Open Access Article
Nizami
Israfilov
a,
Nathalie
Kyritsakas
b,
Abdelaziz
Jouaiti
*a and
Sylvie
Ferlay
*a
aUniversité de Strasbourg, CNRS, CMC UMR 7140, F-67000 Strasbourg, France. E-mail: jouaiti@unistra.fr; ferlay@unistra.fr
bService de radiocristallographie de la Fédération de Chimie Le Bel – UAR 2042, Université de Strasbourg and, CNRS, F-67000 Strasbourg, France
First published on 29th January 2025
Two new coordination polymers (compounds 1 and 2) based on the use of a V-shaped ligand L (9,9-bis(4-carboxyphenyl)fluorene) combined with Cu(NO3)2 or Zn(NO3)2 were synthesized and structurally characterized by single-crystal X-ray diffraction. These compounds add to the list of very few examples of reported CPs derived from ligands with a fluorene core. X-ray diffraction analysis revealed the structures of the compounds; 2D (1) and robust 3D (2) structures were reported, and their sorption and emission properties were analysed. Additionally, it was possible to isolate the following compounds as side products: compound 4, a 2D compound that is isomorphous to 1, and compound 3, a polymorph of 1.
Coordination polymers (CPs)8,9 are extended molecular assemblies built from metallic nodes and ligands and studied for their multiple properties and applications. The formation of metal-based functional materials involving fluorene derivatives has also been well documented.10 Starting from fluorene derivatives bearing carboxylic groups, there have been few luminescent CPs that have been described: one can cite their use for the recognition of Fe(III) ions,11 sensing of picric acid12 or the mechanoluminescence behaviour13 as an emitter.14 Fluorene moieties have also been appended with pyridyl derivatives for the formation of CPs, with their use as an anion sensor being thoroughly described.15
We are interested in the generation of porous coordination polymers (CPs) or MOFs (molecular organic frameworks),16,17 which are molecular extended architectures presenting different functionalities depending on their structures, with applications in fields such as catalysis, gas storage, luminescence, and sensing.17,18 The development of crystal engineering strategies19 has enabled the possibility to obtain and elucidate a multitude of crystalline structures. To achieve a certain degree of predictability in the obtained molecular structures, the ligands used must be structurally rigid.
We intend to provide a crystal engineering approach to illustrate the formation of new fluorene-based compounds, together with their sorption properties, which have not been commonly reported for such compounds. For this purpose, we intend to use a “short” V-shaped ditopic ligand, bearing carboxylate coordinating moieties. The design of H2L (9,9-bis(4-carboxyphenyl)fluorene) (Fig. 1) appears appropriate for this purpose. H2L has been known for the formation of fluorene-based polymers;20 however, it has never been reported for the formation of CPs. Due to the V shape of this ditopic ligand, the predictability of the formed coordination polymers appears much more accessible. We aim to investigate the influence of the flexibility of H2L and the nature of the used metallic salts, on the nature of the formed CPs.
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| Fig. 1 Fluorene-based ligand H2L used for the formation of CPs and flexibility on the tetrahedral central C atom. | ||
In this contribution, we report the structure of the obtained coordination polymers when H2L is combined with Cu(NO3)2 or Zn(NO3)2 salts in solvothermal conditions. We focused on the use of divalent metal ions presenting different coordination abilities, favouring the formation of metallic clusters, like the well-known paddle-wheel-shaped dimeric units. The structural investigations together with the properties (gas sorption and emission) of the corresponding CPs are described here below.
Compounds 1 and 2, which could be obtained in a reproducible way, with a high degree of purity and in high yields, are described here below, and their properties were studied.
For both the described compounds, the bond length values found in L are in accordance with previously reported analogue ligands bearing the fluorene moiety10 and are not discussed here.
| CCDC | 2383979 | 2395186 |
|---|---|---|
| 1 | 2 | |
| Empirical formula | C30H23CuNO5, solvent | 2(C81H50O13Zn3.50), 6(C3H7NO), solvent |
| Formula weight | 541.03 | 3354.71 |
| Temperature | 120(2) | |
| Wavelength | 0.71073 Å | |
| Crystal system, space group | Orthorhombic, Cmca | Trigonal, R![]() |
| Unit 2D Cocell dimensions | a = 23.4998(8) Å, α = 90 deg. | a = 25.5168(6) Å, α = 90 deg. |
| b = 18.6597(6) Å, β = 90 deg. | b = 25.5168(6) Å, β = 90 deg. | |
| c = 17.5655(6) Å, γ = 90 deg. | c = 20.8378(7) Å, γ = 120 deg. | |
| Volume | 7702.5(4) Å3 | 11749.9(7) Å3 |
| Z, calculated density | 8, 0.933 Mg m−3 | 3, 1.422 Mg m−3 |
| Absorption coefficient | 0.594 mm−1 | 1.132 mm−1 |
| F(000) | 2232 | 5178 |
| Crystal size | 0.150 × 0.120 × 0.100 mm | 0.140 × 0.130 × 0.120 mm |
| Theta range for data collection | 2.472 to 27.898 deg. | 2.161 to 27.887 deg. |
| Limiting indices | −30 ≤ h ≤ 26 | −33 ≤ h ≤ 33 |
| −24 ≤ k ≤ 23 | −33 ≤ k ≤ 33 | |
| −23 ≤ l ≤ 23 | −27 ≤ l ≤ 26 | |
| Reflections collected/unique | 44 079/4717 [R(int) = 0.0763] |
38 206/6242 [R(int) = 0.0609] |
| Goodness-of-fit on F2 | 1.046 | 1.019 |
| Final R indices [I > 2sigma(I)] | R 1 = 0.0464, wR2 = 0.1285 | R 1 = 0.0544, wR2 = 0.1401 |
| R indices (all data) | R 1 = 0.0631, wR2 = 0.1400 | R 1 = 0.0767, wR2 = 0.1588 |
| Largest diff. peak and hole | 0.656 and −0.633 e Å3 | 0.862 and −0.741 e Å3 |
1 results from the bridging of the V-shaped ligand L2− by the paddle-wheel unit formed by the Cu2+ cations, acting as a square, thus the recognition pattern is a corrugated 2D grid formed in the xOz plane, and presents an M/L ratio of 1/1. The grids are made up of lozenges with side lengths of 14.652(2) Å and angles of 106.4° and 73.6° (see Fig. 2a and b). The metal centre displays a distorted pyramid square base coordination geometry (see bonds and angles in Table 2 and Fig. 2c), as frequently found in paddle-wheel derivatives, with a short Cu⋯Cu distance of 2.6302(7) Å. It is interesting to note, that paddle-wheel units have been frequently encountered in the formation of robust MOFs.22 The four equatorial positions of the metal centre are occupied by four oxygen atoms (coming from four different ligands) thus forming the basal plane of the metal, and the apical position is occupied by an oxygen atom of a disordered DMF molecule, as shown in Fig. 2c. As shown in Table 2, the Cu–O bond lengths are equal to 1.9619(15) and 1.9684(16) Å, whereas the apical Cu–ODMF distance is equal to 2.142(3).
| 1 | 2 | |
|---|---|---|
| M–O | 1.9619(15) | 1.935(2) |
| 1.937(2) | ||
| 1.9684(16) | 1.9472(11) | |
| 2.019(2) | ||
| M–ODMF | 2.142(3) | — |
| M–M | 2.6302(7) | 2.707(6) |
| 2.838(15) | ||
| 2.998(4) | ||
| 3.000(14) |
In the CP, the α angle within the L2− ligand (Fig. 1) is equal to 102.19°.
In the crystal, the corrugated planes are stacked along the b axis (Fig. 2a and S1 in the ESI†), and the distance between the two layers is equal to ca. 9.3 Å. There is a CH–π contact between the coordinated DMF molecule and a phenyl ring of the L2− ligand in the crystal.
As already mentioned, in slightly different synthetic conditions (lowering the synthetic temperature from 85 °C to 80 °C, see the Experimental section), the presence of one polymorph 3 of formula (C27H16O4)Cu(OH2)·nS, presenting also a 2D structure with the same connectivity but a different stacking (interpenetrated 2D networks) was observed (see crystallographic Tables S1 and S2 and Fig. S3 in the ESI†). In addition, using slightly different conditions and Zn(NO3)2, it is also possible to observe a Zn isomorph of 1, compound 4 with the formula (C27H16O4)Zn(OH2)·nS (see crystallographic Tables S1 and S2 and Fig. S2 in the ESI†), where the molecule coordinated in the apical position of the metal is water (for 4) instead of DMF (for 1), and presenting the same packing.
space group (see the crystallographic data in Table 1) and its asymmetric unit is composed of one ligand L2−, two disordered Zn2+ cations on special positions, one OH− (or O2−) anion and one DMF molecule (see Fig. S1 in the ESI†). It was not possible to precisely assign the nature of the anions within the Zn tetrahedron (OH− or O2−). The SQUEEZE instruction in PLATON21 was applied (which defined 300 electrons per cell). The residual electron density was assigned and can be estimated to be 30 molecules of the water solvent per cell, or water molecules and cations (probably derived from ammonium), located into the pores.
2 results from the bridging of V-shaped ligand L2− (see schematic representation Fig. 3a) by a Zn cluster composed of two fused Zn-tetrahedra, as shown in Fig. 3b, and inside of each tetrahedra can be found an anion (OH− or O2−), leading to the formation of [Zn7(μ4-OH)2]12+ (or [Zn7(μ4-O)2]10+) clusters (Secondary Building Units). The clusters are surrounded by 12 bridging ligands, coordinated through Zn–O bonds, and this results in a 3D coordination polymer, as schematically shown in Fig. 3c and d. The network adopts a typical 3D hexagonal structure. Other representations of this compound can be found in Fig. S4, in the ESI.†
In the network, the Zn2+ cations display distorted tetrahedral O4 geometry (see bonds and angle in Table 2, and Fig. 2c), and the Zn atom fusing two tetrahedra adopts a deformed octahedral O6 geometry, with O atoms provided by the carboxylate moieties of L2− and from the OH− (or O2−) anions located inside the cavity of the tetrahedra, with Zn–O distances varying between 1.935(2) and 2.019(2) Å, as seen in Table 2. Short Zn⋯Zn distances, varying between 2.707(6) and 3.000(14) Å, are observed within the [Zn7(μ4-OH)2]12+ (or [Zn7(μ4-O)2]10+) clusters, as seen in Table 2.
In the CP, the α angle within the L2− ligand (Fig. 1) is equal to 101.29°.
The presence of [Zn7(μ4-O)2]10+ clusters in coordination compounds, analogous to what is reported for 2, and has been already reported in the literature: MOFs obtained from NBD (2-nitrobenzene-1,4-dicarboxylate) ligand,23,24 pyrazolate-dicarboxylate MOFs25 or -(4-carboxyphenyl)succinamate based MOFs.26 The presence of [Zn7(μ4-OH)n]m+ units has been scarcely reported in the literature.27
The behaviour of the corresponding microcrystalline powders of both compounds has been investigated, and XRPD measurements were performed (Fig. 4). The air-dried powdered 1 and 2 samples present the same crystalline phases, as derived from the simulated XRDs on the related single crystals.
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| Fig. 4 For 1 (a) and 2 (b), PXRD diagrams of the air-dried microcrystalline compounds and after BET measurements, compared with the simulated phases obtained from X-ray diffraction data. | ||
These measurements evidence that the compounds are crystalline, maintain their structures after being exposed to the air and that there is only one crystalline phase in the microcrystalline powder of 1 and 2.
1 and 2 exhibit a two-step degradation profile. For 2, the first step, with an insignificant ∼3% weight loss up to 140 °C, is likely due to moisture and/or weakly bound DMF molecules. The second step involved a ∼20% weight loss up to 275 °C, corresponding to DMF molecules strongly trapped in the structure. Additionally, 2 shows a very high thermal stability, with degradation beginning around 420 °C.
For 1, despite several attempts, we were unable to obtain a well-defined degradation profile. The first step occurs up to 60 °C, followed by a second step between 60 °C and 230 °C, with the latter corresponding to a significant ∼40% weight loss. Degradation of 1 begins around 300 °C, which is lower than that observed for 2.
CO2(g) adsorption was also performed (Fig. S6 in ESI†). 2 exhibits an adsorption capacity of 1.53 mmol g−1, with a single-point surface area of 168 m2 g−1. 1 demonstrates an even higher adsorption capacity of 2.85 mmol g−1 at 273 K and 1200 mbar, with a corresponding surface area of 310 m2 g−1.
After the adsorption measurements, a PXRD diagram of the microcrystalline compounds was recorded (Fig. 4). An amorphization process was observed for both compounds, Nevertheless, 1 and 2 reveal to maintain crystalline phases, with broadening of the observed peaks.
Compound 1 did not present any emission properties.
It is interesting to note that in all the structures involving H2L, the deformation around the tetrahedral central C atom (α angle) is not pronounced, and it acts, as expected, as a rigid V-shaped ligand.
In all the compounds, there is a large amount of solvent present inside the cavities, which is released when the crystals are exposed to the air, therefore, the elemental analysis data is not reproducible and are not shown here.
Using the same conditions, but a temperature of 80 °C, it was possible to observe a few crystals of another crystalline phase. The crystals were isolated and revealed to be 3 (crystallographic Tables S1 and S2 and Fig. S3 in the ESI†).
For IR, see Fig. S10 in the ESI.†
Using the same conditions, but a temperature of 90 °C, it was possible to observe very few crystals of another crystalline phase. The crystals were isolated and revealed to be 4 (crystallographic Tables S1 and S2 and Fig. S2 in the ESI†).
X-ray analyses and structural resolutions for 1, 2 and 4 were performed at the Service de radiocristallographie, Fédération de Chimie “Le Bel”, UAR 2042, Strasbourg.
X-ray diffraction data collection was carried out on a Bruker PHOTON III DUO CPAD diffractometer equipped with an Oxford Cryosystem liquid N2 device, using Mo-Kα radiation (λ = 0.71073 Å). The crystal-detector distance was 40 mm. The cell parameters were determined (APEX3 software)28 from reflections taken from one set of 180 frames at 1 s exposure. The structure was solved using the program SHELXT-2018.29 The refinement and all further calculations were carried out using SHELXL-2018.30 The H atoms were included in the calculated positions and treated as riding atoms using SHELXL default parameters. The non-H atoms were refined anisotropically, using weighted full-matrix least-squares on F2. A semi-empirical absorption correction was applied using SADABS in APEX328; transmission factors: Tmin/Tmax = 0.6592/0.7456, for 1, Tmin/Tmax = 0.6942/0.7456 for 2 and Tmin/Tmax = 0.5694/0.7456 for 4.
For 3, X-ray diffraction data collection was carried out on a Bruker APEX II Kappa-CCD diffractometer equipped with an Oxford Cryosystem liquid N2 device, using Mo-Kα radiation (λ = 0.71073 Å). The crystal-detector distance was 40 mm. The cell parameters were determined (APEX2 software)28 from reflections taken from three sets of 6 frames, each at 10 s exposure. The structure was solved using the program SHELXT-2018.29 The refinement and all further calculations were carried out using SHELXL-2019.30 The H atoms were included in the calculated positions and treated as riding atoms using SHELXL default parameters. The non-H atoms were refined anisotropically, using weighted full-matrix least-squares on F2. A semi-empirical absorption correction was applied using SADABS in APEX2.28
All measurements were performed with ultrahigh-purity gases. The specific surface areas were determined using the Brunauer–Emmett–Teller and Langmuir equations from the low-pressure sorption data on Micromeritics ASAP 2020: N2 at 77 K, and CO2 at 273 K.
This is a rare example of ordered molecular compounds, obtained from fluorene-based ligands. Furthermore, fluorene-based ligands are still under investigation together with their properties.
Footnote |
| † Electronic supplementary information (ESI) available: Asymmetric units for 1 and 2, stacking in 1 and other representations for 2. For 3 and 4, crystallographic table, bonds table and representations of the compounds. For 1 and 2, TGA traces and N2 and CO2 adsorption isotherms, IR spectra in the solid state, together with XRPD diagrams after sorption measurements. For 2, solid-state reflectance spectra at RT. CCDC 2379878, 2379879, 2383979 and 2395186. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d4ce01201a |
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