Open Access Article
Youssef Draouia,
Smaail Radi*a,
Amine Tanana,
Afaf Oulmidiab,
Haralampos N. Miras
c,
Redouane Benabbesd,
Sabir Ouahhoudod,
Samira Mamrid,
Aurelian Rotarue and
Yann Garcia
*b
aLCAE, Department of Chemistry, Faculty of Science, University Mohamed I, P.O. Box 524, Oujda 60 000, Morocco. E-mail: s.radi@ump.ac.ma
bInstitute of Condensed Matter and Nanosciences, Molecular Chemistry, Materials and Catalysis (IMCN/MOST), Université Catholique de Louvain, Belgium. E-mail: yann.garcia@uclouvain.be; Fax: +32-10472330
cSchool of Chemistry, Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, UK
dLaboratory of Biochemistry and Biotechnology, Department of Biology, Faculty of Science, University Mohamed I, P.O. Box 524, Oujda 60 000, Morocco
eDepartment of Electrical Engineering and Computer Science & Research Center MANSiD, “Stefan Cel Mare” University, University Street, No. 13, Suceava 720229, Romania
First published on 15th June 2022
A new pyrazole ligand, N,N-bis(2(1′,5,5′-trimethyl-1H,1′H-[3,3′-bipyrazol]-1-yl)ethyl)propan-1-amine (L) was synthesized and characterized by 1H-NMR, 13C-NMR, FT-IR and HRMS. The coordination ability of the ligand has been employed for the construction of a new family of coordination complexes, namely: [Cu2LCl4] (1), [ML(CH3OH)(H2O)](ClO4)2 (MII = Ni (2), Co (3)) and [FeL(NCS)2] (4). The series of complexes were characterized using single-crystal X-ray diffraction, HRMS, FT-IR and UV-visible spectroscopy. Moreover, the iron(II) analogue was investigated by 57Fe Mössbauer spectroscopy and SQUID magnetometry. Single-crystal X-ray structures of the prepared complexes are debated within the framework of the cooperative effect of the hydrogen bonding network and counter anions on the supramolecular formations observed. Furthermore, within the context of biological activity surveys, these compounds were reviewed against different types of bacteria to validate their efficiency, including both Gram-positive as well as Gram-negative bacteria. Enhanced behaviour towards Fusarium oxysporum f. sp. albedinis fungi, were detected for 1 and 4.
According to recent literature reports,9,10 the preparation of pyrazole based ligands with multiple coordination sites remains a challenging task. Such five-membered heterocyclic ligands associated with hydrogen bonding as well as π–π interactions can lead to interesting features, such as flexibility, ductility and chelation properties for the resulting coordination complexes.11 The construction of these complexes depends on the effect of hydrogen bonding,12 donor atoms,13 counter anions,14 solvent15 and the topologies of the selected ligand.16 In addition, such organic molecules were found to exhibit various properties, be pharmacological,17 chemosensory and photophysical,18 optical and morphological properties,19 to name but a few. Thus, coordination complexes formed with pyrazole building blocks may offer excellent compounds for the exploration of new functionalities and investigation of chemical and electronic behaviours. For example, a large number of pyrazole-based coordination complexes with cobalt and copper revealed interesting antioxidant activity.20 Moreover, pyrazole iron complexes, revealed remarkable electronic properties (e.g. spin crossover phenomena21,22) or catalytic selectivity (in the hydrosilylation of organocarbonyl substrates23). Additionally, relevant pyrazolate complexes of cadmium, nickel and mercury were found to act as efficient antimicrobial agents due to the induced disruption of the cell membrane's integrity in the case of Gram positive and Gram negative bacteria.24 Recent examples of iridium and platinum pyrazolate complexes demonstrated too highly promising activity in medical applications as in the case of anti-cancer agents.25,26
Inspired by the observed structural diversity and wide range of applications, our group developed new pyrazolate derivatives27,28 and investigated their efficiency in the coordination of transition metals. This research objective is actually the first step in the construction of environmentally friendly hybrid silica-based materials for extraction of transition metals and purification of industrial waste water.29,30
In this work, we discuss the preparation and characterisation of a new highly flexible pyrazole ligand N,N-bis(2(1′,5,5′-trimethyl-1H,1′H-[3,3′-bipyrazol]-1-yl)ethyl)propan-1-amine (L) which exhibits multiple coordination sites due to the presence of four pyrazolate rings. It was characterised by 1H NMR, 13C NMR, infra-red spectroscopy, and high-resolution mass spectrometry. Moreover, the ligand was used for the synthesis of four new coordination complexes (Scheme 1), namely: [Cu2LCl4] (1), [ML(CH3OH)(H2O)] (MII = Ni (2), Co (3)) and [FeL(NCS)2] (4). The complexes were characterised by single crystal X-ray diffraction, elemental analysis, FT-IR and UV-visible spectroscopy. Additionally, the electronic structure of the iron pyrazolate adduct was investigated further using 57Fe Mössbauer spectroscopy and SQUID magnetometry. The antibacterial properties of L and 1–4 were investigated against Staphylococcus aureus and Streptococcus spp as Gram-positive specimens also Escherichia coli and Klebsiella spp. as Gram-negative specimens. Their antifungal performance versus Fusarium oxysporum f.sp. albedinis fungi was also reviewed.
32 and SHELXL-97
33 using the WinGX software package.34 Data collection and reduction were performed using the Apex2 software package. Corrections for incident and diffracted beam absorption effects were applied using empirical absorption corrections.35 All the atoms and most of the carbon atoms were refined anisotropically. Solvent molecule sites were found and included in the refinement of the structures. Final unit cell data and refinement statistics for 1–4 are collected in Table S1.† Crystallographic data for compounds 1–4 (CCDC 1: 2154263, 2: 2154264, 3: 2154265 and 4: 2154266).†
The tosylated product (4.1 g, 10.9 mmol, 2 equiv.) was dissolved in 80 mL of acetonitrile then potassium carbonate (4.39 g, 32.8 mmol, 3 equiv.) was added. To the resulting mixture, propylamine (0.32 g, 5.5 mmol, 1 equiv.) dissolved preliminary in acetonitrile (10 mL), was added dropwise and the reaction mixture was refluxed for 15 days (82 °C) in a closed vessel. After filtration, the solvent was halfway evaporated under vacuum, then the mixture was left in the fridge at 0 °C for 12 hours. A white precipitate was formed, after filtration, the white powder was washed with cold acetonitrile (5 mL) and then diethyl ether (10 mL). Yield 30% (1.5 g). M.p 188 °C. 1H-NMR (300 MHz, DMSO-d6) δ ppm: 0.81 (t, J = 7.4 Hz, 3H, CH3–CH2), 1.41 (q, J = 7.4 Hz 2H, CH3–CH2–CH2), 2.24 (s, 3H, CH3–C), 2.27 (s, 3H, CH3–C), 2.45 (t, J = 7.4 Hz, 2H, Niso–CH2–CH2), 2.91 (t, J = 6.8 Hz 2H, CH2–CH2-Nprop), 3.79 (s, 3H, CH3–N), 3.97 (t, J = 6.8 Hz 2H, NPz–CH2–CH2), 6.24 (s, 1H, C–CH–C), 6.28 (s, 1H, C–CH–C). 13C-NMR (75 MHz, DMSO-d6) δ ppm: 11.3 (s, 2C, CH3–C, Pz), 11.8 (s, 2C, CH3–C, Pz-tripod), 20.6 (s, 1C, CH3–CH2), 31.0 (s, 1C, CH3–CH2–CH2), 36.1 (s, 2C, CH3–N), 47.8 (s, 2C, CH3–NPz), 55.0 (s, 2C, CH2–CH2–Nprop), 57.4 (s, 1C, CH2–CH2–Niso), 102.7 (s, 2C, C–C
C, Pz), 102.9 (s, 2C, C–C
C, Pz-tripod) 139.2 (s, 2C N–C, Pz) 139.4 (s, 2C, N–C, Pz-tripod) 145.1 (s, 2C, C–C–Pz), 145.3 (s, 2C, C–C, Pz-tripod). FTIR (KBr, cm−1): 3143 (w), 2969 (w), 1537 (s), 1422 (m), 1230 (m), 929 (w), 780 (m). HRSM (ESI) (methanol): m/z = 464.3244 [M + H]+.
:
2), and collected. Yield 44% (31 mg). M.p 208 °C. FT-IR (KBr, cm−1): 3129 (w), 2955 (w), 1544 (s), 1425 (m), 1276 (m), 945 (w), 792 (m). HRMS (ESI) (acetonitrile): m/z = 561.2145 [L + CuCl]+, 659.11254 [L + Cu2Cl2]+, 263.12237 [1/2(L + Cu)]+.
:
2), and collected. Yield 29% (21 mg). M.p 200 °C. FTIR (KBr, cm−1): 3132(w), 2960(w), 1546(s), 1416(m), 1233(m), 943(w), 784(m). HRMS (ESI) (acetonitrile): m/z = 260.6259 [1/2(L + Ni)]+.
:
2), and collected. Yield 35% (26 mg). M.p. 192 °C. FT-IR (KBr, cm−1): 3131(w), 2963(w), 1554(s), 1430(m), 1278(m), 947(w), 801(m). HRSM (ESI) (acetonitrile): m/z = 261.1246 [1/2(L + Co)]+.Reaction of the ligand (L) with different metal salts, in methanol in 1
:
2 or 1
:
1 molar ratio was carried out. Reaction with CuCl2·2H2O in a 1
:
2 molar ratio afforded a binuclear Cu(II) complex (1) which was crystallized by diethyl ether vapour diffusion. Reaction with Ni(ClO4)2·6H2O or Co(ClO4)2·6H2O salts in a 1
:
1 molar ratio yielded to a mononuclear Ni(II) complex (2) which was also crystallized by diethyl ether vapour diffusion. The complex 4 was however synthetized in two steps involving the reaction of FeCl2·4H2O with KNCS in 1
:
2 molar ratio in ethanol with a small quantity of ascorbic acid to prevent oxidation of the metal centre. This process increased the reactivity of the iron salt and avoided the involvement of chloride anions during the coordination reaction with the ligand. In a second step, L was reacted with freshly prepared Fe(NCS)2 in ethanol in a 1
:
1 molar ratio to yield to an Fe(II) complex (4). Single crystals were obtained by slow evaporation in ethanol.
C and the aliphatic tertiary amine, respectively (Fig. S1†). Noticeable shifts in the wavenumber were observed after coordination. Indeed, in the case of complexes 1–4, the stretching vibration associated to the N–H group at 3143 cm−1 was shifted to 3129 cm−1 (1), 3132 cm−1 (2), 3131 cm−1 (3) and 3133 cm−1 (4). On the other hand, the peaks associated with the C
C aromatic rings vibration centred at 1537 cm−1 was shifted to 1544 cm−1 (1), 1546 cm−1 (2), 1554 cm−1 (3) and 1541 cm−1 (4). The C–H aromatic vibrations observed at 2960 cm−1 for L have shifted to 2955, 2964, 2963 and 2961 upon complexation in 1, 2, 3 and 4, respectively. Furthermore, the aliphatic tertiary amine respectively noticed at 1230 cm−1 also shifted to 1278, 1277, 1280, and 1275 cm−1 respectively for 1, 2, 3 and 4. Non coordinated perchlorate anions were also detected at 1084 and 1093 cm−1 for 2 and 3, respectively. A strong band was observed at 2066 cm−1 for 4, corresponding to the axial NCS ligand.
The electronic spectra of L and the complexes 1–4 were recorded by diffuse reflectance spectroscopy on solids. Absorption bands in the UV region (∼200–300 nm) are observed, which are assigned to intra-ligand transitions such as π–π* and n–π*, followed by a band around 320 nm assigned to metal-to-ligand charge transfer (MLCT) processes (Fig. S2†). Complex 1 reveals in addition a large band centred around 525 nm and a well-shaped band centred at λmax = 760 nm. These two bands may be attributed to the two chromophores revealed in 1 by single crystals-X-ray diffraction (see next section). Complexes 2 reveals too a band centred at λmax = 610 nm of moderate intensity corresponding to d–d transitions whereas a weak band is found at λmax = 445 nm for 3.
1 space group. The unit cell contains two molecular species and two co-crystallized methanol molecules. The two distinct copper centres are in the second oxidation state and occupy the centre of a distorted tetrahedral and square pyramidal coordination spheres which are completed by two terminal chloride ligands and two nitrogen atoms provided by the two branches of organic ligand in the case of Cu1 and two terminal chloride ligands and three nitrogen atoms in the case of Cu2, respectively (Fig. 1A). The average Cu–Cl bond lengths are found to be between 2.206(1)–2.3762(8) Å while the distances between the Cu(II) metal centres and the pyrazolic nitrogen atoms fall in the range 2.013(2)–2.052(2) Å, respectively. The N–N bond distances are in the range of 1.348(2)–1.363(2) Å, which is characteristic for pyrazole. The unit cell contains two molecular species where the presence of inter- and intramolecular interactions contribute to the stability of the crystal packing. More specifically, the intermolecular interactions (2.701(2) Å) highlighted in blue (Fig. 1B) are developed between the terminal chloro-ligands and the hydrogen atoms of the pyrazolic ring's methyl-groups. In a similar manner, a second set of intramolecular interactions are highlighted in red dotted lines and are developed between the methyl groups of one dimer with the pyrazolic ring of the neighbouring one (Fig. 1B).
Compound 2 crystalized in the monoclinic P21/c space group. The unit cell contains four molecular species and two co-crystallized perchlorate counterions per complex. The Ni(II) centre is in the second oxidation state and occupy the centre of a distorted octahedral coordination sphere which is completed by four nitrogen pyrazolic atoms provided by the two branches of L, one water and a methanol solvent molecule, respectively (Fig. 2). Interestingly, the geometry deviates from the one observed in the case of 1, while the ligand coordinates to the metal centre only via pyrazolic nitrogen atoms. The Ni–O bond lengths observed in the water and methanol terminal ligands are found to be 2.099(1) and 2.092(1) Å while the distances between the Ni(II) metal centre and the pyrazolic nitrogen atoms fall in the range 2.104(1)–2.128(2) Å, respectively. The N–N bond distances are in the range of 1.360(2)–1.364(2) Å. The bond angles on the equatorial plane range between 86.24(7)–94.22(7)°. The pyrazolic nitrogen atoms at axial positions are located at a distance of 2.117(2) and 2.106(2) Å and form angles with the metal centre that fall in the range of 78.10(7)–98.53(7)°, respectively. In a similar fashion, compound 3 crystalized in the monoclinic P21/c space group. The unit cell contains four molecular species and two co-crystallized perchlorate counterions. The complex adopts an isostructural motif to the one observed in the 2 (Fig. 2). The Co(II) centre is in the second oxidation state and occupy the centre of a distorted octahedral coordination sphere, which is completed by four nitrogen pyrazolic atoms provided by the two branches of the organic ligand one water and a methanol solvent molecule, respectively. The Co–O bond lengths observed in the water and methanol terminal ligands are found to be 2.120(2) and 2.108(2) Å while the distances between the Co(II) metal centre and the pyrazolic nitrogen atoms fall in the range 2.123(2)–2.158(2) Å, respectively. All the Co–X bonds are found to be slightly elongated in comparison to complex 2. The pyrazolic N–N bond distances are in the range of 1.356(2)–1.359(3) Å. The bond angles on the equatorial plane range between 85.54(8)–94.94(9)°. The pyrazolic nitrogen atoms at axial positions are located at a distance of 2.155(2) and 2.158(2) Å, and form angles with the metal centre that fall in the range of 76.96(8)–99.80(8)°, respectively.
Complex 4 crystalized in the P21/c space group too but the unit cell contains four molecular species. The Fe(II) centre is in the second oxidation state and occupy the centre of a distorted octahedral coordination sphere which is completed by four nitrogen pyrazolic atoms provided by the two branches of L and two SCN− anions which are responsible for balancing the overall charge of the complex (Fig. 3). The bond lengths between the metal centre and the pyrazolic nitrogen donors (Fe–Npy) fall within the range of 2.226(2) and 2.304(2) Å while the distances between the Fe(II) metal centre and the NSCN nitrogen atoms are found to be 2.085(2) – 2.099(2) Å, respectively. Compound 4 exhibit longer M–NL distances compared to other reported complexes of this substance class, thus indicating a high-spin (HS) state for the Fe(II) ions. Additionally, the bond angles on the equatorial plane range between 87.35(8)–96.7(1)°. The pyrazolic nitrogen atoms at axial positions are located at a distance of 2.274(2) and 2.304(2) Å and form angles with the metal centre that fall in the range of 73.87(7)–98.96(8)°, respectively. The local distortion parameter around the metal ion is ΣHS = 73.42°.44 This structural parameter, defined as the sum of the deviations from 90° of the 12 cis-N–M–N angles, is useful to accurately evaluate the octahedral distortion of the MN6 coordination sphere.45
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| Fig. 3 View of the molecular structure of [FeL(NCS)2] (4) at 150 K. Colour code: C, black; N, nitrogen; yellow, sulfur; light grey, hydrogen; olive green, iron. | ||
Given these spin state characteristics, a SQUID analysis was undertaken to determine whether complex 4 could switch its spin states below 150 K. At room temperature, χMT = 3.71 cm3 K mol−1, which fits with Fe(II) ions in the HS state, as well as with the Mössbauer result (Fig. 5). Upon cooling, the χMT product remains constant even below 150 K, confirming a full HS state. Below 50 K, a decrease of χMT is observed in agreement with the zero-field splitting of HS Fe(II) ions.49 Thus complex 4 remains paramagnetic and do not display a thermally induced spin state crossover behaviour.
![]() | ||
| Fig. 5 χMT vs. T for 4 over the temperature range 400–4.2 K. The measurement was repeated for three runs over the same temperature interval. | ||
| Compound | Bacteria | |||
|---|---|---|---|---|
| S. aureus[p] | St. spp.[p] | E. coli[n] | K. spp.[n] | |
| a [p]: Gram-positive; [n]: Gram-negative. | ||||
| L | 13 | 11 | 10 | 13 |
| 1 | 27 | 12 | 28 | 17 |
| 2 | 21 | 18 | 20 | 23 |
| 3 | 25 | 14 | 26 | 18 |
| 4 | 10 | 11 | 11 | 12 |
| DMSO | 0 | 0 | 0 | 0 |
| Lactic acid | 17 | 21 | 15 | 17 |
| Gentamicin | 41 | 43 | 32 | 42 |
![]() | ||
| Fig. 6 Antibacterial activities recap plot of L and the coordination complexes 1–4. Experiments were performed in triplicate. | ||
All compounds showed moderate to decent antibacterial activities, compared to literature reports. Complexes 1, 2 and 3 demonstrate noticeable improvements in term of inhibition compared to the ligand L and complex 4. In particular, complexes 1 and 3 reveal significant enhancement towards both Gram-positive S. aureus and Gram-negative E. coli. This is much higher compared to [Co(dmphen)X2] (dmphen = 2,9-dimethyl-1,10-phenanthroline) which was found to exhibit 17 and 18 mm for E. coli and.
S. aureus in the case of X = Br and 18 mm for both E. coli and S. aureus for X = NCS.50 The inhibition zone is much higher than the positive control lactic acid too. Both of these complexes exhibit modest inhibition increase against Klebsiella spp bacteria, to match the same score as lactic acid. On the other hand, complex 2 affords an inhibition jump up in all tested bacteria, especially the Gram-negative Klebsiella spp. which was again greater than lactic acid.
In conclusion, the best recorded results for S. aureus were claimed for 1 and 3, which show 27 and 25 mm inhibition zones, respectively. The highest attitude against Streptococcus spp was found for 2 with a decent 18 inhibition zone. Meanwhile 1 and 3 earned once again the steepest inhibition zone for E. coli being 28 and 26 mm, respectively. Finally, regarding Klebsiella spp., the top fruition was reached by 2 with 23 mm. These results were compared to several reported ligand and complexes with potential antibacterial behaviors and proved to be better to competitive.51–53
![]() | ||
| Fig. 7 Antifungal activities of L and the coordination complexes 1–4. Experiments were performed in triplicate. | ||
According to Table 2, all tested samples present considerable anti-Fusarium activities, but complexes 1 and 4 can be distinguished. These results are quite expected due to the fact that the use of coordination complexes is assisted by the improvement of the overall therapeutic activities.55 The complexation of L with copper and iron metal ions leads to an increase in the lipophilicity and a simultaneous expansion of the hydrocarbon portion. In addition, chelation lowers the polarity of the metal ion due to the partial sharing of its positive charge with the donor groups in the coordination complexes. This process raises the lipophilicity of the metal complexes and thus facilitates their permeability through the lipid bilayer of membranes.56 To confirm this effect, these complexes were tested three times to determine the necessary volume to reach a 50% inhibition: 32 and 83.5 μmol L−1 were needed for 1 and 4, respectively. These results are superior to literature results for many pyrazole derivatives.57–59
| Compound | Sample volumes (μL) | Concentration (μmol L−1) | Dx (cm) | Inhibition (%) |
|---|---|---|---|---|
| L | 50 | 28 | 7.5 | 11.76 |
| 100 | 58.2 | 5.6 | 34.12 | |
| 200 | 114.3 | 5.3 | 38 | |
| 1 | 50 | 8.5 | 7.5 | 11.76 |
| 100 | 17.7 | 5.7 | 32.94 | |
| 200 | 34.8 | 4.2 | 51 | |
| 2 | 50 | 16.9 | 7.2 | 15.29 |
| 100 | 35.1 | 6.5 | 23.53 | |
| 200 | 68.8 | 4.8 | 44 | |
| 3 | 50 | 16.8 | 7.4 | 12.94 |
| 100 | 3.5 | 7.3 | 14.12 | |
| 200 | 68.7 | 6 | 29 | |
| 4 | 50 | 20.5 | 7.6 | 10.59 |
| 100 | 42.5 | 5 | 41.18 | |
| 200 | 83.5 | 4.3 | 49 |
Footnote |
| † Electronic supplementary information (ESI) available. CCDC 2154263–2154266. For ESI and crystallographic data in CIF or other electronic format see https://doi.org/10.1039/d2ra03414j |
| This journal is © The Royal Society of Chemistry 2022 |