Tao
Lu
ab,
Fan
Xie‡
a,
Nathan A.
Seifert
ac,
Reihaneh
Hamidi Mejlej
a,
Wolfgang
Jäger
a and
Yunjie
Xu
*a
aDepartment of Chemistry, University of Alberta, 11227 Saskatchewan Drive, Edmonton, AB, Canada. E-mail: yunjie.xu@ualberta.ca
bKey Laboratory of Biology and Medical Engineering, School of Biology and Engineering, Guizhou Medical University, Guiyang 550025, China
cChemistry and Chemical & Biomedical Engineering Department, University of New Haven, 300 Boston Post Rd, West Haven, CT 06516, USA
First published on 5th March 2024
The complex conformational panorama of binary 4,4,4-trifluoro-1-butanol (TFB) aggregates was investigated using chirped-pulse Fourier transform microwave spectroscopy, aided by conformational searches using CREST (Conformer-Rotamer Ensemble Sampling Tool) and quantum chemistry calculations. From nearly 1500 initial dimer geometries, 16 most stable binary candidates were obtained within a relative energy window of ∼4 kJ mol−1. Rotational spectra of five binary conformers were experimentally observed in supersonic expansion and assigned. Interestingly, three out of the five observed binary conformers are composed solely of monomer conformers, which were not observed in their isolated gas phase forms in jet expansion. In addition, an observed dimer that is made exclusively of the most stable TFB monomer subunits does not correspond to the global minimum. The intricate kinetically and thermodynamically controlled dimer formation mechanisms are discussed, and a modified kinetic-thermodynamic model was developed, providing conformational abundances that are in good agreement with the experiment. Subsequent non-covalent interaction analyses reveal that the observed conformers are held together by one primary O–H⋯O hydrogen bond and secondary intermolecular C–H⋯O, C–H⋯F, and/or O–H⋯F interactions, as well as C–H⋯H–C London dispersion interactions between the methylene groups. Further symmetry-adapted perturbation theory analyses of the TFB dimer conformers and related alcohol dimers reveal a considerable rise in dispersion contributions with increasing n-alkyl carbon chain length and highlight the role of dispersion interactions in preferentially stabilizing the global minimum of the TFB dimer.
In recent years, chirped-pulse (CP)–Fourier transform (FT) microwave (MW) spectroscopy, has emerged as a powerful spectroscopic technique to provide very detailed, often decisive information about structures, energetics and internal dynamics of small, non-covalently bonded clusters.12,13 In this work, we focus on using CP-FTMW spectroscopy of binary aggregates of 4,4,4-trifluoro-1-butanol (TFB). TFB serves widely as an important intermediate in liquid crystal, organic semiconductor and pharmaceutical productions.14 As the n-alkyl carbon chain length increases, alcohol molecules become much more flexible, resulting in more intricate conformational landscapes. For instance, while TFE has only two rotational spectroscopically distinguishable monomer conformers, TFB has fourteen including thirteen enantiomeric pairs.15 Therefore one can anticipate a considerably more complicated conformational landscape of the TFB dimer, compared to the aforementioned alcohol dimers. By using a combination of experimental CP-FTMW data and theoretical calculations, we aim to explore the conformational diversity in the TFB dimer and evaluate the influence of dispersion interactions associated with the n-alkyl carbon chain on the energy ordering of binary conformers. In addition, we aim to develop a modified kinetic–thermodynamic model to explain the observation and non-observation of certain low energy conformers of alcohol dimers in jet expansion, offering a comprehensive connection between experimental abundances and theoretical relative energies. Furthermore, we compare the relative electrostatic, induction, dispersion and exchange-repulsion contributions to the intermolecular interactions among a range of n-alkyl alcohol dimers to appreciate the importance of dispersion interactions in the current system.
The quantum theory of atoms in molecules (QTAIM)30 and the NCI approaches31 were employed to characterize and visualize the intra- and intermolecular interactions occurring in the binary TFB conformers by means of the Multiwfn32 and VMD33 programs. Symmetry-adapted perturbation theory (SAPT) analyses34 at the SAPT2+(3)/aug-cc-pVDZ level of theory were conducted to decompose the total interaction energies of the TFB dimer and other related alcohol dimers into electrostatic, induction, dispersion and exchange-repulsion components using the PSI4 program.35
Without considering more subtle differences in the secondary non-covalent interactions and assuming that binary TFB conformers are connected through an intermolecular O–H⋯O hydrogen bond, one can expect 677 dimer conformers, i.e., 2 × (switch the role of proton donor and acceptor) × (13 (with TTt) + 13 × 24 (with the remaining enantiomeric pairs)) + 1 (TTt dimer) + 13 × 2 (with themselves). Here one counts a pair of mirror-imaged binary conformations as one conformer as their rotational spectra are the same. If one further considers that the proton donor can either bind to the left- or right-hand lone pair of the O atom of the proton acceptor or how the extended n-alkyl carbon chains of the two subunits interact with each other, the number of potential binary conformations increases greatly. It is therefore essential to enlist the assistance of CREST in identifying all low-energy dimer candidates. The subsequent DFT calculations resulted in 102 stable TFB dimer conformers within a relative energy span of 10 kJ mol−1 at the B3LYP-D3BJ/def2-TZVP level. Each conformer is named with a Roman numeral, which indicates its ΔE0 ranking with I being the most stable, and with the monomer identification of its proton donor and acceptor, for example, I(TG−g−/TG+g+). Geometries of the 16 most stable conformers within a narrow, relative energy window of ∼4 kJ mol−1 are shown in Fig. 1, while their energetic and spectroscopic properties are given in Table 1, and the energetic and spectroscopic parameters of the 102 conformers are collated in Table S1, (ESI†).
Conformers | Familyb | ΔE | ΔE0 | A | B | C | |μa| | |μb| | |μc| |
---|---|---|---|---|---|---|---|---|---|
a ΔE andΔE0 denote the raw and ZPE corrected relative energies (in kJ mol−1), respectively, and A, B, and C are the rotational constants (in MHz). |μg| (g = a, b, c) are the magnitudes of the electric dipole moment components (in Debye). b Each family label consists of the names of the two monomer subunits. Please see the discussions presented in the section titled “Rationale for the (non)-observation of the low energy TFB dimer conformers”. | |||||||||
I(TG−g−/TG+g+) | (TG,TG) | 0.0 | 0.0 | 0.565 | 0.299 | 0.272 | 1.1 | 1.8 | 1.3 |
II(TG+g+/TG+g+) | (TG,TG) | 2.2 | 1.2 | 0.539 | 0.281 | 0.234 | 0.5 | 3.4 | 2.0 |
III(G−G−g+/TG−g−) | (TG,GG) | 1.6 | 1.6 | 0.608 | 0.280 | 0.269 | 0.5 | 1.2 | 1.1 |
IV(TG−g−/TG+t) | (TG,TG) | 3.2 | 1.8 | 0.512 | 0.320 | 0.257 | 0.9 | 5.0 | 2.1 |
V(TG+t/TG+t) | (TG,TG) | 4.2 | 2.4 | 0.636 | 0.247 | 0.196 | 6.7 | 3.3 | 0.2 |
VI(TG−g−/TG+g+) | (TG,TG) | 3.8 | 2.6 | 0.555 | 0.249 | 0.202 | 0.1 | 2.9 | 0.5 |
VII(TG−g−/G−G−t) | (TG,GG) | 3.1 | 2.8 | 0.614 | 0.302 | 0.265 | 0.1 | 2.2 | 0.9 |
VIII(TG−g−/G+G+g−) | (TG,GG) | 2.7 | 2.8 | 0.823 | 0.199 | 0.180 | 0.0 | 0.9 | 0.0 |
IX(TG−g−/G−G−g+) | (TG,GG) | 2.8 | 3.0 | 0.604 | 0.323 | 0.263 | 0.4 | 2.5 | 0.1 |
X(G+G+g−/G−G−t) | (GG,GG) | 2.8 | 3.0 | 0.679 | 0.268 | 0.264 | 0.3 | 0.6 | 1.3 |
XI(TG−g−/TG−t) | (TG,TG) | 4.8 | 3.4 | 0.763 | 0.195 | 0.186 | 2.4 | 1.1 | 1.4 |
XII(G+G+g−/TG−g−) | (TG,GG) | 3.5 | 3.5 | 0.788 | 0.206 | 0.195 | 1.4 | 1.7 | 1.0 |
XIII(TG−g−/TTg−) | (TG,TT) | 4.5 | 3.6 | 0.515 | 0.312 | 0.233 | 0.7 | 3.0 | 2.0 |
XIV(G+G+t/TG−g−) | (TG,GG) | 4.7 | 3.6 | 0.567 | 0.290 | 0.243 | 0.0 | 3.1 | 0.9 |
XV(TG−g−/G−G−t) | (TG,GG) | 2.9 | 3.6 | 0.818 | 0.230 | 0.216 | 0.7 | 1.2 | 0.2 |
XVI(TG−g−/G−G−g+) | (TG,GG) | 4.9 | 3.8 | 0.604 | 0.252 | 0.204 | 0.4 | 0.7 | 0.3 |
For comparison, additional calculations for these 16 conformers were also carried out at the B3LYP-D3BJ/6-311++G(2d,p), B2PLYP-D3BJ/def2-TZVP, B2PLYP-D3BJ/6-311++G(2d,p), and MP2/6-311++G(2d,p) levels of theory, and the results are collated in Tables S2–S5 in the ESI.† Although some minor switches in the energy ordering were observed, similar to that reported in the case of cyclohexanol dimer,2 the general relative energy trend remains.
Parameter | I(TG−g−/TG+g+) | II(TG+g+/TG+g+) | IV(TG−g−/TG+t) | V(TG+t/TG+t) | XIII(TG−g−/TTg−) |
---|---|---|---|---|---|
a Errors in parentheses are expressed in units of the least significant digit. b Relative magnitudes of the three experimental dipole moment components. c σ is the standard deviation of the fit. d N is the number of rotational transitions included in the fit. | |||||
A (MHz) | 564.70358(5)a | 543.64824(7) | 515.73096(3) | 634.88225(7) | 517.9661(2) |
B (MHz) | 293.04485(5) | 271.46605(4) | 313.29220(3) | 242.50349(2) | 305.1570(1) |
C (MHz) | 266.28527(5) | 227.56674(4) | 250.91942(3) | 192.84574(2) | 229.22660(8) |
D K (kHz) | 0.2956(8) | 0.2825(7) | 0.2293(2) | 0.294(2) | 0.334(3) |
D JK (kHz) | −0.3025(8) | −0.1962(7) | −0.2289(2) | 0.0171(2) | −0.356(4) |
D J (kHz) | 0.1325(2) | 0.0849(1) | 0.1260(1) | 0.05079(5) | 0.1848(9) |
d 1 (kHz) | 0.060(5) | 0.058(2) | 0.1127(3) | 0.0645(5) | 0.018(3) |
d 2 (Hz) | 22.9(1) | 20.87(8) | 43.63(3) | 11.22(2) | 49.7(4) |
μ a/μb/μcb (D) | μ b ≫ μa ≈ μa | μ b > μ c ≫ μa | μ b ≫ μc > μa | μ a >μ b, no μc | μ b > μ c ≫ μa |
σ (kHz) | 3.2 | 3.8 | 2.8 | 2.3 | 3.7 |
N | 373 | 355 | 510 | 381 | 145 |
Utilizing a Python routine, the best agreement between the simulated and experimental intensities was achieved at a rotational temperature of ∼1 K where the simulated Pgopher line intensities were calculated using the theoretical dipole moment components and the experimental spectroscopic constants with a rotational temperature step size of 0.1 K. Note that the intensities of all the experimental transition lines with signal-to-noise better than 5 in the 3.4–4.6 GHz range were used. The experimental relative abundances of the five observed conformers, I:
II
:
IV
:
V
:
XIII, were estimated to be about 9
:
3
:
3
:
1
:
1 in the supersonic jet expansion. An overview of the experimental broadband rotational spectrum and the simulated spectra of the five observed TFB dimer conformers is displayed in Fig. 2.
Comparisons of the experimental rotational constants with those calculated at five different levels of theory are summarized in Table S11, ESI† and graphically presented in Fig. S1, ESI,† where the B2PLYP-D3BJ/def2-TZVP level of theory offers the best agreement with a maximum deviation of <1.6%.
In the case of TFB, the three experimentally observed TFB monomer conformers in a jet expansion are TG+t/TG−t, G+G+t/G−G−t, and TTt. On the other hand, three out of five observed TFB dimer conformers are exclusively made of non-observed TFB monomer subunits and only one of them is made of two observed TFB monomer subunits. Detailed examinations of the conformational abundances of several previously reported fluoroalcohol aggregates including trifluoropropanol (TFP)40,41 and 2,2,3,3,3-pentafluoro-1-propanol42 suggested that the intermolecular hydrogen bonding interactions can easily modify the OH orientation (i.e. g−, g+ and t-form of OH) of the associated alcohol subunits. Therefore, a modified kinetically controlled model was proposed. Acknowledging that the g−, g+ and t forms of OH can interconvert easily in a jet expansion, we grouped the TFB monomer conformers into five families, TG (90.3%), GG (6.2%), TT (2.9%), GT (0.5%) and G+G− (0.1%), where the abundances in the brackets are calculated assuming a Boltzmann distribution using the relative monomer energies and a previously reported conformational temperature of 120 K.15 Based on the kinetically controlled dimer formation process, it became immediately obvious that only three dimer families: (TG,TG) (81.7%), (TG,GG) (11.2%), and (TG,TT) (5.2%), have abundances >1% (see Fig. S2, ESI† for details). The respective binary families for each of the 16 predicted TFB binary conformers are also listed in Table 1.
The observed I, II, IV and V are the four most stable conformers in the (TG,TG) family, while the observed XIII is the most stable conformer in the (TG,TT) family. Within each family, conformer conversions are easily possible as these are associated with different OH orientation directions. In the current modified kinetic-thermodynamic model, we assumed that the abundances of conformers within each family are largely governed by their relative energies which can be predicted based on a Boltzmann distribution at a specified conformational temperature, for example 120 K. For conciseness, we considered only the 16 conformers listed in Table 1 and predicted their abundances (Fig. S2, ESI†) based on the above described modified kinetic–thermodynamic model and the ZPE corrected relative energies listed in Table 1. It is important to recognize that the relative energy ordering shows only slight variation among the four different DFT levels of theory, whereas that predicted at the MP2 level differs a bit more.
Despite the minor uncertainties in the predicted energy ordering, it is easy to appreciate, based on the above model, why X was not observed and XIII was detected. X belongs to the family (GG,GG) which has a total shared abundance of only ∼0.4%, below the current experimental detection limit. The next obvious question is why was III not observed? III is the most stable conformer in the family (TG,GG) with a shared abundance of 11.2%. With eight (TG,GG) conformers listed in Table 1, the abundance of III was predicted to be ∼5%, similar to that of V. V, however, has an extremely large μa of 6.7 D, whereas the largest dipole component of III is only ∼1.2 D, about five to six times smaller. Since the observed line intensity is proportional to the square of μa,b,c, the strongest lines of III are expected to be about 30 times weaker than those of V, rendering it undetectable. The current modified kinetic–thermodynamic model predicts the theoretical abundances ratio of I:
II
:
IV
:
V
:
XIII to be 10
:
3
:
2
:
1
:
1, based on ΔE0 at the B3LYP-D3BJ/def2-TZP level, in good agreement with the experimental ratio of 9
:
3
:
3
:
1
:
1.
The NCI analyses of the five observed TFB dimer conformers are shown in Fig. 3, together with the same analyses of the most stable TFE8 and TFP41 dimer conformers, for comparison. As can be seen from Fig. 3, all the observed TFB dimer conformers exhibit a blue(-green) isosurface corresponding to an attractive O–H⋯O hydrogen bond whose bond length ranges from 1.870 to 1.947 Å at the B2PLYP-D3BJ/def2-TZVP level. In addition, there exist one C–H⋯F and two C–H⋯O hydrogen bonds for conformer I, and two C–H⋯F and one C–H⋯O hydrogen bonds for conformers II, IV, V and XIII. In addition, conformer I also features a weakly attractive O–H⋯F linkage as indicated by the green iso-surface. Interestingly, the NCI plots also reveal the presence of attractive C–H⋯H–C dispersion interactions between the H atoms of the methylene groups of the two subunits in all the observed TFB dimer conformers, whereas attractive C–H⋯H–C interactions are not found in the most stable conformers of the TFE and TFP homodimers. The result suggests that the longer n-alkyl carbon chain in TFB compared to TFE and TFP moves the distance of C–H⋯H–C into the van der Waals interaction region, facilitating the weak attractive interaction.
![]() | ||
Fig. 3 NCI plots (s = 0.55) of the five observed TFB dimer conformers, as well as the most stable TFE and TFP conformers based on the optimized geometries at the B2PLYP-D3BJ/def2-TZVP level. Blue regions represent strong attractive interactions, green regions represent weak attractive interactions, and red regions represent repulsive interactions. Please also refer to Fig. S3 (ESI†) for identification of specific NCI interactions in the five observed TFB dimer conformers by the QTAIM analyses. |
The results from the QTAIM analyses (see Fig. S3, ESI†) reveal that there exist five, six, five, five, and six bond critical points (BCPs) in conformers I, II, IV, V, and XIII, respectively. For conformer I, a BCP associated with C–H⋯H–C was not identified. It should be noted that all the BCPs identified by the QTAIM analyses exhibit corresponding green or blue isosurfaces in the NCI plots. The energy associated with each BCP was estimated using a simplified approach,43i.e., E = 0.5V(r), where V(r) indicates the electronic potential density at the corresponding BCP. In all the observed conformers, the energies of the O–H⋯O hydrogen bonds range from −26.5 to −33.6 kJ mol−1, and the C–H⋯O hydrogen bonds have energies of −4.1 to −8.7 kJ mol−1. The energies of the C–H⋯F hydrogen bonds vary between −2.6 kJ mol−1 and −4.6 kJ mol−1, and the energy of the O–H⋯F hydrogen bond in conformer I was computed to be −9.9 kJ mol−1. The attractive C–H⋯H–C dispersion interactions in all the conformers II, IV, V, and XIII exhibit an energy between −1.8 and −3.3 kJ mol−1, which indicates that the existence of such dispersion interactions plays a crucial role in stabilizing and establishing the relative energy ordering of the studied binary conformers.
To quantitatively appreciate the physical nature of the intermolecular interactions in the five observed TFB dimer conformers, an energy decomposition analysis based on the SAPT method was conducted and the results are summarized in Table S12, ESI.† Similar SAPT analyses (Table S12, ESI†) of the most stable conformers of the dimers of water, methanol, ethanol, FE, TFE, and TFP were also performed. A comparison of the energy decomposition results of the five observed TFB conformers and the most stable binary conformers of five shorter chain alcohols is graphically displayed in Fig. S4, ESI† while a concise comparison with only the most stable conformers of the six alcohol dimers is given in Fig. 4. Among the five observed TFB dimer conformers, conformer V, which is made of two most stable monomer subunits TG+t (or TG−t), is least efficient in binding with a total interaction energy of 29.5 kJ mol−1, while II, IV, and XIII have quite similar interaction energies ranging from 32.1 to 34.0 kJ mol−1, and finally, I is most efficient at 38.0 kJ mol−1. The relative importance of the electrostatic, induction, and dispersion contributions remains about 50%, 17% and 33%, respectively, in all these five conformers, with I leading in all these categories in terms of their absolute magnitudes. Among the three trifluoro-alcohols, the total interaction energy increases from 29.0 to 38.0 kJ mol−1 as the alkyl carbon chain gets longer, and so do the electrostatic and dispersion contributions. While the electrostatic contribution maximizes at FE, the dispersion contribution peaks at TFB. Among the six related aliphatic alcohol dimers, the electrostatic and dispersion interactions are the major contributors to their stabilization. Overall, both fluorination and the alkyl chain length have important effects on the nature of NCIs and the total interaction energies.
Interestingly, the experimental abundances do not follow a simple theoretical Boltzmann distribution, an issue previously reported for other alcohol dimers such as the cyclohexanol dimer.2 By developing a modified kinetic-thermodynamic model, the (non-)observation of certain low energy TFB conformers was satisfactorily rationalized and the predicted conformational abundances show good agreement with the experimental ones. This analysis is important in terms of current efforts to benchmark theoretical conformational energy ordering using high quality data such as jet-cooled rotational spectra.
The QTAIM, NCI and SAPT analyses offer deep insights into the nature of the intermolecular interactions involved in stabilizing the observed TFB dimer conformers. While the electrostatic interactions provide the dominant attractive stabilization effects for the alcohol dimers discussed, the dispersion contributions noticeably increase with increasing alkyl chain length and peaks with TFB, the one with the longest chain considered here. The study demonstrates the synergistic interplay between London dispersion interactions and several different hydrogen bonds, and also the noticeable impact of dispersion interactions on the energy ordering of the TFB dimer conformers.
Footnotes |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4cp00401a |
‡ Present address: Deutsches Elektronen-Synchrotron (DESY), Notkestraße 85, 22607 Hamburg, Germany. |
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