP and 3MP/4MP experiments afforded complexes with 61.7 and 75.1% 3MP, respectively) followed by PYR. In fact, the PYR/4MP experiment produced crystals with the greatest amount of PYR, 96.2%. In the ternary experiments, 2MP remained favoured throughout, with selectivities ranging from 56.9% (2MP/3MP/4MP) to 67.9% (PYR/2MP/4MP). The absence of 2MP from the ternary solution then produced crystals with more of 3MP (PYR/3MP/4MP, 60.1%). Finally, the quaternary experiment predictably produced solids that contained a greater amount of 2MP (51.3%).
Overall, the affinity of H2 was in the order 2MP > 3MP > PYR ≫ 4MP, where 4MP remained disfavoured throughout.
The overall H
:
G ratios for all of these complexes varied widely (Table 2).
Thus, the host compounds with oxygen or sulfur in the B rings of the tricyclic fused systems behaved very differently in these mixtures.
:
20, 60
:
40, 40
:
60 and 20
:
80). The selectivity profiles (with the inserted 50
:
50 data points from the equimolar experiments, Table 2) are provided in Fig. 1 (H1) and 2 (H2). From a consideration of all of the data points in these plots were calculated the K values, which are summarized in Table 3 (where the percentage of the preferred guest in the original solution is provided in black bold text). The straight diagonal lines in these plots represent an unselective host compound (GC traces may be found in the SI).
![]() | ||
| Fig. 1 Selectivity profiles obtained from the a) PYR/2MP, b) 3MP/PYR, c) PYR/4MP, d) 3MP/2MP, e) 4MP/2MP and f) 3MP/4MP binary solution experiments with H1 as the host compound. | ||
![]() | ||
| Fig. 2 Selectivity profiles obtained from the a) 2MP/PYR, b) 3MP/PYR, c) PYR/4MP, d) 2MP/3MP, e) 2MP/4MP and f) 3MP/4MP binary solution experiments with H2 as the host compound. | ||
| H1 | H2 | ||||||
|---|---|---|---|---|---|---|---|
| PYR/2MP | 3MP/2MP | 2MP/PYR | 2MP/3MP | ||||
| a K values were calculated in favour of the preferred guest species in each experiment. | |||||||
80 : 20 |
∞ |
80 : 20 |
3.0 |
80 : 20 |
3.5 |
80 : 20 |
6.9 |
60 : 40 |
24.0 |
60 : 40 |
5.1 |
60 : 40 |
2.7 |
60 : 40 |
3.9 |
50 : 50 |
13.3 |
50 : 50 |
5.0 |
50 : 50 |
2.8 |
50 : 50 |
2.3 |
40 : 60 |
6.7 |
40 : 60 |
4.3 |
40 : 60 |
2.3 | 40 : 60 |
2.2a |
20 : 80 |
4.8 | 20 : 80 |
6.7a | 20 : 80 |
11.7 | 20 : 80 |
1.0a |
| 3MP/PYR | 4MP/2MP | 3MP/PYR | 2MP/4MP | ||||
80 : 20 |
2.8 |
80 : 20 |
2.6 |
80 : 20 |
3.4 |
80 : 20 |
22.5 |
60 : 40 |
3.9 |
60 : 40 |
2.0 |
60 : 40 |
4.3 |
60 : 40 |
9.6 |
50 : 50 |
4.9 |
50 : 50 |
2.8 |
50 : 50 |
1.6 |
50 : 50 |
11.3 |
40 : 60 |
2.9 |
40 : 60 |
1.7 | 40 : 60 |
41 |
40 : 60 |
15.4 |
20 : 80 |
15.4 | 20 : 80 |
3.8a | 20 : 80 |
∞ |
20 : 80 |
39.5 |
| PYR/4MP | 3MP/4MP | PYR/4MP | 3MP/4MP | ||||
80 : 20 |
8.7 |
80 : 20 |
6.7 |
80 : 20 |
10.6 |
80 : 20 |
1.5 |
60 : 40 |
13.2 |
60 : 40 |
1.8 |
60 : 40 |
20.2 |
60 : 40 |
2.4 |
50 : 50 |
2.9 |
50 : 50 |
2.6 |
50 : 50 |
19.6 |
50 : 50 |
3.0 |
40 : 60 |
3.4 |
40 : 60 |
2.7 |
40 : 60 |
27.9 |
40 : 60 |
4.2 |
20 : 80 |
1.5 | 20 : 80 |
2.4a | 20 : 80 |
7.1a |
20 : 80 |
10.0 |
In the PYR/2MP solutions (Fig. 1a), PYR was consistently favoured by H1, and the 80
:
20, 60
:
40 and 50
:
50 PYR/2MP experiments furnished significant K values, infinite, 24.0 and 13.3 (Table 3), alluding to feasible separations of these mixtures through supramolecular chemistry strategies (since K is required to be 10 or greater for efficient separations46). The host selectivity in the 40
:
60 and 20
:
80 PYR/2MP solutions was, however, more moderate (K ≤ 6.7). The remaining five selectivity plots (Fig. 1b–f) indicate that the affinity behaviour of the host compound depended on the amounts of the two guest solvents present where, in each instance, the 20
:
80 experiment resulted in a selectivity towards the guest in the greater (80%) amount. More specifically, the 20
:
80 3MP/PYR experiment (Fig. 1b) saw more of PYR being enclathrated, and K was significant, 15.4, indicating that separations are plausible. However, the K values of the remaining data points, in favour of 3MP, were too low to suggest that successful separations are possible (K ≤ 4.9). The most significant result in the PYR/4MP solutions (Fig. 1c) was the 60
:
40 experiment since K was calculated to be 13.2, while the 40
:
60, 50
:
50 and 80
:
20 PYR/4MP mixtures had K values that ranged between 2.9 and 8.7. Once more, in the 20
:
80 experiment, more of 4MP was selected, but K was only 1.5. The 3MP/2MP solutions (Fig. 1d) were in favour of 3MP when concentrations of this guest were 40% or more; K was, however, only 5.1 or less, while the 20
:
80 3MP/2MP experiment demonstrated a host affinity for 2MP (K = 6.7). Both Fig. 1e (4MP/2MP) and 1f (3MP/4MP), as was the case in Fig. 1d (3MP/2MP), afforded K values that were too low to allow for separations of these mixtures. From the former plot (Fig. 1e, 4MP/2MP), for those experiments favouring 4MP, K values ranged between 1.7 and 2.8, while the 20
:
80 solution produced a solid with more of 2MP, but K was only 3.8. The latter plot (Fig. 1f, 3MP/4MP) produced K values between 1.8 and 6.7 when the selectivity was in favour of 3MP, while in the case in which more of 4MP was included (20
:
80 3MP/4MP), K was only 2.4.
Host compound H2, in low concentrations of 2MP in 2MP/PYR solutions (Fig. 2a, 20
:
80), demonstrated a preference for PYR, and the K value was notable, 11.7. The other data points in this plot, experiments which then favoured 2MP, however, provided K values that ranged between only 2.3 and 3.5, too low to allow for effective separations. Fig. 2b (3MP/PYR) also shows the selectivity behaviour of the host compound to be guest concentration dependent: from the 80
:
20, 60
:
40 and 50
:
50 3MP/PYR solutions were calculated K values between 1.6 and 4.3 (in favour of 3MP); however, as the concentration of PYR increased (40
:
60 and 20
:
80 3MP/PYR), the selectivity (for PYR now) increased to overwhelming levels, and K was 41.0 and infinite in these two experiments, correspondingly. A consideration of the data provided in Fig. 2c (PYR/4MP) also demonstrated that at a low concentration of PYR (20
:
80 PYR/4MP), the host compound preferred 4MP (K = 7.1), while in the remaining solutions, K was prodigiously in favour of PYR, 10.6–27.9, and these solutions may be separated in this manner. The selectivity plot for the 2MP/3MP experiments (Fig. 2d) showed that the behaviour of H2 was dependent upon the amounts of the two guests present once more. The 40
:
60 and 20
:
80 solutions produced crystals with more of 3MP, but K was low (2.2 and 1.0). In the other three experiments, 2MP was favoured, but K remained low (2.3–6.9). Fig. 2e (2MP/4MP) shows a consistent preference for 2MP in all instances; furthermore, all K values approached 10 or were significantly greater than 10 (9.6–39.5) and these solutions may be separated or purified in this particular fashion. Finally, the 3MP/4MP experiments (Fig. 2f) also demonstrated that 3MP was always favoured by H2, but only in the 20
:
80 3MP/4MP mixture was the K value high enough to allow for separations (K = 10.0). These values for the other data points were low, 1.5–4.2.
![]() | ||
| Fig. 3 Overlaid TG, dTG and DSC curves for a) H1·PYR, b) 2(H1)·2MP, c) H1·3MP, d) 2(H1)·4MP, e) H2·2(PYR), f) H2·2(2MP), g) H2·2(3MP) and h) 2(H2)·3(4MP). | ||
| Complex | T on/°C | Experimental mass loss (%) | Predicted mass loss (%) |
|---|---|---|---|
| a T on is the onset temperature for the guest release process and serves as a measure of the thermal stability of the complex. | |||
| H1·PYR | 63.0 | 10.7 | 10.5 |
| 2(H1)·2MP | 65.5 | 6.3 | 6.5 |
| H1·3MP | 71.3 | 12.8 | 12.2 |
| 2(H1)·4MP | 69.9 | 8.4 | 6.5 |
| H2·2(PYR) | 72.1 | 18.5 | 19.8 |
| H2·2(2MP) | 88.8 | 23.4 | 22.5 |
| H2·2(3MP) | 78.2 | 21.5 | 22.5 |
| 2(H2)·3(4MP) | 68.3 | 17.6 | 17.9 |
The predicted and expected mass losses for each of the eight complexes concurred reasonably well (Table 4), confirming the H
:
G ratios of the complexes as provided by the 1H-NMR experiments (Table 1).
The preferred guest solvent of H1 in the mixed guest competition experiments, 3MP, formed the most stable complex with this host compound, with a Ton temperature of 71.3 °C, while the remaining three complexes were less stable (Ton 63.0–69.9 °C). This observation explains the affinity of H1 for 3MP. However, with PYR being preferred second to 3MP (3MP > PYR > 4MP ≫ 2MP), these thermal data do not provide an explanation for the entire selectivity order, since H1·PYR exhibited the lowest thermal stability of the four complexes (Ton 63.0 °C). As an explanation for this observation being perceived as a possible anomaly, it should be borne in mind that these thermal experiments were carried out on the single solvent complexes, whilst the host selectivity order was obtained from the guest competition experiments. Therefore, whilst it is often the case that the two sets of results concur with one another, it is not unexpected that this is not always the case, since the host compound is provided with very different conditions in the two experiments (in the guest competition and in the single solvent crystallization experiments).
Satisfyingly, a consideration of the Ton temperatures of the four pyridyl complexes of H2 explains unambiguously the selectivity behaviour of this host compound in the crystallization experiments from mixed guests: this affinity order, 2MP > 3MP > PYR ≫ 4MP, is in direct accordance with the relative thermal stabilities of the complexes, with Ton being 88.8 °C (2MP) > Ton 78.2 °C (3MP) > Ton 72.1 °C (PYR) > Ton 68.3 °C (4MP). Therefore, 2MP was preferentially selected by H2 since this guest solvent formed the complex with the greatest thermal stability of the four, while 4MP was not favoured since its complex with H2 was the least stable one.
. Note that the crystal selected for SCXRD analysis of the inclusion compound of H2 with 4MP had a 1
:
2 H
:
G ratio, which differed slightly (2
:
3) from that which was observed in both 1H-NMR and TG analyses.
| H1·PYR | 2(H1)·2MP | H1·3MP | 2(H1)·4MP | |
|---|---|---|---|---|
| Chemical formula | C40H30Cl2N2S2·C5H5N | 2(C40H30Cl2N2S2)·C6H7N | C40H30Cl2N2S2·C6H7N | 2(C40H30Cl2N2S2)·C6H7N |
| Formula weight | 752.78 | 1440.48 | 766.80 | 1440.48 |
| Crystal system | Monoclinic | Triclinic | Monoclinic | Monoclinic |
| Space group | P21/c |
P![]() |
P21/c | P21/n |
| μ (Mo-Kα)/mm−1 | 0.331 | 0.339 | 0.328 | 0.339 |
| a/Å | 11.031(2) | 11.2571(9) | 12.1499(16) | 27.4379(12) |
| b/Å | 11.772(2) | 23.2434(19) | 10.8322(16) | 11.5895(6) |
| c/Å | 28.132(6) | 29.357(3) | 28.141(4) | 44.419(2) |
| Alpha/° | 90 | 113.227(4) | 90 | 90 |
| Beta/° | 92.860(7) | 94.356(4) | 94.231(5) | 95.0705(14) |
| Gamma/° | 90 | 90.072(4) | 90 | 90 |
| V/Å3 | 3648.4(13) | 7034.3(11) | 3693.6(9) | 14 069.6(11) |
| Z | 4 | 4 | 4 | 8 |
| D(calc)/g cm−3 | 1.370 | 1.360 | 1.379 | 1.360 |
| F(000) | 1568 | 3000 | 1600 | 6000 |
| Temp./K | 100 | 200 | 100 | 200 |
| Restraints | 0 | 28 | 6 | 679 |
| N ref | 9098 | 28 832 |
9243 | 28 785 |
| N par | 477 | 1819 | 489 | 1803 |
| R | 0.0328 | 0.0725 | 0.0354 | 0.0644 |
| wR2 | 0.0829 | 0.1697 | 0.0859 | 0.1714 |
| S | 1.03 | 1.05 | 1.02 | 1.07 |
| θ min–max/° | 1.9, 28.4 | 1.9, 26.5 | 2.0, 28.4 | 1.8, 26.4 |
| Tot. data | 139 350 |
394 762 |
159 150 |
435 231 |
| Unique data | 9098 | 28 832 |
9243 | 28 785 |
| Observed data [I > 2.0 sigma(I)] | 8276 | 24 209 |
7923 | 23 148 |
| R int | 0.049 | 0.087 | 0.057 | 0.044 |
| Completeness | 0.995 | 0.999 | 0.999 | 0.999 |
| Min. resd. dens. (e Å−3) | −0.34 | −0.66 | −0.48 | −1.10 |
| Max. resd. dens. (e Å−3) | 0.40 | 0.53 | 0.50 | 0.72 |
| CCDC number | 2463136 | 2467552 | 2463135 | 2467553 |
| H2·2(PYR) | H2·2(2MP) | H2·2(3MP) | H2·2(4MP) | |
|---|---|---|---|---|
| Chemical formula | C40H30Cl2N2O2·2(C5H5N) | C40H30Cl2N2O2·2(C6H7N) | C40H30Cl2N2O2·2(C6H7N) | C40H30Cl2N2O2·2(C6H7N) |
| Formula weight | 799.76 | 827.81 | 827.81 | 827.81 |
| Crystal system | Monoclinic | Monoclinic | Monoclinic | Monoclinic |
| Space group | P21/c | P21/c | P21/c | P21/c |
| μ (Mo-Kα)/mm−1 | 0.208 | 0.208 | 0.209 | 0.206 |
| a/Å | 10.2394(4) | 10.1122(4) | 10.2840(4) | 14.8825(6) |
| b/Å | 25.2702(10) | 25.887(1) | 25.5527(9) | 11.6416(4) |
| c/Å | 7.8761(3) | 7.8505(3) | 7.8072(3) | 24.0763(8) |
| Alpha/° | 90 | 90 | 90 | 90 |
| Beta/° | 97.0302(14) | 96.923(2) | 97.384(1) | 98.279(1) |
| Gamma/° | 90 | 90 | 90 | 90 |
| V/Å3 | 2022.63(14) | 2040.09(14) | 2034.59(13) | 4127.9(3) |
| Z | 2 | 2 | 2 | 4 |
| D(calc)/g cm−3 | 1.313 | 1.348 | 1.351 | 1.332 |
| F(000) | 836 | 868 | 868 | 1736 |
| Temp./K | 200 | 100 | 100 | 100 |
| Restraints | 72 | 0 | 0 | 0 |
| N ref | 5022 | 5072 | 4508 | 10 302 |
| N par | 310 | 276 | 276 | 551 |
| R | 0.0527 | 0.0375 | 0.0372 | 0.0373 |
| wR2 | 0.0999 | 0.0850 | 0.0764 | 0.0926 |
| S | 1.15 | 1.04 | 1.04 | 1.04 |
| θ min–max/° | 2.2, 28.3 | 2.0, 28.3 | 2.0, 27.2 | 1.9, 28.4 |
| Tot. data | 59 158 |
57 795 |
55 689 |
195 964 |
| Unique data | 5022 | 5072 | 4508 | 10 302 |
| Observed data [I > 2.0 sigma(I)] | 3649 | 4247 | 3576 | 8413 |
| R int | 0.083 | 0.060 | 0.079 | 0.071 |
| Completeness | 0.998 | 0.998 | 0.999 | 0.998 |
| Min. resd. dens. (e Å−3) | −0.28 | −0.28 | −0.24 | −0.28 |
| Max. resd. dens. (e Å−3) | 0.27 | 0.29 | 0.24 | 0.37 |
| CCDC number | 2463337 | 2463137 | 2463139 | 2463141 |
The unit cell of the complex H1·PYR was composed of one non-centrosymmetric host molecule and a single guest species. The diamino linker of the host compound assumed a folded configuration with a N–C–C–N torsion angle of −72.0(1)°, that is, the NH moieties were oriented almost gauche with respect to one another when the carbons between them were overlaid; moreover, no structural disorder was evident. The unit cells of 2(H1)·2MP and 2(H1)·4MP, on the other hand, each had four host molecules. In the former instance, two host species had folded linkers (the torsion angles between the NH groups were nearly gauche and measured 70.5(6) and 70.8(6)°), while the remaining two host molecules had their linkers in an extended conformation (torsion angles approached an anti-periplanar configuration, 176.3(4) and 178.5(5)°). In 2(H1)·4MP, the linkers of three of the host molecules were folded (−72.2(3), −73.7(3) and 74.6(3)°), while one host molecule presented an extended linker (171.4(3)°). In the complex H1·3MP, the asymmetric unit consisted of one host molecule and one guest molecule, and the linker was in an extended conformation (179.6(1)°). The guest molecule was ordered, but a pair of disordered hydrogen atoms was located on one of the nitrogen atoms of the host molecule (when considering the difference Fourier map); the major hydrogen atom component had a refined occupancy of 0.53.
In the unit cell of H2·2(PYR), some disorder in the guest molecule was evident, while in H2·2(2MP), the host molecule was located on a centre of inversion and the guest species was situated in a general position, which was then repeated by the inversion centre, resulting in the 1
:
2 H
:
G stoichiometry. The asymmetric unit of clathrate H2·2(3MP) consisted of one half of a host molecule and one guest molecule; the host species was, once more, positioned on a centre of inversion and the guest in a general position. The chemical formula unit was thus one centrosymmetric host molecule and two inversion-related guest molecules. Finally, the unit cell in H2·2(4MP) had a host molecule with pseudo-centrosymmetry and two guest molecules that adopted pseudo-centrosymmetric positions around the host species.
The nature of the guest accommodation in the eight complexes was subsequently scrutinized after deleting the guest molecules from the packing calculations. In H1·PYR and H1·3MP, the guest molecules occupied constricted channels (Fig. 4a and c, respectively). In fact, in the former complex, these channels were extremely constricted and may even be regarded as discrete cavities with two guest molecules residing in each one. Initially, when noting their similar unit cell dimensions, it was thought that these two complexes shared a common host packing. However, by comparing their calculated PXRD patterns (Fig. 5a), this was clearly not the case which, in hindsight, was not surprising given the very different geometries of the linkers of the host molecules (folded vs. extended). The guest species in both 2(H1)·2MP and 2(H1)·4MP were located in discrete cavities (Fig. 4b and d). The host packing in complexes H2·2(PYR), H2·2(2MP) and H2·2(3MP) was, however, isostructural, as confirmed by their comparable unit cell dimensions (Table 6) and their stacked PXRD patterns (calculated after guest deletion) as provided in Fig. 5b. Their guests occupied infinite unidirectional channels, with Fig. 4e, for H2·2(PYR), being representative of the other two complexes as well. Finally, in H2·2(4MP), the guests were located in multidirectional channels (Fig. 4f). These latter observations explain the affinity behaviour of H2 for 2MP, while continually disfavouring 4MP: complexes with guests in multidirectional channels usually exhibit lower thermal stabilities compared with when the guests are in unidirectional channels, as was confirmed earlier by the thermal analysis results for these complexes of H2.
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| Fig. 5 Calculated PXRD patterns demonstrating that a) H1·PYR and H1·MP do not share a common host packing, while b) H2·2(PYR), H2·2(2MP) and H2·2(3MP) do. | ||
Of the four complexes of H1, only H1·PYR and 2(H1)·4MP experienced π⋯π interactions and these were observed between host molecules only. In the former case, one such interaction was identified, with a centroid⋯centroid (Cg⋯Cg) distance of 3.939(1) Å and a slippage of 1.926 Å (Fig. 6a). However, in the latter inclusion compound, four interactions of this type were observed, and their Cg⋯Cg distances ranged between 3.528(6) and 3.726(8) Å. In H2·2(PYR) and H2·2(2MP), furthermore, were also observed π⋯π short contacts, but these were between guest molecules only; their Cg⋯Cg distances were between 3.5179(8) and 3.829(8) Å (with slippages between 0.917 and 1.676 Å). An example is provided in Fig. 6b.
Table S1 (in the SI) summarizes the parameters for the multitude of C–H⋯π interactions identified in each of the four complexes of H1 and H2, with many more of these short contacts in the complexes of the former host compound compared with those in the latter. These were observed within host molecules, between them, between guest molecules and between host and guest species, and stabilized the packing of the molecules in the crystals of their complexes and, also, facilitated guest retention. In those complexes involving H1, the distances of these close contacts ranged between 2.59 and 2.99 (H⋯π), and 3.386(4) and 3.850(8) (C⋯π) Å, with angles between 111 and 172°. These interactions in the complexes with H2 were between 2.78 and 2.98 (H⋯π), and 3.456(2) and 3.856(2) (C⋯π) Å; applicable angles ranged between 115 and 173°. Interestingly, the preferred guest of H1, 3MP, experienced three of these interactions with the host molecule, while consistently disfavoured 2MP did not interact in this way with H1. H2, on the other hand, always interacted in this manner with each of the four guest solvents. Examples of these are provided in Fig. 7: Fig. 7a shows the intramolecular interaction of this type between the hydrogen atom of the CH2 moiety of the diamino linker (in H1·PYR) and one of the aromatic rings of the tricyclic fused system and Fig. 7b demonstrates this close contact between the free host aromatic group and the centroid of the guest species in H2·2(2MP).
The applicable parameters of the inter- and intramolecular hydrogen bonding interactions identified in the eight complexes of the present investigation, both classical and non-classical, are summarised in Table S2 (SI), where D is the donor atom and A is the acceptor atom. Classical intermolecular (host)N–H⋯N(guest) hydrogen bonding close contacts, facilitating guest retention, were identified in each of the H2·2(PYR), H2·2(2MP) and H2·2(3MP), with two of these in H2·2(PYR). These measured between 2.355(18) and 2.520(17) Å (H⋯N), with N⋯N distances ranging between 3.25(1) and 3.401(2) Å; the bond angles were 172(1)–176(2)°. Interestingly, these types of short contacts were not observed in any of the complexes with H1 nor in H2·2(4MP). However, in the 2(H1)·2MP inclusion compound, and only in this one, were noted (host)N–H⋯S(host) interactions, which were classical and intramolecular in nature, and assisted in stabilizing the geometry of the host molecule, thus reducing its flexibility; applicable parameters for H⋯N were 2.82(5) and 2.86(5) Å, and for N⋯S 3.422(5) and 3.447(5) Å, and the bond angles were 127(4) and 125(4)°, correspondingly. Non-classical intermolecular (guest)C–H⋯S(host) and (host)C–H⋯S(host), as well as three non-classical intramolecular (host)C–H⋯S(host), interactions were also identified. The intermolecular (guest)H⋯S(host) and (host)H⋯S(host) bond lengths were 2.86 Å and between 2.80 and 2.86 Å, (guest)C⋯S(host) and (host)C⋯S(host) 3.712(8) Å and between 3.723(4) and 3.773(3) Å, and the bond angles were 145° and between 159 and 165°, respectively. Those intramolecular in nature within host molecules measured 2.80–2.81 Å (H⋯S) and 3.548(2)–3.581(7) Å (C⋯S); 136–140° were the bond angles. A number of non-classical hydrogen bonds were also observed in these complexes, of the C–H⋯N type, both inter- and intramolecular, and were responsible for guest retention in the crystals, stabilization of the host packing motif and the host molecular geometry. These intramolecular host close contacts measured between 2.37 and 2.50 (H⋯N), and 2.748(9) and 2.846(3) (C⋯N) Å (100–104°). Those between host molecules and between host and guest species measured between 2.43 and 2.71 Å (H⋯N), and 3.285(5) and 3.514(9) (C⋯N) Å. The bond angles were 126–176°. Finally, two non-classical intermolecular (guest)C–H⋯O(host) and (host)C–H⋯O(host) interactions were identified in complexes H2·2(PYR), H2·2(3MP) and H2·2(4MP), where the H⋯O distances were 2.49 Å and between 2.51 and 2.69 Å, correspondingly; C⋯O measured 3.37(1) Å and between 3.253(2) and 3.318(2) Å, and bond angles were 154° and between 127 and 137°. In Fig. 8a is illustrated the host diamino linker NH group interacting with the sulfur atom of the tricyclic fused system, while Fig. 8b depicts the NH group in close contact with the nitrogen of the guest species. Non-classical intermolecular interactions, specifically C–H⋯S (H1·PYR), C–H⋯O (H2·2(PYR)) and C–H⋯N (H2·2(3MP)), are illustrated in Fig. 9. In Fig. 9a, a hydrogen of the aromatic ring of the tricyclic fused system interacts with another sulfur atom of the tricyclic fused system of another host molecule. Fig. 9b is a depiction of a hydrogen atom of the guest molecule interacting with the oxygen atom of the tricyclic fused system, and Fig. 9c shows a hydrogen on the aromatic ring of the tricyclic fused system interacting with the nitrogen of a guest molecule. The intramolecular (host)C–H⋯N(host) (left) and (host)C–H⋯S(host) (right) close contacts are provided in Fig. 10, where in both cases the hydrogen atom of the free aromatic ring interacts with the nitrogen atom of the diamino linker (Fig. 10a) and the sulfur atom of the tricyclic fused system (Fig. 10b).
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| Fig. 8 The classical a) N–H⋯S and b) N–H⋯N hydrogen bonding interactions present in complexes 2(H1)·2MP and H2·2(2MP), respectively. | ||
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| Fig. 9 Non-classical intermolecular hydrogen bonding in complexes a) H1·PYR, b) H2·2(PYR) and c) H2·2(3MP). | ||
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| Fig. 10 Non-classical intramolecular hydrogen bonding, a) (host)C–H⋯N(host) and b) (host)C–H⋯S(host). | ||
Other short contacts, which occurred in all four H1 complexes and the H2·2(4MP) inclusion compound, with distances less than the sum of the van der Waals radii (<) of the involved atoms or this sum minus 0.2 Å (≪), are provided in Table S3 of the SI. These interactions were largely of the (host)C–H⋯C–C(host), (guest)C–H⋯C–C(host), (host)C–H⋯C–Cl(host), (guest)C–H⋯C–Cl(host), (host)C–H⋯C–S(host) and (host)C–H⋯C–C(guest) types. The H⋯C distances measured between 2.49 and 2.94 Å (114–169°). An example of the (host)C–H⋯C–C(host) interaction is provided in Fig. 11a (H1·PYR), (host)C–H⋯C–Cl(host) in Fig. 11b (2(H1)·2MP), and (guest)C–H⋯C–Cl(host) in Fig. 11c (H1·3MP). The distances of the applicable interactions were 2.89, 2.80 and 2.80 Å, with bond angles of 134, 131 and 140°.
In summary, it was challenging singling out the short contacts responsible for the affinity behaviour of H1 and H2 in guest mixtures owing to the extremely large number and variety of noncovalent interactions present in these complexes (Tables S1–S3 in the SI). Only the PYR-, 2MP- and 3MP-containing complexes of the latter host species experienced classical hydrogen bonds between the host and guest molecules, which were absent in all of the complexes with H1 and also in H2·2(4MP). However, the disfavoured guest of H1, 2MP, did not interact with the host species through C–H⋯π contacts, while its preferred guest solvent, 3MP, experienced three such close contacts, one (host)C–H⋯π(guest) (2.76, 3.582(2) Å and 145°) and two (guest)C–H⋯π(host) (2.75 and 2.83 Å, 3.711(2) and 3.738(2) Å, and 168 and 154°) in nature. This observation plausibly explains the affinity of H1 for 3MP and its consistently low selectivity for 2MP. Furthermore, H2 accommodated preferred 2MP in unidirectional channels, while 4MP, which was always disfavoured, was housed in multidirectional channels. This may explain the selectivity behaviour of this host species: multidirectional channel occupation is associated with lower complex stabilities when compared with unidirectional channel housing, and this is supported by the results from thermal analysis, where the 4MP-containing complex was observed to be the least stable of the four inclusion compounds.
:
G ratios varied. The equimolar guest competition experiments demonstrated that the selectivities of these host compounds for these guest solvents were in the order 3MP > PYR > 4MP ≫ 2MP and 2MP > 3MP > PYR ≫ 4MP, respectively. The binary guest competition experiments revealed that, in the case of H1, the 80
:
20, 60
:
40 and 50
:
50 PYR/2MP (K = ∞/24.0/13.3, in favour of PYR), 20
:
80 3MP/PYR (K = 15.4, favouring PYR) and 60
:
40 PYR/4MP (K = 13.2 for PYR) may all be effectively separated by means of supramolecular chemistry strategies. H2 behaved even more selectively, and each of the 20
:
80 2MP/PYR (K = 11.7, preferring PYR), 40
:
60 and 20
:
80 3MP/PYR (K = 41/∞, PYR), all mixtures of PYR/4MP but the 20
:
80 combination (K = 10.6/20.2/19.6/27.9, in favour of PYR), all combinations of 2MP/4MP (K = 22.5/9.6/11.3/15.4/39.5, for 2MP) and, finally, 20
:
80 3MP/4MP (K = 10.0, preferring 3MP) mixtures may be purified in this fashion. Thermal analyses showed that the complex with the favoured guest of H1, 3MP, was the most stable one with the highest Ton (71.3 °C), explaining the affinity of this host species for 3MP. These analyses also clarified why 2MP was preferred by H2; this complex also had the highest Ton (88.8 °C), while the least favoured guest solvent, 4MP, formed an inclusion compound with the lowest Ton (68.3 °C). In all eight complexes, through SCXRD analyses, were observed a myriad of short noncovalent interactions which served to stabilise these inclusion compounds. This analytical technique provided reasons for the host affinity behaviour when crystallized from guest mixtures. In the complex of H1 with preferred 3MP were identified three C–H⋯π close contacts between host and guest species, while disfavoured 2MP did not interact with the host molecule in this manner. Furthermore, H2 exhibited an enhanced selectivity for 2MP as a result of the higher thermal stability of this complex due to its guest accommodation in unidirectional channels, compared with 4MP, never being preferentially selected by H2, which was housed in wide open multidirectional channels and, as a consequence, exhibited the lowest thermal stability of the four.
Supplementary information: the supporting information (SI) section contains the applicable 1H-NMR spectra, GC traces and comprehensive data tables populated with the noncovalent interactions in these eight complexes. See DOI: https://doi.org/10.1039/d5ce00969c.
CCDC 2463135–2463137, 2463139, 2463141, 2463337, 2467552 and 2467553 contain the supplementary crystallographic data for this paper.48a–h
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