Open Access Article
Chaochao
Yan‡
a,
Qingfang
Li‡
a,
Kaige
Wang
a,
Wanni
Yang
a,
Jingyu
Han
a,
Yawen
Li
a,
Yunhong
Dong
a,
Dake
Chu
b,
Lin
Cheng
a and
Liping
Cao
*a
aCollege of Chemistry and Materials Science, Northwest University, Xi'an 710069, China. E-mail: chcaoliping@nwu.edu.cn
bDepartment of Gastroenterology, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an 710061, China
First published on 1st February 2024
Chirality transfer for natural chiral biomolecules can reveal the indispensable role of chiral structures in life and can be used to develop the chirality-sensing biomolecular recognition. Here, we report the synthesis and characterization of a series of achiral supramolecular organic frameworks (SOF-1, SOF-2, and SOF-3), constructed from cucurbit[8]uril (CB[8]) and tetraphenylethene (TPE) derivatives (1, 2, and 3), respectively, as chirality-sensing platforms to explore their chirality transfer mechanism for peptides in water. Given the right-handed (P) and left-handed (M) rotational conformation of TPE units and the selective binding of CB[8] to aromatic amino acids, these achiral SOFs can be selectively triggered in water by peptides containing N-terminal tryptophan (W) and phenylalanine (F) residues into their P- or M-rotational conformation, exhibiting significantly different circular dichroism (CD) spectra. Although various peptides have the same L-type chiral configuration, they can induce positive CD signals of SOF-1 and negative CD signals of SOF-2 and SOF-3, respectively. Based on the structural analysis of the linkage units between CB[8] and TPE units in these SOFs, a “gear-driven”-type chirality transfer mechanism has been proposed to visually illustrate the multiple-step chirality transfer process from the recognition site in the CB[8]'s cavity to TPE units. Furthermore, by utilizing the characteristic CD signals generated through the “gear-driven”-type chirality transfer, these SOFs can serve as chiroptical sensor arrays to effectively recognize and distinguish various peptides based on their distinctive CD spectra.
Benefiting from the multivalent supramolecular assembly, supramolecular organic frameworks (SOFs) could be fabricated from cucurbit[8]uril (CB[8]) and building blocks through the head-to-tail host–guest interactions in the aqueous phase.11 These CB[8]-based SOFs could easily realize various functions by utilizing different functional units as building blocks and encapsulating different guest molecules.12 In particular, as a unique class of supramolecular polymers, employing SOFs as a class of tools for specifically recognizing natural chiral biomolecules (e.g., amino acids and peptides) for broader biological applications is worth being explored.13 Tetraphenylethylene (TPE) molecules possess the propeller-like left-handed (M) and right-handed (P) rotational chiral conformations,14 endowing the ability of chirality sensing. Consequently, TPE molecules are the ideal building blocks for SOFs to explore the conformational chirality with dynamic properties, which can be utilized to achieve chirality transfer for chiral biomolecules. We attempted to construct varied TPE-based SOFs through the precise regulation of the building block structure, and to realize the differentiated chirality transfer for varied peptides, thereby finally establishing a kind of new chirality-sensing recognition system using SOFs.
Very recently, we reported a water-soluble TPE-based SOF (SOF-1), which was self-assembled from CB[8] and 1, and it could initially distinguish dipeptide sequences based on CD responses through chirality transfer.15 Based on this result, we further designed and synthesized TPE derivatives (2) with pyridinium-4-vinyl arms and (3) with pyridinium-4-ynyl arms, which could be self-assembled with CB[8] to form SOFs (SOF-2 and SOF-3) in aqueous solutions, respectively (Scheme 1). These achiral SOFs have the hydrophobic cavity of CB[8], which is the recognition site for aromatic amino acids,16 and possess the M- and P-rotational chiral conformations of TPE units, which are chirality-responsive groups for chirality transfer. Therefore, SOFs could be ideal hosts for aromatic amino acids and peptides. Interestingly, peptides with the same L-type chiral configuration induced completely opposite CD spectra: aromatic amino acids such as tryptophan (W) and phenylalanine (F), as well as peptides containing different numbers of aromatic residues (e.g., WW and FF), induced chiral M-SOF-1 with positive CD signals, while the same guests induced chiral P-SOF-2 and P-SOF-3 with negative CD signals (Scheme 1). Furthermore, the M- or P-rotational conformation chirality of SOFs can be selectively induced by N-terminal W-/F-containing tripeptides not C-terminal ones based on the selective recognition of CB[8]. Therefore, according to different SOFs having characteristic chiral response signals for same chiral guests, SOFs could serve as chiroptical sensor arrays, which can effectively enhance the accuracy of molecular recognition.
:
2 stoichiometry of 2 and CB[8] in SOF-2 (Fig. S9†). And the 1H NMR titration experiment of 3 and CB[8] also showed similar results for proton resonance broadening, indicating the formation of SOF-3 in solution (Fig. S10†). The isothermal calorimetric titration (ITC) experiments also confirmed a 1
:
2 stoichiometry with a strong ternary binding constant (Ka) of ≈ 1013 M−2, indicating that building blocks 2 or 3 can effectively bind with CB[8] to form a supramolecular assembly (Fig. 1b and S11†). Meanwhile, the Job's plot analysis also indicated a 1
:
2 stoichiometry in SOF-2 and SOF-3 (Fig. S12 and S13†).
Additionally, dynamic light scattering (DLS) experiments showed that the average hydrodynamic diameter (DH) values of SOF-2 and SOF-3 are significantly larger than those of the monomer molecules, which clearly indicates the formation of large supramolecular assemblies. Concentration-dependent DLS showed that SOF-2 possessed various DH of ≈ 414 nm–1190 nm in the 10 μM–50 μM range owing to the reversible host–guest complexation (Fig. S14a†). Similarly, concentration-depended DLS showed that SOF-3 was stable with DH of ≈ 516 nm–1238 nm in the 10–50 μM range (Fig. S14b†). The ζ-potential experiments showed that SOF-2 (43.7 ± 0.6 mV) has a higher positive ζ-potential than 2 (17.9 ± 0.5 mV), and SOF-3 (39.8 ± 0.6 mV) also has a higher positive ζ-potential than 3 (16.3 ± 0.6 mV), indicating that SOF-2 and SOF-3 have high stability due to the repulsive forces among these large multiple-cationic supramolecular assemblies (Table S1†). These results clearly indicate the formation of large and stable supramolecular assemblies from monomer molecules (2 or 3) and CB[8] in the aqueous solution.
The photophysical properties of the supramolecular systems of 2 or 3 with CB[8] in water were studied by UV-vis and fluorescence experiments. Initially, UV-vis titration experiments between 2 and CB[8] showed that upon increasing the amount of CB[8], the intensities of the three absorbance peaks at 273 nm, 331 nm, and 407 nm decreased in intensity, and were red shifted to 275 nm, 357 nm, and 421 nm, respectively, with three isosbestic points at 343 nm, 367 nm, and 436 nm (Fig. 1c). These results show that through the host–guest interaction between 2 and CB[8], the flexible rotation of the alkene bonds in monomer 2 is effectively limited, and the intermolecular conjugation and charge-transfer (CT) between 2 molecules are enhanced through the CB[8]'s dimerization. As illustrated in Fig. 1d, the solution of free 2 in water displayed a weak orange emission with low absolute quantum yield (ΦF = 0.77%) and short fluorescence lifetime (τ = 0.88 ns). When 0–2.0 equiv. of CB[8] was added to the solution of 2 to form SOF-2 in water, the maximum emission peak with higher absolute quantum yield and fluorescence lifetime (ΦF = 3.31%, τ = 1.32 ns) was red shifted from 580 nm to 600 nm (Fig. S15 and Table S2†). Similarly, the formation of SOF-3 was confirmed by UV-vis and fluorescence titrations in aqueous solution. In the case of 3, the addition of CB[8] (0–2.0 equiv.) resulted in absorbance peaks at 275 nm, 317 nm, and 386 nm which decrease slightly in intensity, giving two isosbestic points at 340 nm and 359 nm. Furthermore, the absorbance maximum at 386 nm, which belongs to the π–π* transition of the TPE unit, was slightly blue-shifted to 379 nm, indicating that the formation of SOF-3 restricts the rotation of TPEs to decrease the conjugation of TPE units (Fig. S17a†). The fluorescence spectrum of free 3 in water displayed a yellow emission (λmax = 640 nm) upon excitation at 395 nm. When 0–2.0 equiv. of CB[8] was added to the solution of 3 to form SOF-3 in water, the emission wavelength was blue-shifted to 608 nm, because of the decrease in the degree of conjugation of the TPE core, as a result of the restriction of rotation (RIR) of TPEs in SOF-3 (Fig. S17b†).17
Finally, the solid structure of SOFs was investigated by scanning electron microscopy (SEM), transmission electron microscopy (TEM), and synchrotron small-angle X-ray-scattering (SAXS). SEM images of the solid samples obtained from aqueous solutions of SOF-2 and SOF-3 revealed the presence of large supramolecular assemblies compared to small particles of 2 and 3 in water (Fig. S18 and S19†). TEM images showed distinct sheet-like structures and the sizes of such nanosheets were estimated to range from approximately one-hundred to several-hundred nanometers (Fig. 1e and S20†). In addition, SAXS analysis of solid samples of SOF-2 and SOF-3 displayed peaks centered at ∼1.5 nm, confirming the regularity of the framework structure (Fig. S21†). All these results strongly suggested the formation of supramolecular organic frameworks.
Initially, W and its peptides (e.g., WW, WWW, and WWWW) were selected as chiral guests to investigate the chirality transfer of the SOF system. Interestingly, these guests with the same L-type chiral configuration induced diametrically opposite chiroptical responses of different SOFs (Fig. 2). In SOF-1, W and its peptides could almost induce obvious positive Cotton effects in the long-wavelength (315 nm–470 nm) region with different intensities, respectively, which is attributed to the excess of M-conformational TPE units of SOF-1 (Fig. 2b and S22†), whereas the same amino acid and peptides induced the formation of chiral P-SOF-2 and P-SOF-3, characterized by an abundance of P-conformational TPE units, which in turn results in negative CD signals (Fig. 2c, d and S23–S24†).
Inspired by the gear-driven machinery, we proposed a “gear-driven”-type chirality transfer mechanism to illustrate the process of multiple-step chirality transfer in SOFs (Fig. 2a). In SOF-1, 1 is composed of three parts: the terminal coumarin arm within CB[8], the pyridine group, and the central TPE unit, which represent the driving gear, driven gear, and output gear in a three-stage gear-driven machinery, respectively. It is worth noting that the rotational direction of adjacent gears is always opposite in gear-driven machinery. Therefore, in the three-stage gear-driven machinery, the rotational directions of the driving gear and the spaced output gear are consistent. In the context of this chirality transfer system, chiral guests with positive CD signals around 200 nm in the CD spectrum act as the “driving gear” (Fig. S25†). They induced the formation of M-SOF-1 with positive Cotton effects, characterized by TPE units as the “output gear” expressing an abundance of M-rotational conformations (Fig. 2b). In the structures of 2 and 3, alkene bonds or alkyne bonds between TPE and pyridine units are the addition of another gear in the middle of the driven gear and the output gear, thus changing the rotational direction of the output gear. As a result, as output units for multiple-step chirality transfer, there is an excess of P-rotational conformations of TPE units in SOF-2 and SOF-3 (Fig. 2c and d). In these chirality transfer systems, the cavity of CB[8] in SOFs serves as the starting point and the end point is TPE units, respectively. Compared with SOF-1, SOF-2 and SOF-3 have more “transmission shaft” units and longer distance of chirality transfer, due to the introduction of alkene bonds or alkyne bonds between TPE and pyridine units. Through this precise control of “transmission shaft” structure to achieve multiple-step chirality transfer, different SOFs exhibit completely opposite chiroptical signals for the same chiral guest.
To further expand the scope of multiple-step chirality transfer in the SOF system, another aromatic amino acid F and its peptides (e.g., FF, FFF, and FFFF) were selected as chiral guests. CD experiments showed that F and its peptides also induced M-SOF-1 with positive CD and P-SOF-2 and P-SOF-3 with negative CD, which is consistent with W and its peptides (Fig. 2e–g and S26–S28†). Notably, only FF induced P-SOF-1 with negative CD. This was probably attributed to FF undergoing a conformation change from fold to unfold state due to the binding behaviour within the cavity of CB[8], accompanied by a CD inversion from positive to negative around 200 nm in SOF-1 (Fig. S29†).20 This corresponds to the change in the rotational direction of the driving gear in the three-stage gear-driven machinery. As a result, the TPE unit acts as the “output gear” to express the opposite rich P-conformation with a negative CD signal. The CD response of SOFs to peptide guests strongly suggests that the “gear-driven”-type chirality transfer can properly elucidate the “gear-driven”-type chirality transfer mechanism of the SOF system.
Moreover, the opposite chirality transfer of SOFs triggered by pairs of enantiomers W/Wd, WW/WdWd, F/Fd, and FF/FdFd exhibited the chiral adaptation, respectively, leading to mirror-symmetric CD spectra (Fig. 3a). CD spectra of SOF-1 titrated with WW/WdWd are shown separately: WW induced M-SOF-1 with a positive Cotton effect, whereas WdWd induced P-SOF-1 with a negative Cotton effect (Fig. 3b). In contrast, SOF-2 and SOF-3 with an added gear showed diametrically opposite results when compared to SOF-1. WW induced P-SOF-2 and P-SOF-3 with negative Cotton effects, whereas WdWd induced M-SOF-2 and M-SOF-3 with positive Cotton effects (Fig. 3c and d). Similarly, W/Wd, F/Fd, and FF/FdFd also could induce corresponding CD spectra with a mirror image, respectively (Fig. 3e–g and S30–S35†). It should be noted that SOF-3 exhibits weaker CD responses to these amino acids and dipeptides, possibly due to the lower conjugation of the triple bond and the longer chiral transfer distance in SOF-3. The results of adaptive chirality transfer further confirm that altering the absolute configuration of chiral guests in SOF systems corresponds to switching the rotational direction of the driving gear in the gear-driven chirality transfer process, further leading to the output of TPE units with opposite rotational conformations. All these results demonstrate that the “gear-driven”-type mechanism of the chirality transfer aligns perfectly with the chirality sensing observed in the SOF system.
Therefore, we envisioned using varied SOFs as chiroptical sensor arrays and employing the data analysis method of principal component analysis (PCA) to convert the rich differential information contained in the CD response fingerprint into interpretable classification data, thereby further effectively differentiating these chiral biomolecules.23 As shown in Fig. 4e, the PCA score plot of the top two factors of contribution (PC1, PC2) accounted for 99.1% of the total variance. Notably, the 95% confidence ellipse produced by the statistical PCA evaluation contained little overlaps between 8 distinguished peptide clusters. The 3D PCA results showed further distinction of all selected molecules absolutely (Fig. 4f). These results demonstrate that using SOFs as chiroptical sensor arrays can significantly enhance the accuracy of molecular recognition, allowing for a more precise differentiation and analysis of chiral biomolecules.
The CD titration experiments showed that WGG with the W residue located at the N-terminal induced the M-rotational conformation of TPE units of SOF-1 with a positive Cotton effect (Fig. 5b), while inducing the P-rotational conformation of TPE units of SOF-2 and SOF-3 with negative Cotton effects (Fig. 5c and S37). This result further expands the scope of the “gear-driven”-type chirality transfer, while GWG and GGW, in which W residue is located at the middle and C-terminal, couldn't induce any obvious CD signals (Fig. 5d and S38–S40†). Moreover, ITC of SOFs titrated with peptides confirmed their energy-favourable binding behavior (Fig. S41–S49†). And DLS experiments also confirmed that the binding behavior of SOFs and peptides did not destroy the aggregation state of the SOF complexes (Fig. S50–S53†). Therefore, these results further confirmed that the selective recognition of aromatic amino acid residues located at the N-terminal with CB[8] is a crucial factor for triggering the chirality transfer process in SOFs. Strong host–guest interactions lead to the binding behavior of chiral guests within the pores of SOFs, ultimately achieving chirality transfer from the guests to the TPE units to induce the conformational chirality of achiral SOFs.
Footnotes |
| † Electronic supplementary information (ESI) available: Experimental details including NMR, ITC, DLS, UV/vis, fluorescence, SEM, TEM, SAXS, and CD data. See DOI: https://doi.org/10.1039/d3sc06349f |
| ‡ These authors contributed equally. |
| This journal is © The Royal Society of Chemistry 2024 |