Open Access Article
Hamdy Khamees Thabet
*a,
Ahmed Ragab
*b,
Mohd Imranc,
Mohamed Hamdy Helala,
Saleh Ibrahim Alaqelc,
Ahmed Alshehride,
Abida Ash Mohdc,
Saleh Saad Alshammaria,
Yousry A. Ammar
b and
Moustafa S. Abusaif
b
aDepartment of Chemistry, College of Sciences and Arts, Northern Border University, Rafha, 91911, Saudi Arabia. E-mail: Hamdy.salem@nbu.edu.sa
bDepartment of Chemistry, Faculty of Science (Boys), Al-Azhar University, Nasr City, 11884, Cairo, Egypt. E-mail: ahmed_ragab@azhar.edu.eg; Ahmed_ragab7@ymail.com
cDepartment of Pharmaceutical Chemistry, College of Pharmacy, Northern Border University, Rafha 91911, Saudi Arabia
dDepartment of Pharmacology and Toxicology, College of Pharmacy, Northern Border University, Rafha 91911, Saudi Arabia
eDepartment of Pharmacology, College of Clinical Pharmacy, Imam Abdulrahman Bin Faisal University, King Faisal Road, Dammam 31441, Saudi Arabia
First published on 14th May 2024
A new series of 2-imino or 2-oxo-2H-chromene-6-sulfonamide derivatives 2–9 with potential anti-diabetic activity were designed and synthesized. The new 6-sulfonamide chromenes were synthesized by reacting 3-formyl-4-hydroxybenzenesulfonyl chloride with activated methylene derivatives in the presence of ammonium acetate as a catalyst. The structure of the products was confirmed by spectroscopic analysis. All the designed derivatives 2–9 were evaluated for their activity against α-amylase and exhibited inhibitory percentage values higher than 93% at 100 μg mL−1. Additionally, the IC50 values represented a variable degree of activity with two derivatives 2 and 9 exhibiting the most promising derivative results with IC50 values of 1.76 ± 0.01 and 1.08 ± 0.02 μM, respectively, compared to Acarbose (IC50 = 0.43 ± 0.01 μM). Additionally, these derivatives showed potency against the α-glucosidase enzyme with IC50 values of 0.548 ± 0.02 and 2.44 ± 0.09 μg mL−1, compared to Acarbose (0.604 ± 0.02 μg mL−1). Moreover, the in vitro PPAR-γ transactivation assay revealed that chromene-6-sulfonamide derivatives 2 and 9 exhibited potential PPAR-γ activity with IC50 values of 3.152 ± 0.03 and 3.706 ± 0.32 μg mL−1, respectively, compared to Pioglitazone (4.884 ± 0.29 μg mL−1). This indicates that these derivatives have insulin sensitivity and glucose metabolism activity. The in silico ADMET prediction showed that these derivatives have an acceptable range of oral bioavailability, drug-likeness, and a safe toxicity profile, including being non-cytotoxic, non-mutagenic, non-immunotoxic, and non-carcinogenic. Finally, computational docking analysis demonstrated the ability of these derivatives to interact with α-amylase, α-glucosidase, and PPAR-γ enzymes, with confirmed successful placement due to good binding energy values and various interactions within the pocket.
Coumarin is a heterocyclic compound containing one oxygen atom in its bicyclic ring and exhibited extensive application in designing new potent therapeutic molecules.16 Coumarine naturally occurs in several plants, including green tea, tonka beans, yellow sweet clover, chicory, lavender, and cassia.17 Researchers and drug developers prefer coumarin compounds due to their advantages of multiple targets and low toxicity. Coumarin and its derivatives have antimutagenic, antiviral, antioxidant,18 antibacterial,19 and anticancer activities.18,20 Moreover, the coumarin derivatives exhibited many bioactive potentials against monoamine oxidase, carbonic anhydrase, cholinesterase, urease, topoisomerase, lipoxygenase, alkaline phosphatase, histone deacetylase, α-glucosidase, and cyclooxygenase.21 Additionally, many coumarin derivatives inhibit the α-glucosidase and α-amylase.22,23 The extraction of Anacardiumouest Linn plant containing coumarins and terpenoids was shown to lower blood glucose levels in diabetic rats.24 Besides, umbelliferone (7-hydroxycoumarin) is used to reduce blood glucose levels.25,26 H. Sun et al., synthesized new coumarin–flavonoid hybrids, as compound I that displayed glucosidase inhibitory activity with IC50 value of 1.47 ± 0.07 μM (Acarbose = 224.70 ± 14.14) and amylase with IC50 value of 6.89 ± 1.17 μM (Acarbose = 2.72 ± 0.30 μM).27 Asgari et al., developed a new bis-coumarin derivatives conjugated with 1,2,3-triazole nucleus to exhibit IC50 values of compound II (IC50 = 13.0 ± 1.5 μM) and compound III (IC50 = 16.4 ± 1.7 μM) against α-glucosidase inhibitory activity.28 In addition, Elahabaadi et al., modified coumarin with dithiocarbamate and found that the introduction of a nitro group at meta or para position at the phenyl ring of carbamate moiety led to high activity against α-glucosidase enzyme with IC50 values of for compound IV (IC50 = 101.6 ± 4.7 μM) and compound V (IC50 = 85.0 ± 4.0 μM).29 Channabasappa et al., synthesized new chorine with triazole fragment compound VI, demonstrating inhibitory activity to a-amylase with IC50 = 4.11 μM compared to Acarbose = 2.66 μM (ref. 23) Fig. 1.
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| Fig. 1 Structure of the previously reported chromone derivatives as anti-diabetic agents as α-glucosidase and α-amylase inhibitors. | ||
Furthermore, the scientific community's interest became more attractive to the sulfonamide (–SO2NH2) core due to the wide variety of biological activity, such as anti-HIV, antimalarial, antithyroid, anticancer, high ceiling diuretic, insulin-releasing antidiabetic, carbonic anhydrase activity, and antimicrobial activity.30–36 Recently, in 2022, the FDA approved some new sulphonamides as Mitapivat is a pyruvate kinase activator (used to treat hemolytic anemia),37 Baricitinib as a selective Janus Kinase 1 (JAK 1) inhibitor (used to treat atopic dermatitis and severe rheumatoid arthritis),38 Vonoprazan is an acid blocker for potassium-competitive (used to treat H. pylori), and Omidenepag isopropyl used to reduce the intraocular pressure for glaucoma patients.28
As a result of all the findings above, we urgently need additional drugs to compensate for the shortcomings of current drugs. Moreover, modification of the bioactive core to design a new heterocyclic for a specific target is our research group goal.39–41 Herein, this article synthesized a new 2H-chromene 6-sulfonamide. Moreover, all the designed derivatives are chosen to investigate the in vitro α-amylase inhibitory activity. The most active members were also used for further evaluation against α-glycosidase and PPAR-γ. Finally, the in silico ADMET and docking simulation was undertaken to determine the oral bioavailability, toxicity, and binding mechanism, including the interacting groups inside the active site of the pocket.
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| Scheme 1 Illustrate synthesis of 3-substituted-2-imino-2H-chromene-6-sulfonamide 2 & 3 and 3-substituted-2-oxo-2H-chromene-6-sulfonamide 4 & 5. | ||
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| Scheme 2 Mechanism illustrated the synthetic approach of 3-cyano-2-imino-2H-chromene-6-sulfonamide 2. | ||
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| Scheme 3 Synthesis of the target N-(substitutedphenyl)-2-imino-6-sulfamoyl-2H-chromene-3-carboxamide 6–9. | ||
Firstly, the sulfonyl chloride derivative 1 is allowed to react with an equimolar amount of malononitrile in the presence of ammonium acetate via one-pot synthesis, yielding the corresponding 3-cyano-2-imino-2H-chromene-6-sulfonamide (2) as a high pure biomaterial (Scheme 1). The authors examined the physical properties of this product as a light-orange powder, in an excellent yield, with recorded melting point at 190–192 °C.
The chemical structure of the designed derivatives was confirmed using elemental analysis and spectral data. So, the IR data of compound 2 displayed the lack of absorption band at around 1680 cm−1 related to the carboxaldehyde group (–CHO). Also, the IR chart revealed new sharp stretching frequencies at ν 3414, 3335, 3233 cm−1 related to the NH2 sulfonamide moiety and NH of the 2-imino chromene (C
NH), besides absorption bands at ν 2203, 1620, 1592, 1399, and 1185 cm−1 assignable to CN, C
NH, C
C, and SO2 functions, respectively. Moreover, its 1H NMR spectra showed two singlet signals in the down-field region at δ 8.76 and 9.39 ppm due to 4H-pyran and NH proton. Also, other singlet proton signals at δ 8.10 ppm due to the NH2 function of sulfonamide moiety, aromatic protons as doublet signal at δ 7.32 ppm corresponding to the proton of H8-chromene with coupling constant (J = 8.8 Hz), doublet of doublet signal equivalent to H7-chromene at δ 7.86 ppm with coupling constant (J = 8.4, 4.0 Hz), and singlet signal at 8.39 ppm for the H5-chromene. Furthermore, the 13C NMR spectrum represented only ten signals equivalent to the compound's total carbon atoms. The chart displayed signals at δ 96.01, 111.45, and 116.21 ppm related to carbon attached to the cyano group, C4 of pyran moiety, and cyano group, respectively. Although, in the downfield, other signals appeared at δ 138.12, 157.90, and 160.53 ppm related to carbon attached to sulfonamide moiety, carbon of (O–C
C), and carbon attached to imino function (C
NH), respectively. Besides signals of aromatic carbons in the middle region ranging between δ 118.25–131.91 ppm equivalent to four aromatic carbons.
In the same way, the other aliphatic activated methylene, such as 2-amino-1,1,3-propenetricarbonitrile, ethyl acetoacetate, and diethyl malonic acid is reacted with sulfonyl chloride salicylaldehyde 1 in the presence of ammonium acetate as a reagent and catalyst, afforded the corresponding 3-(1-amino-2,2-dicyanovinyl)-2-imino-2H-chromene-6-sulfonamide (3), 3-acetyl-2-oxo-2H-chromene-6-sulfonamide (4), and ethyl 2-oxo-6-sulfamoyl-2H-chromene-3-carboxylate (5), respectively (Scheme 1). The physical properties of the three bioactive materials were examined as pure materials and recorded in the experimental section. Also, the chemical structures of the same compounds were confirmed using elemental analysis and spectral data (IR, 1H NMR, and 13C NMR). For example, the IR analysis of 2-oxo-chromene derivative 5 confirmed the presence of strong absorption frequencies at ν 3183, 3064, 1765, and 1710 cm−1 related to the NH2 of sulfonamide function, sp2-CH group, and two carbonyl functions, respectively. Also, two frequencies of sulfonyl moiety (SO2) at ν 1366, 1180 cm−1. Continuously, 1H NMR spectral of the same compound revealed new signals shielded in the up-field region as triplet signal at δ 1.29 ppm due to methyl protons of ester and quartet signals for methylene protons of ester at δ 4.27 ppm, as well as two significant singlet signals at δ 6.78 and 8.96 ppm related to the amino protons (NH2) and 4H-pyran, respectively. Meanwhile, the aromatic protons appeared as two doublet signals at δ 7.61 and 7.92 ppm with the same coupling constant (J = 7.2 Hz) identified to H8 and H7-chromene, respectively. In addition, a singlet signal appears at δ 8.40 ppm H5-chromene. Furthermore, its 13C NMR showed two signals at δ 13.99 and 60.58 ppm owing to carbons of the ester group, respectively. In addition, signals at δ 140.33, 156.58, 161.62, and 168.14 attributed to carbon attached to the sulfonyl group, carbon attached to (O–C
C), carbonyl of 2-oxo chromene, and carbonyl of the ester group, respectively.
As described in Scheme 2, the mechanistic pathway illustrated the synthetic pathway for producing the target bioactive 2-imino-2H-chromene derivative 2 as an example. Firstly, the mechanistic pathway moves forward via the nucleophilic addition of NH3 (liberated from ammonium acetate) to the sulfonyl chloride group (SO2Cl) to produce the sulfonamide moiety (intermediate i) by liberating the HCl that reacted with an excess of ammonia and formed ammonium chloride (NH4Cl) as a by-product. Secondly, the ammonium acetate works as a source of ammonia that pulls a proton from malononitrile to form an active carbanion malononitrile, which is allowed to react with the formyl group in (intermediate i) via condensation reaction to yield the non-isolable (intermediate ii) that subsequently underwent intramolecular cyclization through nucleophilic attack of the phenolic hydroxyl (OH) group to the nitrile function to furnish the desired product 2.
Furthermore, the authors planned to produce some bioactive chromene containing carboxamide group via only a simple one-pot reaction process. According to the previous strategy, the starting material 1 is heated under reflux with different active cyano-acetanilide derivatives A1–A4 in the presence of ammonium acetate and yielding the corresponding N-(substitutedphenyl)-2-imino-6-sulfamoyl-2H-chromene-3-carboxamide 6–8 (Scheme 3). The IR spectra of the carboxamide derivatives 6–8 revealed characteristic frequencies around ν 3431–3430 cm−1 related to the NH2 and NH groups, besides two distinct bands related to the carbonyl groups of 2-oxo-chromene and the carbonyl of the amide function at ν 1727–1726, and 1655–1654 cm−1, respectively. The 1H NMR data of compound 6 exhibited four sharp singlet signals at δ 6.90, 8.43, and 10.46 ppm due to the amino protons, H4-chromene, and NH proton, respectively. The 19F NMR spectra of compounds 6 and 7 revealed signals at δ −118.03 and −61.28 ppm related to C–F and CF3, respectively, and these values fall within the range of the reported values.47,48
Finally, the bioactive material ethyl 4-(2-oxo-6-sulfamoyl-2H-chromene-3-carboxamido)benzoate (9) was isolated through the reaction of compound 1, ethyl 4-(2-cyanoacetamido)benzoate (A4), and ammonium acetate in ethanolic solution under reflux condition for 5 hs and in the presence of ammonium acetate as a catalyst. In an acceptable yield, the compound is isolated as a pale-orange powder with melting point = 233–235 °C. The IR spectra viewed bands at ν 3430, 1726, and 1655 cm−1 due to NH2, carbonyl of 2-oxo chromene, and the carbonyl of the amide function, respectively. Its 1H NMR data displayed the two signals in the up-field region at δ 1.24 and 4.18 ppm corresponding to the ester protons as a triplet and quartet splitting and signals de-shielded at δ 5.91, 7.99, and 10.23 ppm assignable to the amino of sulfonamide, H4-chromene, and NH amide protons, respectively. Besides, the aromatic protons ranged from δ 6.92–7.60 ppm. The 13C NMR spectra of the same compound displayed significant signals at δ 14.76, 61.03, 157.58, 163.46, and 166.20 ppm, equivalent to methyl carbon, methylene carbon, carbonyl of 2-oxo chromene, amide carbonyl carbon, and carbonyl of ester group respectively.
| Cpd no. | The α-amylase activity | |
|---|---|---|
| Inhibitory percentage at 100 μg mL−1 | IC50 ± SD (μM) DF = 100 | |
| 2 | 96.1 | 1.76 ± 0.01 |
| 3 | 96 | 14.62 ± 0.16 |
| 4 | 94.2 | 8.55 ± 0.31 |
| 5 | 93.4 | 32.58 ± 0.33 |
| 6 | 95.4 | 2.11 ± 0.03 |
| 7 | 96.2 | 4.39 ± 0.06 |
| 8 | 95.4 | 4.23 ± 0.06 |
| 9 | 96.6 | 1.08 ± 0.02 |
| Acarbose | 96.5 | 0.43 ± 0.01 |
As represented in Table 1, the 2-oxo-6-sulfamoyl-2H-chromene-3-carboxamide derivative 9 emerged the most active hypoglycemic agent by inhibiting the α-amylase enzyme with IC50 value of 1.08 ± 0.02 μM. In addition, the 3-cyano-2-imino-2H-chromene-6-sulfonamide (2) revealed the second active member among the synthesized derivatives with IC50 value of 1.76 ± 0.01 μM compared to Acarbose (IC50 = 0.43 ± 0.01 μM). The activity of the synthesized derivatives was displayed due to two positions only in the chromene nucleus: the imino or carbonyl at position two and the fragments at position three (cyano, vinyl, ethyl acetate, acetyl, and carboxamide). Firstly, for the imino group, grafting the cyano as compound 2 increases the inhibitory potency by nearly 8.31-fold when replaced with 1-amino-2,2-dicyanovinayl derivative 3, indicating that an increase in the conjugation system at position three decreases the activity.
On the other hand, the IC50 values displayed introducing the carboxamide moiety with different substituents at position three of chromenes 6–9 demonstrated inhibitory activity with IC50 values ranging from 1.08 ± 0.02 to 4.39 ± 0.06 μM (i.e., below 5 μM). Generally, introducing the electron-withdrawing groups at the para position is more effective than the meta position. Additionally, introducing N-(4-fluorophenyl)-3-carboxamide fragment showed IC50 value of 2.11 ± 0.03 μM, while replacing the fluoro with chloro atom decreased the α-amylase activity enzyme with IC50 value of 4.23 ± 0.06 μM. Further, the replacement of N-(4-fluorophenyl)-3-carboxamide in compound 6 with -N-(3-(trifluoromethyl)phenyl), as showed in compound 7 to increase the number of fluorine atoms, reduces the activity with nearly two folds and demonstrated IC50 value of 4.39 ± 0.06 μM. To our surprise, replacing the halogenated atoms (4-F and 4-Cl) or 3-trifluoromethyl with ethyl carboxylate group (COOEt) causes an increase in the activity with IC50 value of 1.08 ± 0.02 μM. Furthermore, replacing the carboxamide on 2-oxo-2H-chromene pharmacophore with ethyl carboxylate or acetyl group causes reduction in the activity with IC50 values for compound 4 (IC50 = 8.55 ± 0.31 μM) and compound 5 (IC50 = 32.58 ± 0.33 μM) indicating the presence of amide group and its aromatic moiety is important in activity Fig. 2.
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| Fig. 2 General structure with different substituents that exhibited the activity and SAR study of the newly designed chromene derivatives 2–9. | ||
Finally, the designed chromene demonstrated α-amylase inhibitory activity. Additionally, the SAR study showed that the carboxamide in position three and the carbonyl group in position two are essential in reducing glucose levels by inhibiting the α-amylase enzyme. Moreover, any change in these two groups by introducing esters or acetyl instead of carboxamide doesn't enhance the α-amylase activity, except for inserting a cyano group at position three and replacing carbonyl with an imino group.
| Cpd no. | α-Glucosidase activity | |
|---|---|---|
| Inhibitory potential at 10 μg mL−1 | IC50 ± SD (μg mL−1) DF = 100 | |
| 2 | 90.7 | 0.548 ± 0.02 |
| 9 | 83.8 | 2.44 ± 0.09 |
| Acarbose | 90.1 | 0.604 ± 0.02 |
| Cpd No | PPAR-γ | |
|---|---|---|
| IC50 ± SD (μg mL−1) | Folds | |
| 2 | 3.152 ± 0.03 | 1.55 |
| 9 | 3.706 ± 0.32 | 1.32 |
| Pioglitazone | 4.884 ± 0.29 | 1 |
The most active 6-sulfamoyl-2H-chromene derivatives (2 and 9) and positive controls (Acarbose and Pioglitazone) exhibited a safe profile to non-cytotoxic, non-mutagenic, non-immunotoxic (except for Acarbose that showed activity with a probability value of 0.99), and non-carcinogenic. Fortunately, 3-cyano-2-imino-2H-chromene-6-sulfonamide (2) revealed non-hepatotoxic activity compared to other tested compound 9 and positive controls. Moreover, 6-sulfamoyl-2H-chromene derivatives 9 and Pioglitazone belong to class IV in the toxicity class with LD50 expected values of 1000 mg kg−1, while the 2-imino-2H-chromene-6-sulfonamide derivative 2 (class V with LD50 = 4870 mg kg−1) and Acarbose (class VI with LD50 = 24
000 mg kg−1). The tested derivatives were predicted to be inactive members to in term of heat shock factor response element (HSE) (increase in temperature), mitochondrial membrane potential (MMP), and phosphoprotein p53 gene (Table 4).
| Oral toxicity prediction | Most active 6-sulfamoyl-2H-chromene derivatives (2 and 9) and positive controls Acarbose and Pioglitazone | ||||
|---|---|---|---|---|---|
| 2 | 9 | Acarbose | Pioglitazone | ||
| a For ADMETlab2.0 the values described as: −3 = (high safe with probability ∼ 0.0–0.1); −2 = (moderate safe with probability ∼ 0.1–0.3); −1 = (safe with probability ∼ 0.3–0.7); +1 = (low risk with probability ∼ 0.5–0.7); +2 = (moderate risk with probability ∼ 0.7–0.9); and +3 = (high risk with probability ∼ 0.9–1.0). | |||||
| Oral toxicity prediction | |||||
| ProTox-II prediction | LD50 mg kg−1 | 4870 | 1000 | 24 000 |
1000 |
| Toxicity class | V | IV | VI | IV | |
| Hepatotoxicity | Inactive | Active | Active | Active | |
| 0.66 | 0.53 | 0.65 | 0.51 | ||
| Carcinogenicity | Inactive | Inactive | Inactive | Inactive | |
| 0.50 | 0.62 | 0.84 | 0.52 | ||
| Immunotoxicity | Inactive | Inactive | Active | Inactive | |
| 0.99 | 0.99 | 0.99 | 0.89 | ||
| Mutagenicity | Inactive | Inactive | Inactive | Inactive | |
| 0.72 | 0.65 | 0.76 | 0.71 | ||
| Cytotoxicity | Inactive | Inactive | Inactive | Inactive | |
| 0.80 | 0.74 | 0.70 | 0.73 | ||
| Neurotoxicity | Inactive | Inactive | Inactive | Active | |
| 0.75 | 0.84 | 0.60 | 0.83 | ||
| Nephrotoxicity | Inactive | Active | Active | Inactive | |
| 0.52 | 0.59 | 0.80 | 0.50 | ||
| Cardiotoxicity | Inactive | Inactive | Active | Inactive | |
| 0.74 | 0.54 | 0.60 | 0.52 | ||
| Ecotoxicity | Inactive | Inactive | Inactive | Inactive | |
| 0.76 | 0.81 | 0.66 | 0.58 | ||
| Clinical toxicity | Inactive | Active | Active | Active | |
| 0.57 | 0.55 | 0.65 | 0.86 | ||
| Nutritional toxicity | Inactive | Inactive | Inactive | Inactive | |
| 0.70 | 0.60 | 0.52 | 0.56 | ||
| Heat shock factor response element (HSE) | Inactive | Inactive | Inactive | Inactive | |
| 0.97 | 0.97 | 0.98 | 0.98 | ||
| Mitochondrial membrane potential (MMP) | Inactive | Inactive | Inactive | Inactive | |
| 0.78 | 0.78 | 0.97 | 0.57 | ||
| Phosphoprotein (tumor suppressor) p53 | Inactive | Inactive | Inactive | Inactive | |
| 0.90 | 0.93 | 0.97 | 0.91 | ||
| ADMETLab2.0 | Eye corrosion | −3 | −3 | −3 | −3 |
| Eye irritation | −2 | −3 | −3 | −3 | |
| Respiratory toxicity | +2 | −3 | −3 | −2 | |
| Skin sensitization | −3 | −3 | −3 | −1 | |
| Half life time (t1/2 = h) | 0.669 | 0.154 | 0.835 | 0.311 | |
| Clearance (mL min−1 kg−1) | 1.737 | 0.639 | 0.681 | 8.271 | |
Moreover, our work was extended to study the prediction of additional toxicity items based on ProTox-3.0 – prediction of toxicity of chemicals web tools. The results showed that the most active 6-sulfamoyl-2H-chromene derivatives 2 and 9 exhibited inactive properties for neurotoxicity, cardiotoxicity, ecotoxicity, clinical toxicity, and nutritional toxicity, except for ethyl 4-(2-oxo-6-sulfamoyl-2H-chromene-3-carboxamido)benzoate (9) which showed activity for neurotoxicity and clinical toxicity with probability values of 0.59 and 0.55, respectively. Additionally, Acarbose and Pioglitazone demonstrated safe profiles for ecotoxicity and nutritional toxicity with high probability values. In contrast, Pioglitazone showed active properties for neurotoxicity (P ∼ 0.83) and clinical toxicity (P ∼ 0.86). On the other hand, Acarbose exhibited active properties for nephrotoxicity (P ∼ 0.80), cardiotoxicity (P ∼ 0.60), and clinical toxicity (P ∼ 0.65).
Furthermore, some other important toxicity prediction items and excretion properties such as [half lifetime (t1/2 = h) and clearance (mL min−1 kg−1)] were predicted using ADMETLab2.0 web server (https://admetmesh.scbdd.com/service/evaluation/index last accessed 26/1/2024). The tested derivatives and drugs showed non-corrosive and non-irritant for the eye, non-sensitizer for the skin, and non-respiratory toxic with probability properties ranging from moderate to high safe, except for 3-cyano-2-imino-2H-chromene-6-sulfonamide (2) that demonstrated respiratory toxicity with probability value between 0.7-0.9 indicating moderate risk. The Pioglitazone exhibited the lowest safety profile with non-sensitizer to the skin (probability values ∼ 0.3–0.7) and an alarming pharmacophore related to the thiazole ring. Additionally, all tested compounds featured short half-time values from 0.154 to 0.835 h, as well as low clearance values ranging between 0.639 and 1.737 mL min−1 kg−1, except for Pioglitazone which displayed a moderate clearance value of ∼8.271 mL min−1 kg−1 (Table 4).
The designed 6-sulfamoyl-2H-chromene derivatives and Pioglitazone do not violate the Lipinski rule (RO5), indicating that these derivatives in clinical trials tend to be shorter and, therefore, have a better chance of success. However, Acarbose doesn't obey RO5 due to three violations violations: MW > 500, NorO > 10, NHorOH > 5. Also, 2H-chromene derivatives 2 and Pioglitazone passed with the Veber rule, while 2H-chromene derivatives 9 and Acarbose failed due to TPSA > 140 Å. Additionally, the 6-sulfamoyl-2H-chromene derivatives 2 and 9 exhibited soluble properties with log
S (ESOL) values of −2.06 and 3.46, respectively. On the other hand, they showed highly soluble properties log
S (ESOL) = −2.13, while Pioglitazone showed moderate solubility log
S (ESOL) = −4.31. For synthetic accessibility, the 2H-chromene derivatives (2 and 9) and Pioglitazone exhibited easy synthesis with values of 2.89, 3.21, and 3.46, respectively. Acarbose represented difficult synthetic accessibility with a probability of 7.34. All derivatives demonstrated good bioavailability scores with probability values ranging from 0.17 to 0.55 (Table 5).
| Test items | Most active 6-sulfamoyl-2H-chromene derivatives (2 and 9) and positive controls Acarbose and Pioglitazone | ||||
|---|---|---|---|---|---|
| 2 | 9 | Acarbose | Pioglitazone | ||
| Molecular properties | |||||
| a M. Soluble = moderately soluble; H. Soluble = highly soluble. | |||||
| SwissADME | MLogP | −0.57 | 1.13 | −6.94 | 2.01 |
| TPSA (Å2) | 129.32 | 154.15 | 321.17 | 93.59 | |
| MW | 249.25 | 416.40 | 645.60 | 356.44 | |
| nHBA (NO) | 6 | 8 | 19 | 4 | |
| nHBD (OHNH) | 2 | 2 | 14 | 1 | |
| NRB | 1 | 7 | 9 | 7 | |
| Fraction Csp3 | 0.00 | 0.11 | 0.92 | 0.32 | |
| Drug likeness and medicinal chemistry prediction | |||||
Log S (ESOL) |
−2.06 | 3.46 | −2.13 | −4.31 | |
| Solubility | Soluble | Soluble | H. Soluble | M. Soluble | |
| PAINS | 0 | 0 | 0 | 0 | |
| Lead-likeness | No (1) | No (1) | No (2) | No (2) | |
| Synthetic accessibility | 2.89 | 3.21 | 7.34 | 3.46 | |
| Bioavailability score | 0.55 | 0.55 | 0.17 | 0.55 | |
| Lipinski rule (violation) | Yes (0) | Yes (0) | No (3) | Yes (0) | |
| Veber rule (violation) | Yes (0) | No (1) | No (1) | Yes (0) | |
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| Fig. 3 3D interaction of (A) co-crystallized Acarbose as superimposable (green is the original pose, while turquoise is our pose), (B) compound 2, and (C) compound 9 inside the active site of α-amylase (PDB: 2QV4). | ||
The 3-cyano-2-imino-2H-chromene-6-sulfonamide (2) showed binding energy S = −8.88 kcal mol−1 and interacted with pocket through two sidechain H-bonds acceptor with Tyr151 with nitrogen of cyano group (3.3 Å and strength of 13%) and His201 with nitrogen of imino group at position two of chromene (2.1 Å and strength of 12%). Moreover, the amino acid residue Asp300 located on the sidechain formed H-bond donor with the amino group of sulfonamide moiety with a distance of 2.5 Å and strength of 13% (Fig. 3b). Additionally, this compound exhibited hydrophobic interactions with Glu233, Tyr58, and Tyr62. Meanwhile, the 2-oxo-6-sulfamoyl-2H-chromene-3-carboxamide 9 displayed the highest binding energy S = −9.29 kcal mol−1, confirming the in vitro α-amylase's IC50 = 1.08 ± 0.02 μM. Compound 9 demonstrated two H-bonds interaction with His201 (sidechain acceptor) and Asp300 (sidechain donor) as the interaction of co-crystallized ligands with bond lengths of 2.0 Å and strength of (27 and 32%), respectively. In addition, the compound's center is located over the phenyl ring of Tyr151, exhibiting arene–arene interaction and hydrophobic interaction inside the pocket (Fig. 3c). Moreover, the docking simulation of Chlorpropamide and Glibenclamide, as antidiabetic drugs with a sulphonamide moiety, exhibited higher binding energy than the designed derivatives 2 and 9. Chlorpropamide showed a binding energy of S = −2.99 kcal mol−1, with one hydrogen bond sidechain donor between the residue Asp300 and NH of the sulfonamide group (NH–SO2−), with a bond length of 2.0 Å and a strength of 14% Fig. S1 and S2.† On the other hand, Glibenclamide demonstrated a binding energy of S = −4.98 kcal mol−1 through an arene–arene interaction between the m-chloro phenyl group and Tro59 Fig. S3 and S4 (see ESI for figures).†
O] and the sulfonamide group [–NH–SO2−] in the Glibenclamide exhibited ligand exposure with the pocket. They appeared blue color through the 2D diagram Fig. S7 and S8 (see ESI for figures).†
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| Fig. 4 3D interaction of (A) co-crystallized Acarbose as superimposable (green is the original pose, while turquoise is our pose), (B) compound 2, and (C) compound 9 inside the active site of α-glucosidase (PDB: 3w37). | ||
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| Fig. 5 3D interaction of (A) co-crystallized Ligand as superimposable (green is the original pose, while turquoise is our pose), (B) compound 2, and (C) compound 9, and (D) Pioglitazone inside the active site of PPAR-γ (PDB: 3SZ1). | ||
Furthermore, the most active 6-sulfamoyl-2H-chromene derivatives 2 and 9 showed the lowest binding energy (S = −13.64 and −12.67 kcal mol−1) than Pioglitazone as positive control (−12.43 kcal mol−1). The 3-cyano-2-imino-2H-chromene-6-sulfonamide (2) interacted with PPAR-γ with three hydrogen bond acceptors with residues Lys262 and His266 that interacted with the nitrogen of cyano group with a distance of 2.2 and 2.8 Å, while the third one displayed between the oxygen of sulfonyl group with Arg288 with a bond length of 2.2 Å and strength of 22%. The structure of compound 2 is located inside the pocket and formed hydrophobic interactions with (Leu228, Leu333, Leu340, Glu343, Ser342, Ile341, Phe264, and Gly284) Fig. 5b. Similarly, the 2-oxo-6-sulfamoyl-2H-chromene-3-carboxamide 9 exhibited two hydrogen bonds with residues Lys265 and His266 that bounded to oxygen and amino of sulfonamide (–SO2NH2) with bond lengths of 2.0 and 2.3 Å, respectively Fig. 5c. Finally, the Pioglitazone bounded to the common amino acid residue Ser342 with H-bond sidechain acceptor with the oxygen of carbonyl at C4 of thiadiazol-2,4-dione with bond length of 2.8 Å and strength of 43%. Besides, the Arg288 could interact with phenyl ring of Pioglitazone through arene–cation interaction Fig. 5d. For Chlorpropamide and Glibenclamide, it was found that the binding energy of these antidiabetic sulfonamide drugs exhibited binding energy S = −4.44 and −7.81 kcal mol−1, respectively. Chlorpropamide displayed one hydrogen bond backbone acceptor between the residue Ser289 and oxygen of SO2 with a bond length of 2.2 Å and strength of 38% Fig. S9 and S10.† On the other hand, Glibenclamide showed one hydrogen bond sidechain donor between the residue Ser289 and NH of sulfonamide with a bond length of 2.7 Å and strength of 32% Fig. S11 and S12 (see ESI figures).†
Finally, it can be concluded that the most active 6-sulfamoyl-2H-chromene derivatives 2 and 9 showed lower binding energy than Chlorpropamide and Glibenclamide as antidiabetic drugs have sulphonamide moiety against α-amylase, α-glucosidase, and PPAR-γ enzymes.
NH), 1592 (C
C), 1399, 1185 (SO2); 1H NMR (δ, ppm) = 7.32 (d, J = 8.8 Hz, 1H, H8-phenyl), 7.86 (dd, J = 8.4, 4.0 Hz, 1H, H7-phenyl), 8.10 (s, 2H, NH2), 8.39 (s, 1H, H5-phenyl), 8.76 (s, 1H, H4-pyran), 9.39 (s, 1H, NH); 13C NMR (ppm) δ 96.01 (C–CN, C3-pyran), 111.45 (C4-pyran), 116.21 (CN), 118.25 (C-sp2), 122.61(C-sp2), 127.71(C-sp2), 131.91(C-sp2), 138.12 (C–SO2), 157.90 (O–C
C), 160.53 (C
NH).
NH), 1568 (C
C), 1400, 1185 (SO2); 1H NMR (δ, ppm) = 4.99 (s, 2H, NH2), 6.94 (d, J = 8.0 Hz, 1H, H8-phenyl), 7.40 (d, J = 8.4 Hz, 1H, H7-phenyl), 7.53 (br.s, 2H, NH2), 7.66 (s, 1H, H5-phenyl), 7.95 (s, 1H, H4-pyran), 8.07 (s, 1H, NH); 13C NMR (ppm) δ 52.65 (C-(CN)2), 113.48 (CN), 118.25 (C4-pyran), 122.61 (C-sp2), 127.71 (C-sp2), 131.91 (C-sp2), 136.68 (C-sp2), 138.12 (C-sp2), 140.05 (C–SO2), 156.69 (O–C
C), 160.08 (C
NH), 178.95 (NH2–C
C).
C), 1367, 1270 (SO2); 1H NMR (δ, ppm) = 2.31 (s, 3H, COCH3), 6.70 (br.s, 2H, NH2), 7.33 (d, J = 8.8 Hz, 1H, H8-phenyl), 7.87 (d, J = 8.4 Hz, 1H, H7-phenyl), 8.40 (s, 1H, H5-phenyl), 8.74 (s, 1H, H4-pyran); 13C NMR (ppm) δ 25.90 (CO–CH3), 119.54 (C-sp2), 119.91 (C-sp2), 122.06 (C-sp2), 127.30 (C-sp2), 131.65 (C-sp2), 138.55 (C-sp2), 144.90 (C–SO2), 157.46 (O–C
C), 161.15 (C
O), 183.43 (CO–CH3).
C), 1366, 1180 (SO2); 1H NMR (δ, ppm) = 1.29 (t, J = 6.0 Hz, 3H, CH3CH2O-), 4.27 (q, J = 5.6 Hz, 2H, CH3CH2O-), 6.78 (s, 2H, NH2), 7.61 (d, J = 7.2 Hz, 1H, H8-phenyl), 7.92 (d, J = 7.2 Hz, 1H, H7-phenyl), 8.40 (s, 1H, H5-phenyl), 8.96 (s, 1H, H4-pyran); 13C NMR (ppm) δ 13.99 (CH3CH2O-), 60.58 (CH3CH2O-), 118.26 (C-sp2), 122.61 (C-sp2), 125.61 (C-sp2), 127.71 (C-sp2), 131.91 (C-sp2), 138.12 (C-sp2), 140.33 (C–SO2), 156.58 (O–C
C), 161.62 (C
O), 168.14 (CO–OEt).
C), 1359, 1191 (SO2); 1H NMR (δ, ppm) = 6.90 (s, 2H, NH2), 7.21 (d, J = 8.4 Hz, 2H, Ar–H), 7.69 (d, J = 9.2 Hz, 1H, H8-phenyl), 7.72 (d, J = 8.8 Hz, 2H, Ar–H), 7.76 (d, J = 8.4 Hz, 1H, H7-phenyl), 8.34 (s, 1H, H5-phenyl), 8.43 (s, 1H, H4-pyran), 10.46 (s, 1H, CO–NH); 13C NMR (ppm) δ 115.30 (C-sp2), 121.49 (C-sp2), 124.45 (C-sp2), 126.66 (C-sp2), 127.33 (C-sp2), 128.56 (C-sp2), 129.43 (C-sp2), 129.74 (C-sp2), 130.60 (C-sp2), 134.71 (C-sp2), 146.68 (C-sp2), 152.44 (C–SO2), 156.92 (O–C
C), 161.85 (C–F), 162.61 (C
O), 166.15 (CO–NH); 19F NMR (376 MHz, DMSO) δ −118.03 (s, 1F).
C), 1360, 1191 (SO2); 1H NMR (δ, ppm) = 6.73 (s, 2H, NH2), 7.23 (d, J = 6.8 Hz, 1H, Ar–H), 7.29–7.32 (m, 2H, Ar–H + H8-phenyl), 7.48 (d, J = 6.8 Hz, 1H, Ar–H), 7.79 (d, J = 6.8 Hz, 1H, H7-phenyl), 7.83–7.87 (m, 1H, Ar–H), 8.18 (s, 1H, H5-phenyl), 8.36 (s, 1H, H4-pyran), 9.37 (s, 1H, CO–NH); 13C NMR (ppm) δ 111.70 (C-sp2), 115.34 (C-sp2), 115.62 (C-sp2), 118.63 (C-sp2), 119.07 (C-sp2), 121.37 (C-sp2), 123.20 (C-sp2), 124.25 (C–F3), 125.82 (C-sp2), 127.49 (C-sp2), 129.64 (C-sp2), 133.33 (C-sp2), 136.44 (C-sp2), 144.24 (C–SO2), 155.30 (O–C
C), 159.38 (C
O), 164.34 (CO–NH); 19F NMR (376 MHz, DMSO) δ/ppm −61.29 (s, 3F).
C), 1380, 1137 (SO2); 1H NMR (δ, ppm) = 6.72 (s, 2H, NH2), 7.32 (d, J = 8.8 Hz, 2H, Ar–H), 7.51 (d, J = 8.4 Hz, 1H, H8-phenyl), 7.81 (d, J = 10.4 Hz, 1H, Ar–H), 7.86 (d, J = 6.4 Hz, 1H, Ar–H), 7.98 (d, J = 8.8 Hz, 1H, H7-phenyl), 8.10 (s, 1H, H5-phenyl), 8.39 (s, 1H, H4-pyran), 9.38 (s, 1H, CO–NH); 13C NMR (ppm) δ 114.19 (C-sp2), 116.83 (C-sp2), 117.77 (C-sp2), 118.61 (C-sp2), 119.57 (C-sp2), 122.40 (C-sp2), 126.33 (C-sp2), 128.50 (C-sp2), 130.57 (C-sp2), 131.16 (C-sp2), 133.84 (C-sp2), 134.88 (C-sp2), 142.41 (C–SO2), 153.98 (O–C
C), 159.44 (C
O), 164.09 (CO–NH).
C), 1361, 1192 (SO2); 1H NMR (δ, ppm) = 1.24 (t, J = 7.2 Hz, 3H, CH3CH2O-), 4.18 (q, J = 5.6 Hz, 2H, CH3CH2O-), 5.91 (s, 2H, NH2), 6.53 (d, J = 8.4 Hz, 2H, Ar–H), 6.92 (d, J = 6.4 Hz, 1H, H8-phenyl), 7.51 (d, J = 6.8 Hz, 1H, H7-phenyl), 7.60 (d, J = 6.8 Hz, 2H, Ar–H), 7.86 (s, 1H, H5-phenyl), 7.99 (s, 1H, H4-pyran), 10.23 (s, 1H, CO–NH); 13C NMR (ppm) δ 14.76 (CH3CH2O-), 61.03 (CH3CH2O-), 115.07 (C-sp2), 115.52 (C-sp2), 116.76 (C-sp2), 120.77 (C-sp2), 124.50 (C-sp2), 127.35 (C-sp2), 128.87 (C-sp2), 130.59 (C-sp2), 132.14 (C-sp2), 134.05 (C-sp2), 138.30 (C-sp2), 140.18 (C-sp2), 144.61 (C–SO2), 155.12 (O–C
C), 157.58 (C
O), 163.46 (CO–NH), 166.20 (CO–OEt).
Footnote |
| † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ra02143f |
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