Open Access Article
Asmae
Ben Abdelhadi
ab,
Sara
Rodríguez-Sánchez
c,
Rachid
Ouarsal
a,
Mohamed
Saadi
d,
Lahcen
El Ammari
d,
Nicola
Morley
e,
Brahim
El Bali
f,
Óscar
Gómez-Torres
g,
Mohammed
Lachkar
*a and
Abderrazzak
Douhal
*b
aEngineering Laboratory of Organometallic, Molecular Materials, and Environment (LIMOME), Faculty of Sciences, Sidi Mohamed Ben Abdellah University, 30000 Fez, Morocco. E-mail: mohammed.lachkar@usmba.ac.ma
bDepartamento de Química Física, Facultad de Ciencias Ambientales y Bioquímica, y INAMOL, Campus Tecnológico de Toledo, Universidad de Castilla-La Mancha (UCLM), Avenida Carlos III, S.N., 45071 Toledo, Spain. E-mail: abderrazzak.douhal@uclm.es
cDepartamento de Química Analítica y Tecnología de los Alimentos, Facultad de Ciencias Ambientales y Bioquímica, Universidad de Castilla-La Mancha, Toledo, Spain
dLaboratoire de Chimie Appliquée des Matériaux, Centre des Sciences des Matériaux, Faculty of Science, Mohammed V University in Rabat, Avenue Ibn Battouta, BP 1014, Rabat, Morocco
eDepartment of Materials Science and Engineering, University of Sheffield, Sheffield S1 3JD, UK
fIndependent Scientist, Marrakech, Morocco
gFacultad de Ciencias Ambientales y Bioquímica, Universidad de Castilla-La Mancha, Toledo, Spain
First published on 15th February 2024
A novel iron(III) complex (CH3)2NH2[Fe(phen)Cl4] (1) (phen = 1,10-phenanthroline) was synthesized, its structure was fully characterized using different techniques, and its in vitro antibacterial activity against various antibiotic-resistant Gram-positive and Gram-negative bacteria was evaluated. The structure of 1 is made up of mononuclear [Fe(phen)Cl4]− anions and dimethylammonium cations (CH3)2NH2+. Iron(III) is hexacoordinated to two nitrogen atoms of chelating phenanthroline and four chlorides forming a distorted octahedral environment around the metal atom. Complex 1 crystallizes in a triclinic system with the P
space group. 3D Hirshfeld surfaces and 2D fingerprint plots show that H⋯Cl interactions are the major contributors in maintaining the total surface. IR and UV-visible spectra indicated the coordination of 1,10-phenanthroline to iron (III) metal. Thermal stability experiments revealed that 1 is stable up to 428 K. Magnetic susceptibility measurements indicated a paramagnetic behavior at high temperatures. In vitro antibacterial activity was explored against two Gram-positive bacteria, Staphylococcus aureus CECT 86 and Listeria monocytogenes CECT 4031, and two Gram-negative bacteria, Escherichia coli CECT 99 and Klebsiella pneumoniae CECT 143T, using the disc diffusion method. Complex 1 clearly showed good activity against these bacteria and is a potential candidate for treating bacterial infections and promoting further development in their treatment.
Research concerning the coordination chemistry of Fe(III) has intensified in recent years considering its important role in several chemical and biological systems.34–37 Structural models for the active sites of various iron-containing enzymes have added a wealth of knowledge to our understanding of various aspects of iron chemistry with respect to structural, electrochemical, and magnetic properties.38,39 The products formed by the reaction of iron(III) chloride with 1,10-phenanthroline as a bidentate nitrogen donor have been widely studied.40–45 However, only a few of the resulting compounds such as [FeCl3(phen)X] (X = CH3OH, H2O, or Cl),46 [Fe(phen)Cl3(DMSO)],47 [Fe(phen)2Cl2]NO348 and [Fe(phen)Cl3(CH3OH)]·CH3OH44 have been fully characterized. Herein, we report a novel iron(III) complex with the formula (CH3)2NH2[Fe(phen)Cl4], termed as 1, along with its structural characterization as well as spectroscopic, thermal and magnetic properties. Its in vitro antibacterial activity was explored and demonstrated against two Gram-positive (Staphylococcus (S.) aureus CECT 86 and Listeria (L.) monocytogenes CECT 4031) and two Gram-negative (Escherichia (E.) coli CECT 99 and Klebsiella (K.) pneumoniae CECT 143T) bacteria using the disc diffusion method.
:
2 (v
:
v) ratio was used as the solvent. 10 mL of this solvent mixture was taken in a 150 mL reaction flask and 0.145 g (0.802 mmol) of 1,10-phenanthroline hydrochloride monohydrate was added to it. To this mixture, 0.13 g (0.802 mmol) of FeCl3·6H2O dissolved in 8 mL of DMF was added dropwise. A mixture of orange colour was formed and vigorously stirred for 3 hours at 60 °C. This solution was left to slowly evaporate at room temperature. After 3 days, orange prismatic crystals were formed and isolated. The yield of the reaction was 76%. The theoretical contents of C, H, N and Fe in C14H16Cl4FeN3 were calculated to be 39.7, 3.8, 9.9 and 13.2%, respectively. Experimental elemental analysis showed that the contents of C, H, N and Fe in 1 were 42.6, 3.7, 9.8 and 15%, respectively.
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| Fig. 1 Experimental (black line) and simulated (red line) X-ray diffraction patterns of (CH3)2NH2[Fe(phen)Cl4]. | ||
Complex 1 dissolves well in water and in polar solutions such as methanol, N,N-dimethylformamide (DMF) and dimethylsulfoxide (DMSO) forming a yellow-to-orange solution (Fig. S1, ESI†). The complex is stable in air at room temperature.
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| Fig. 2 Molecular structure of 1 with the atom-numbering scheme and 50% probability displacement ellipsoids. | ||
Fe(III) is hexacoordinated and its metal-coordinated-atom (N, Cl) distances and angles in the resulting distorted octahedron are of the same magnitudes as those measured in known complexes (Table S3, ESI†).47,51,52 Fe–Cl bond distances are quite comparable and vary from 2.3114 (3) to 2.4447 (3) Å. Meanwhile, Fe–N bond lengths are in the range 2.1835 (7)–2.1856 (7) Å. These distances are comparable to those previously reported for hexacoordinated Fe(III) (with two chlorides in equatorial positions, two chlorides in axial positions and two nitrogen atoms from the phenanthroline ligand) in the other iron-based complex.51,52
A two-dimensional layered structural system is formed by the interaction between the [Fe(phen)Cl4]− anion and the uncoordinated (CH3)2NH2+ cation (Fig. 3). The presence of the free dimethylammonium cation in the complex results in extensive H-bond interactions, which involve both H-atoms bonded to the nitrogen one in the dimethylammonium cation, and a neutral infinite chain nearly parallel with [100] is formed (Fig. 3 and Table 1).
| D–H⋯A | D–H | H⋯A | D⋯A | D–H⋯A |
|---|---|---|---|---|
| Symmetry code: (i) −x + 2, −y + 1, −z. | ||||
| N3–H3A⋯Cl1i | 0.89 | 2.60 | 3.2561 (9) | 131 |
| N3–H3A⋯Cl4i | 0.89 | 2.66 | 3.3435 (10) | 135 |
| N3–H3B⋯Cl1 | 0.89 | 2.44 | 3.2222 (10) | 147 |
Table 1 represents the values of the geometrical characteristic parameters of H-bonds in the crystal. Two molecules of the complex and two dimethylammonium cations are present in a one-unit cell. The two 1,10-phenanthroline rings bonded to different iron atoms oriented in opposite directions are in different planes. Moreover, a π–π interaction between the ring (C4–C9) and its inversion symmetry located on the adjacent layer consolidates the cohesion of the molecules in the crystal. The distance between their two centroids is 3.5737(7) Å. The 1,10-phenanthroline ring is almost planar with maximum deviation from the mean plan of −0.070(1) Å at C3. Dimethylammonium cations are inserted between the two layers. Fig. 4 shows that the distance between the two iron atoms belonging to the same layer is 7.709 Å, while that between the iron atoms located in the parallel layers stacking along the [100] direction is 8.427 Å.
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| Fig. 4 A three-dimensional view of the structure of 1 showing the stacking of the layers and the distances between the iron atoms. | ||
![]() | (1) |
The three-dimensional Hirshfeld surface of (CH3)2NH2[Fe(phen)Cl4] was generated using CrystalExplorer 3.1. T visualization of the three-dimensional Hirshfeld surfaces prepared by mapping the standard (high) surface resolution dnorm, de, di, curvedness, and shape index on the asymmetric unit of 1 are shown in Fig. 5. The blue patches around the dnorm surface are attributed to ring atoms of the molecules inside the surface, and the red ones confirm the presence of non-covalent interactions. These are mainly constituted of N–H⋯Cl and correspond to three interactions involving the chlorine atom in the N3–H3A⋯Cl1i, N3–H3A⋯Cl4i and N3–H3B⋯Cl1 H-bonds (Table 1).
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| Fig. 5 Hirshfeld surface analysis of (CH3)2NH2[Fe(phen)Cl4] mapped with: (a) dnorm, (b) de, (c) di, (d) curvedness, and (e) shape-index. | ||
The associated fingerprint plots of (CH3)2NH2[Fe(phen)Cl4] are depicted separately in (Fig. S2(a)–(f), ESI†) showing the contributions of different intermolecular interactions on the Hirshfeld surface. The weak intermolecular interactions in the crystal mainly involve H⋯Cl and H⋯H bonds. It is clear that the highest contribution of the total Hirshfeld surface is attributed to the H⋯Cl/Cl⋯H bonds (Fig. S2b, ESI†). These appear as two sharp peaks on fingerprint plots with a prominent long peak at ((de + di) ∼ 2.5 Å), with a total Hirshfeld surface of 48.3%. There are indeed three N–H⋯Cl H-bonds in the crystal structure (Table 1). These bonds are electrostatically very favourable due to the partial charges with the opposite charge of chlorine and H atoms. The second most frequent interactions are H⋯H bonds (Fig. S2c, ESI†) due to the abundance of hydrogen atoms on the molecular surface with no significant effects on the stabilization of the structure. It is important to note that these interactions appear in the middle of the scattered points in the two-dimensional fingerprint map and represent 31.2% of the total HS areas. Furthermore, C⋯H/H⋯C bonds (Fig. S2d, ESI†) show the presence of the pair of distinct wings at ((de + di) ∼ 2.4 Å) in the 2D fingerprint plot and represent only 11.4%. Other interactions, contribute less to the Hirshfeld surfaces; N⋯H (1.3%), Cl⋯Cl (0.3%) and N⋯C/C⋯N (0.1%). These results reveal the significance of these interactions in the packing arrangement of the crystal structure.
C) and (C
N) stretching vibrations, respectively, of phenanthroline groups.55,56 The bands at 1517 and 1425 cm−1 for the 1 complex are shifted to higher frequencies from their positions for the free 1,10-phenanthroline ligands (1507 and 1420 cm−1), indicating the participation of the nitrogen atom of the phenanthroline ring groups in coordination to the metal ion.57,58 Moreover, the two peaks located at 848 and 722 cm−1 are assigned to ν(C−H) phenyl and pyridine rings, respectively, of the coordinated phenanthroline ligands.59 Therefore, the band at 424 cm−1 could belong to ν(Fe–N) stretching vibrations. Finally, the bands in the 1250–600 cm−1 region are probably due to the C–H in-plane or out-of-plane bend, ring breathing, and ring deformation absorption of 1,10-phenanthroline.
The UV-visible absorption spectra of 1 in different solvents (DMF, MeOH, EtOH and water) were recorded to characterize main transition bands in solutions (Fig. 7). A light-yellow colour of the solutions was seen in EtOH and DMF containing 1, while an intense yellow to orange colour was seen in MeOH and water solvents. In the spectrum, the n → π* and π → π* charge transfer transitions of the phenanthroline ligand shift from 260–270 nm in the free ligand to 270–280 nm in iron (III) complex ions (285 nm for MeOH and water; and 275–280 nm for EtOH and DMF). The presence of the two absorption bands in the complex at 315–330 nm and 360–370 nm indicates the occurrence of a ligand-to-metal charge transfer event in 1. The observed shift in the π → π* charge-transfer in this kind of complex has been previously reported and it reflects the coordination of the phenanthroline chelate ligand to the metal iron(III).41,60 Finally, a very weak absorption band at 508 nm, which can be attributed to weak transitions in the six-coordinated high spin octahedral configuration around the Fe (III) ion, was observed.28
![]() | (2) |
| μeff = g[S(S + 1)]1/2µB | (3) |
The obtained experimental value of μeff (6.1 µB) is found to be slightly higher than the theoretical spin-only value for Fe3+ (5.92 µB). This is in line with other similar research on six-coordinated iron(III) systems and consistent with the presence of five unpaired electrons.63 Thus, the paramagnetic nature of the compound at 150 K also confirms the Fe3+ oxidation state in the (CH3)2NH2[Fe(phen)Cl4] complex.
| Inhibition zone diameter/mm | ||||
|---|---|---|---|---|
| S. aureus CECT 86 | L. monocytogenes CECT 4031 | E. coli CECT 99 | K. pneumoniae CECT 143T | |
| Disc diffusion method | 14.5 | 15.5 | 17.0 | 17.5 |
| Ciprofloxacin disc (5 µg) | 26.5 | No halo | 28.0 | 27.3 |
| Chloramphenicol disc (30 µg) | 20 | 19.5 | 19.3 | 18.8 |
It is clear that the values of the diameter of the inhibition zone for 1 are higher for Gram-negative bacteria. The comparison of the values obtained with complex 1 discs with those obtained with ciprofloxacin and chloramphenicol discs shows that complex 1 has lower antimicrobial activity against all the four bacteria assayed using the two drugs except for L. monocytogenes tested using ciprofloxacin, for which no inhibition zone was observed. This interestingly indicates that this bacterium is resistant to this antibiotic but sensitive to complex 1.
Results from the assay to determine the MIC of complex 1 indicate that it was able to inhibit the growth of each of the four bacteria, as shown in Fig. 10. Remarkably, 1 exhibits antibacterial activity against both Gram-positive and Gram-negative bacteria, with some differences in the activities. As shown in Fig. 10, all the assayed concentrations were able to inhibit the growth of the bacteria, at least partially, and the decrease of growth increases with the concentration of 1. However, for L. monocytogenes CECT 4031, the percentage of decrease varies between 78.4% and 89.4% for 300 and 1000 µg mL−1, respectively; for E. coli CECT 99, it varies between 17.3% and 93.8% (Fig. S4, ESI†). Based on these results, 1 could be used even to the lowest concentration assayed to inhibit L. monocytogenes CECT 4031 growth. For S. aureus CECT 86, we observed that using concentrations of 1 higher than 800 µg mL−1 did not produce a significant increase in the inhibition of growth, reaching a value of 95.7%. Values for K. pneumoniae CECT 143T were the lowest with a decrease of growth of 61.6% at the highest concentration of complex 1 assayed (1000 µg mL−1). This value is very far from that of the MIC, and a higher concentration of 1 would be necessary to reach 100% inhibition of growth. At higher concentrations of 1, the percentages of decrease of growth are slightly more effective against S. aureus, followed by E. coli and L. monocytogenes.
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| Fig. 10 In vitro antimicrobial activity of (CH3)2NH2[Fe(phen)Cl4] against two Gram-negative and two Gram-positive bacteria. | ||
Two iron(III) complexes, [Fe(L1)(L2)(H2O)]Cl3 and [Fe(L1)(L2)(L3)(H2O)]Cl3 where L1 = 1,10-phenanthroline (C12H8N2), L2 = 2,2′-bipyridine (C10H8N2) and L3 = acetamide (C2H5NO), completely inhibited the growth of both the Gram-positive and Gram-negative bacteria at lower concentrations.64
A comparative study of these results with Fe(II) complexes reported in the literature reveals that Fe(II) complexes with acyclic chelating ligands show low or virtually no antibacterial activity against the tested Gram-negative and Gram-positive bacteria.9,65,66
The reason for the difference in the effectiveness of the tested complexes can be related to the differences in the degree of penetration and interference of the sample with the bacterial cell wall. This is based on different factors such as cell membrane and cell permeability, and such discrepancies in the activities of various strains of bacteria might be due to the difference in the complexity of the cell wall structure of these bacterial strains the effect of the iron (III) ion on normal cell processes as explained by Tweedy's chelation theory67 and the overtone concept.68
Footnote |
| † Electronic supplementary information (ESI) available. CCDC 2281265. For ESI and crystallographic data in CIF or other electronic format see DOI: https://doi.org/10.1039/d3ma00971h |
| This journal is © The Royal Society of Chemistry 2024 |