Open Access Article
This Open Access Article is licensed under a Creative Commons Attribution-Non Commercial 3.0 Unported Licence

A deoxyfluoroalkylation–aromatization strategy to access fluoroalkyl arenes

Pankaj Bhattarai a, Suvajit Koley a, Krttika Goel b and Ryan A. Altman *ac
aBorch Department of Medicinal Chemistry, Purdue University, West Lafayette, IN 47906, USA. E-mail: raaltman@purdue.edu
bDavidson School of Engineering, Purdue University, West Lafayette, IN 47906, USA
cJames Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, IN 47906, USA

Received 2nd December 2024 , Accepted 27th December 2024

First published on 6th January 2025


Abstract

Fluoroalkyl arenes (Ar–RF) are valuable substructures present in several FDA-approved drugs, patents, agrochemicals, and materials, and complementary strategies that enable access to a broad spectrum of Ar–RF compounds benefit these applied fields. Herein, we report a deoxyfluoroalkylation–aromatization strategy to convert cyclohexanones into broad-spectrum Ar–RF containing compounds. Generally, the fluoroalkyl sources were activated to participate in a 1,2-addition reaction followed by aromatization in a sequence that contrasts more common preparations of these Ar–RF compounds, such as (i) transition-metal catalyzed cross-coupling reactions of aryl electrophiles and nucleophiles, and (ii) radical fluoroalkylation reactions of C–H bonds of arenes. Considering the range of cyclohexanone-derived substrates that could be prepared and used, this strategy can be creatively employed to deliver a broad spectrum of highly substituted fluoroalkyl arenes.


Fluoroalkyl arenes (Ar–RF) are valuable for pharmaceutical, agrochemical, and material sectors as evidenced by their high prevalence in FDA-approved drugs, agrochemicals, materials, patents, and the literature.1–3 In these realms, the Ar–RF substructures can impart favorable physicochemical perturbations, such as thermal, chemical, and metabolic stability, lipophilicity, and basicity.4–8 Common methods to access Ar–RF compounds involve (i) transition-metal catalyzed cross-coupling reactions of aryl electrophiles and nucleophiles,9–18 or (ii) radical perfluoroalkylation of C–H-containing arenes (Fig. 1A).19–23 However, transition-metal catalyzed cross-coupling reactions require programmed substrates, limiting their utilities to access highly substituted derivatives, and radical perfluoroalkylation reactions have intrinsic issues with regioselectivity. To complement these strategies, a conceptually distinct deoxyfunctionalization/aromatization strategy can exploit non-aromatic cyclohexan(en)ones as substrates,24,25 but has only recently been extended to deoxytrifluoromethylation reactions that convert cyclohexanone precursors to trifluoromethyl arenes (Ar–CF3, Fig. 1B).26 This strategy exploits cyclohexanone substrates that can be accessed in commercial libraries, prepared in annulation reactions, or accessed through the sequential decoration of cyclohexanone precursors. Subjection of the cyclohexanone substrate to a 1,2-addition reaction with a fluoroalkyl nucleophile and subsequent dehydration–aromatization delivers Ar–RF compounds in a convenient 2–3 step sequence (Fig. 1C). This proof-of-concept study could be strategically adapted with readily available or pre-functionalized cyclohexanones to deliver previously unreported highly-substituted and valuable Ar–RF products.
image file: d4cc06267a-f1.tif
Fig. 1 Methods to access fluoroalkyl arenes. (A) Common methods to access these substructures are cross coupling and radical fluoroalkylation, which are limited due to the availability of substrate and regioselectivity issues. (B) Previous work demonstrated a complementary deoxytrifluoromethylation/aromatization of cyclohexan(en)ones to access highly substituted Ar–CF3 compounds.26 (C) Extension of the deoxyfluoroalkylation–aromatization strategy of cyclohexanones can complement more common cross-coupling and radical functionalization strategies for preparing a broad spectrum of fluoroalkyl arenes.

Accessing fluoroalkyl arenes via deoxyfluoroalkylation–aromatization. To adapt the previously reported deoxytrifluoromethylation–aromatization sequence to other fluoroalkyl groups (–RF), adjustments would be needed to promote the 1,2-addition reactions. Using 4-phenyl-cyclohexanone as a model substrate, the 1,2-addition reaction was generally performed by activating an array of neutral fluoroalkyl precursors to generate a fluoroalkyl nucleophile (–RF) using one of a series of strategies via: (i) F induced activation of TMS–RF reagents, (ii) addition of Grignard reagent (R–Mg–X), (iii) addition of Reformatsky reagent (R–Zn–X), (iv) Li–halogen exchange reactions with MeLi, (v) base-mediated deprotonation of H–RF, or (vi) Mukaiyama aldol addition of α,α-difluoro silyl enol ethers (Tables 1 and 2). In most cases, a quick workup was performed to quench the reagents and separate the 1,2-addition product in semi-pure form, though no workup was required for reactions involving F induced activation of TMS–RF reagents. The 1,2-addition product was then subjected to dehydration–aromatization conditions previously reported with either: (i) a one-step procedure using p-toluenesulfonic acid monohydrate (PTSA·H2O) and 2,3-dichloro-5,6-dicyano-p-benzoquinone (DDQ) as aromatizing reagents under thermal conditions in o-dichlorobenzene (o-DCB; conditions A, Table 1), or (ii) a two-step protocol with thionyl chloride (SOCl2) and pyridine in tetrahydrofuran (THF) followed by a silica plug filtration to afford the vinyl–RF intermediate, and finally aromatization with DDQ under thermal conditions in o-DCB (conditions B, Table 2). Initially, the suitability of the reaction conditions was assessed by running small scale reactions (0.1 mmol) under both conditions, and the best conditions were subsequently repeated on a 0.5 mmol scale.

Table 1 Deoxyfluoroalkylation–aromatization to access perfluoroalkyl arenes (Ar–CnFm)

image file: d4cc06267a-u1.tif

Entry Product RF 1,2-Addition conditions Int. yield (19F NMR) (%) Prod. yield (isolated) (%)
a 24 h. b 36 h.
1 3a –C2F5 TMS–C2F5 (1.2 equiv.), CsF (0.1 equiv.), o-DCB (0.5 M), rt, 15 h 99 78a
2 3b –C3F7 TMS–C3F7 (1.2 equiv.), CsF (0.1 equiv.), o-DCB (0.5 M), rt, 15 h 99 53a
3 3c –C4F9 I–C4F9 (2.2 equiv.), MeLi (2 equiv.), LiBr (2 equiv.), Et2O (0.1 M), −78 °C, 2 h 93 47
4 3d –C5F11 I–C5F11 (2.2 equiv.), MeLi (2 equiv.), LiBr (2 equiv.), Et2O (0.1 M), −78 °C, 2 h 99 73
5 3e –C6F13 I–C6F13 (2.2 equiv.), MeLi (2 equiv.), LiBr (2 equiv.), Et2O (0.1 M), −78 °C, 2 h 99 83
6 3f –C(CF3)2F I–C(CF3)2F (2.5 equiv.), MeLi (3 equiv.), Et2O (0.2 M), −78 °C, 2 h 70 45b
7 3g –CF2CF2CH[double bond, length as m-dash]CH2 Br–CF2CF2CH[double bond, length as m-dash]CH2 (2.2 equiv.), MeLi (2 equiv.), Et2O (0.1 M), −78 °C, 2 h 73 46


Table 2 Deoxyfluoroalkylation–aromatization to access difluoromethylene-containing arenes and perfluorophenyl arenes

image file: d4cc06267a-u2.tif

Entry Product RF 1,2-Addition conditions Int. yield (19F NMR) (%) Prod. yield (isolated) (%)
a 80 °C. b Limiting reagent (0.5 mmol), 4-Ph-cyclohexanone (2 equiv.). c Instead of using a silica plug filter, the vinyl intermediate after the dehydration step was isolated.
1 3h –CF2H TMS–CF2H (2 equiv.), 20 mol% CsF, HMPA (5 equiv.), THF (0.5 M), 60 °C, 48 h 65 45
2 3i –CF2P(O)(OEt)2 H–CF2P(O)(OEt)2 (1 equiv.), LDA (1.2 equiv.), THF (0.25 M), −78 °C, 4 h 99 36
3 3j –CF2CO2Et Br–CF2CO2Et (2 equiv.), Zn (2 equiv.), THF (0.5 M), rt, 24 h 99 62
4 3k –CF2C(O)–Morph Br–CF2C(O)–Morph (2.5 equiv.), MeLi (3 equiv.), Et2O (0.1 M), −78 °C, 2 h 63 43a
5 3l –CF2C(O)Ph [(2,2-Difluoro-1-phenylvinyl)oxy]trimethylsilane (3 equiv.), TiCl4 (2 equiv.), DCM (0.5 M), 0 °C, 2 h 96 84
6 3m –CF2SO2Ph H–CF2SO2Phb, LiHMDS (2 equiv.), HMPA (15 equiv.), THF (0.5 M), −78 °C, 2 h 99 62c
7 3n –C6F5 F5C6–Mg–Br (1 equiv.), Et2O (0.12 M), reflux, 4 h 99 47


Perfluoroalkyl arenes (Ar–C n F m ). The deoxyfluoroalkylation–aromatization strategy efficiently translated to several perfluoroalkyl arene compounds (Ar–CnFm) (Table 1). For Ar–CnFm compounds, 1,2-addition reactions were typically performed by activating respective trimethylsilyl- or bromo/iodo-precursors and the operationally simple conditions A performed adequately for the dehydration–aromatization sequence. The introduction of –C2F5 and –C3F7 groups employed trimethylsilane reagents (TMSC2F5 and TMSC3F7) with 10% CsF in o-DCB for the 1,2-addition reaction, and subjection of the intermediates to conditions A delivered desired products 3a–3b in 78% and 53% yields, respectively. For these reactions, the respective TMS derivatives were used because these reagents are liquid at room temperature and easy to handle under ambient conditions relative to the iodide-derived counterparts that are gases at room temperature. Additionally, the stoichiometric silyl byproducts formed during the 1,2-addition step were compatible with the subsequent dehydration and aromatization steps. In contrast, the 1,2-addition products of other high order perfluoroarenes, Ar–C4F9 (3c),27 Ar–C5F11 (3d), Ar–C6F13 (3e), Ar–C(CF3)2–F (3f), and Ar–CF2CF2CH[double bond, length as m-dash]CH2 (3g) were accessed through Li–halogen exchange with respective iodide-containing reagents {(I–C4F9, I–C5F11, and I–C6F13,28 I–C(CF3)2–F)} or bromide-containing reagents (Br–CF2CF2CH[double bond, length as m-dash]CH2),29 respectively, and subsequent subjection of the reaction mixtures to conditions A delivered the desired products (3c–3g) in good to moderate yield. For these reactions, the iodides/bromides were preferred over the corresponding organosilane reagents for three reasons. First, they exist as stable and easily handled liquids at room temperature. Second, they are significantly cheaper (up to 140 times) than the silane-based derivatives. Third, in some cases, the corresponding organo-silane reagents are not available within commercial catalogues.

To access product 3f, we developed new conditions. Prior attempts to react ketones with –C(CF3)2–F exploited the corresponding Sn reagent (R–Sn–C(CF3)2–F),30 which was prepared from the corresponding iodo-reagent. To reduce the number of synthetic steps and avoid the use of Sn-based reagents, we performed 1,2-addition with commercially available iodo-reagent using a halogen–lithium exchange reaction with MeLi to generate the active nucleophile. In this reaction, we did not observe β-fluoride elimination of the intermediate organolithium species. Of note, attempts to generate and use the comparable Grignard or Reformatsky reagents failed for this substrate.

Difluoromethylene-containing arenes (Ar–CF 2 R) and perfluorophenyl arenes. The deoxyfluoroalkylation–aromatization strategy effectively translated to several difluoromethylene-containing arenes (Ar–CF2R) and perfluorophenyl arenes. Generally, conditions B (cat. DMAP, SOCl2, pyridine, THF, 50 °C; SiO2 plug; DDQ, o-DCB, 120 °C) performed better for dehydration–aromatization than conditions A (PTSA·H2O, DDQ, o-DCB, 140 °C) for these compounds. To access a difluoromethyl arene (Ar–CF2H, 3h), TMS–CF2H was used as a precursor for –CF2H. Using catalytic CsF and hexamethylphosphoramide (HMPA) at 60 °C, the reaction delivered the desired 1,2-addition intermediate,31 and the crude reaction mixture was subjected to conditions B to deliver desired compound 3h in 45% yield. The difluoromethyldiethylphosphonate [H–CF2P(O)(OEt)2] was deprotonated with LDA to generate the corresponding anion [CF2P(O)(OEt)2], which participated in the subsequent 1,2-addition reaction.32 Finally, subjection of the intermediate to conditions B delivered product 3i in 36% yield. The α,α-ethyl difluoroacetate anion (CF2CO2Et) was accessed from bromodifluoroethylacetate (Br–CF2CO2Et) using Zn0 to form a Reformatsky reagent in situ, which underwent the 1,2-addition reaction in quantitative yield.33 The crude reaction mixture was subjected to conditions B to deliver the desired compound 3j in 62% yield. To generate a substrate bearing a –CF2C(O)(morpholine) moiety, the anion was generated from the corresponding bromide via a halogen–lithium exchange reaction, and subsequent reaction with 4-phenylcyclohexanone (1) delivered the 1,2-addition intermediate. Subsequent dehydration and aromatization delivered the desired Ar–CF2C(O)morpholine product (3k) in 43% yield. In prior work, 1,2-addition reactions of –CF2C(O)(morpholine) initiated from the corresponding silane reagent [TMS–CF2C(O)(morpholine], which was prepared from the chloro-precursor.34 To reduce the number of steps and avoid the unnecessary use of Si-based reagents, we developed a direct 1,2-addition reaction with the corresponding halogen-containing reagent. Specifically, Br–CF2C(O)(morpholine) was lithiated using MeLi, and the resulting CF2C(O)(morpholine) anion smoothly reacted with 4-Ph-cyclohexanone (1) to deliver the 1,2-addition intermediate. In contrast, attempts to use Grignard and Reformatsky modes of addition were not successful. To access α,α-difluorinated ketone derivatives, the Mukaiyama aldol reaction of 2,2-difluoro silyl enol ethers with 4-Ph-cyclohexanone (1) in the presence of TiCl4 delivered the 1,2-addition product,35 which was then subjected to conditions B to deliver the desired Ar–CF2C(O)Ph product (3l) in 84% yield. The difluoro(phenyl)methyl)sulfonyl anion (CF2SO2Ph) was accessed by base-mediated deprotonation of the corresponding difluoromethylsulfonyl benzene (H–CF2SO2Ph) with HMPA as an additive,36 which underwent a 1,2-addition reaction. The resulting reaction mixture was then subjected to conditions B to deliver the desired compound 3m in 62% yield. The pentafluorophenyl anion [Ph(5-F)] was used in situ as a Grignard reagent (C6F5–Mg–Br), which underwent a 1,2-addition reaction,37 prior to subjecting the intermediate to conditions B to deliver the desired product 3n in 47% yield.

The deoxyfluoroalkylation–aromatization strategy provides access to valuable fluoroalkyl arene compounds in moderate to excellent yields. This conceptually distinct strategy exploits cyclohexanone substrates that differ from other common preparations of fluoroalkyl arenes, such as transition metal-catalyzed coupling reactions and radical addition reactions. Using a range of activation strategies, many fluoroalkyl precursors generated fluoroalkyl anions, which underwent a 1,2-addition reaction, followed by a dehydration–aromatization sequence to deliver different fluoroalkyl arene products. Considering the range of cyclohexanones that could serve as substrates for such a transformation, as demonstrated in previous work,26 this proof-of-concept study with alternate fluoroalkyl groups has many potential opportunities to be creatively employed to deliver highly substituted fluoroalkyl arenes that are beyond the scope of currently available technologies.

R. A. A. conceived the project. P. B. developed methodology for the project. P. B., S. K., and K. G. contributed to the investigation. Funding, project administration, and supervision were done by R. A. A., P. B. and R. A. A. wrote the original draft, and review and editing were done by all authors.

We gratefully acknowledge the support of the National Institutes of Health (GM124661, CA023168) and the donors of the Steve and Lee Ann Taglienti Endowment for supporting this project.

Data availability

The data supporting this article have been included as a part of the ESI.

Conflicts of interest

There are no conflicts to declare.

References

  1. S. Purser, P. R. Moore, S. Swallow and V. Gouverneur, Chem. Soc. Rev., 2008, 37, 320 RSC.
  2. E. P. Gillis, K. J. Eastman, M. D. Hill, D. J. Donnelly and N. A. Meanwell, J. Med. Chem., 2015, 58, 8315 CrossRef CAS.
  3. Y. Ogawa, E. Tokunaga, O. Kobayashi, K. Hirai and N. Shibata, iScience, 2020, 23, 101467 CrossRef CAS PubMed.
  4. B. M. Johnson, Y.-Z. Shu, X. Zhuo and N. A. Meanwell, J. Med. Chem., 2020, 63, 6315 CrossRef CAS.
  5. R. A. Altman, K. K. Sharma, L. G. Rajewski, P. C. Toren, M. J. Baltezor, M. Pal and S. N. Karad, ACS Chem. Neurosci., 2018, 9, 1735 CrossRef CAS PubMed.
  6. B. K. Park and N. R. Kitteringham, Drug Metab. Rev., 1994, 26, 605 CrossRef CAS.
  7. P. Shah and A. D. Westwell, J. Enzyme Inhib. Med. Chem., 2007, 22, 527 CrossRef CAS PubMed.
  8. H.-J. Böhm, D. Banner, S. Bendels, M. Kansy, B. Kuhn, K. Müller, U. Obst-Sander and M. Stahl, ChemBioChem, 2004, 5, 637 CrossRef.
  9. Y.-L. Xiao, W.-H. Guo, G.-Z. He, Q. Pan and X. Zhang, Angew. Chem., Int. Ed., 2014, 126, 10067 CrossRef.
  10. F. Pan, G. B. Boursalian and T. Ritter, Angew. Chem., Int. Ed., 2018, 57, 16871 CrossRef CAS PubMed.
  11. K. Fujikawa, Y. Fujioka, A. Kobayashi and H. Amii, Org. Lett., 2011, 13, 5560 CrossRef CAS PubMed.
  12. Z. Feng, Q.-Q. Min, Y.-L. Xiao, B. Zhang and X. Zhang, Angew. Chem., Int. Ed., 2014, 53, 1669 CrossRef CAS.
  13. Z. Feng, Y.-L. Xiao and X. Zhang, Org. Chem. Front., 2014, 1, 113 RSC.
  14. S. Hao, Z. Cai, W. Zhang, Y. Cao and X. Du, J. Heterocycl. Chem., 2022, 59, 88 CrossRef CAS.
  15. J. Li, W. Wan, G. Ma, Y. Chen, Q. Hu, K. Kang, H. Jiang and J. Hao, Eur. J. Org. Chem., 2016, 4916 CrossRef CAS.
  16. D. M. Ferguson, J. R. Bour, A. J. Canty, J. W. Kampf and M. S. Sanford, J. Am. Chem. Soc., 2017, 139, 11662 CrossRef CAS.
  17. L. Li, C. Ni, Q. Xie, M. Hu, F. Wang and J. Hu, Angew. Chem., Int. Ed., 2017, 56, 9971 CrossRef CAS.
  18. A. Lishchynskyi and V. V. Grushin, J. Am. Chem. Soc., 2013, 135, 12584 CrossRef CAS.
  19. B. Yang, D. Yu, X.-H. Xu and F.-L. Qing, ACS Catal., 2018, 8, 2839 CrossRef CAS.
  20. J. W. Beatty, J. J. Douglas, R. Miller, R. C. McAtee, K. P. Cole and C. R. J. Stephenson, Chem, 2016, 1, 456 CAS.
  21. D. A. Nagib and D. W. C. Macmillan, Nature, 2011, 480, 224 CrossRef CAS PubMed.
  22. Y. Ji, T. Brueckl, R. D. Baxter, Y. Fujiwara, I. B. Seiple, S. Su, D. G. Blackmond and P. S. Baran, Proc. Natl. Acad. Sci. U. S. A., 2011, 108, 14411 CrossRef CAS.
  23. C. Le, T. Q. Chen, T. Liang, P. Zhang and D. W. C. MacMillan, Science, 2018, 360, 1010 CrossRef CAS PubMed.
  24. F. Zhou, M. O. Simon and C. J. Li, Chem. – Eur. J., 2013, 19, 7151 CrossRef CAS PubMed.
  25. Z. Qiu, H. Zeng and C. J. Li, Acc. Chem. Res., 2020, 53, 2395 CrossRef CAS PubMed.
  26. P. Bhattarai, M. K. Abd El-Gaber, S. Koley and R. A. Altman, Nat. Commun., 2024, 15, 7882 Search PubMed.
  27. S. Yamada, K. Kinoshita, S. Iwama, T. Yamazaki, T. Kubota, T. Yajima, K. Yamamoto and S. Tahara, Org. Biomol. Chem., 2017, 15, 2522 RSC.
  28. A. Nagaki, S. Tokuoka, S. Yamada, Y. Tomida, K. Oshiro, H. Amii and J. I. Yoshida, Org. Biomol. Chem., 2011, 9, 7559 RSC.
  29. T. Konno, S. Takano, Y. Takahashi, H. Konishi, Y. Tanaka and T. Ishihara, Synthesis, 2011, 33 CrossRef CAS.
  30. T. Kitazume, Chem. Lett., 1981, 1337 CrossRef CAS.
  31. O. M. Michurin, D. S. Radchenko and I. V. Komarov, Tetrahedron, 2016, 72, 1351 CrossRef CAS.
  32. P. Beier, A. V. Alexandrova, M. Zibinsky and G. K. Surya Prakash, Tetrahedron, 2008, 64, 10977 CrossRef CAS.
  33. Y. Shen and M. Qi, J. Fluorine Chem., 1994, 67, 229 CrossRef CAS.
  34. A. Honraedt, A. Van Der Lee, J. M. Campagne and E. Leclerc, Adv. Synth. Catal., 2017, 359, 2815 CrossRef CAS.
  35. H. Amii, T. Kobayashi, Y. Hatamoto and K. Uneyama, Chem. Commun., 1999, 1323 RSC.
  36. G. K. Surya Prakash, J. Hu, Y. Wang and G. A. Olah, Eur. J. Org. Chem., 2005, 2218 CrossRef.
  37. N. Trapp, H. Scherer, S. A. Hayes, R. J. F. Berger, A. Kütt, N. W. Mitzel, J. Saame and I. Krossing, Phys. Chem. Chem. Phys., 2011, 13, 6184 RSC.

Footnotes

Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4cc06267a
Current Affiliation: Department of Chemistry, Saint Louis University, St. Louis, 63103, USA.

This journal is © The Royal Society of Chemistry 2025
Click here to see how this site uses Cookies. View our privacy policy here.