Bryson A. Hawkinsa,
Jonathan J. Du‡
a,
Felcia Laia,
Stephen A. Stantona,
Peter A. Williamsab,
Paul W. Groundwater
a,
James A. Platts
c,
Jacob Overgaard
d and
David E. Hibbs
*a
aSydney Pharmacy School, Faculty of Medicine and Health, The University of Sydney, NSW 2006, Australia. E-mail: david.hibbs@sydney.edu.au
bSchool of Science and Health, Western Sydney University, Locked Bag 1797, Penrith, NSW 27513, Australia
cSchool of Chemistry, Cardiff University, Cardiff, CF10 3AT, UK
dDepartment of Chemistry and Centre for Integrated Materials Research (iMAT), Aarhus University, Langelandsgade 140, Aarhus C, DK-8000, Denmark
First published on 23rd May 2022
The pharmaceutical agent theophylline (THEO) is primarily used as a bronchodilator and is commercially available in both tablet and liquid dosage forms. THEO is highly hygroscopic, reducing its stability, overall shelf-life, and therefore usage as a drug. THEO and dicarboxylic acid cocrystals were designed by Trask et al. in an attempt to decrease the hygroscopic behaviour of THEO; cocrystallisation of THEO with malonic acid (MA) did not improve the hygroscopic stability of THEO in simulated atmospheric humidity testing. The current study employed high-resolution X-ray crystallography, and Density Functional Theory (DFT) calculations to examine the electron density distribution (EDD) changes between the cocrystal and its individual components. The EED changes identified the reasons why the THEO:MA cocrystal did not alter the hygroscopic profile of THEO. The cocrystal was equally porous, with atomic packing factors (APF) similar to those of THEO 0.73 vs. 0.71, respectively. The THEO:MA (1) cocrystal structure is held together by an array of interactions; a heterogeneous synthon between the imidazole and a carboxylic fragment stabilising the asymmetric unit, a pyrimidine-imidazole homosynthon, and an aromatic cycle stack between two THEO moieties have been identified, providing 9.7–12.9 kJ mol−1 of stability. These factors did not change the overall relative stability of the cocrystal relative to its individual THEO and MA components, as shown by cocrystal (1) and THEO being equally stable, with calculated lattice energies within 2.5 kJ mol−1 of one other. The hydrogen bond analysis and fragmented atomic charge analysis highlighted that the formation of (1) combined both the EDD of THEO and MA with no net chemical change, suggesting that the reverse reaction — (1) back to THEO and MA — is of equal potential, ultimately producing THEO hydrate formation, in agreement with the work of Trask et al. These results highlight that a review of the EDD change associated with a chemical reaction can aid in understanding cocrystal design. In addition, they indicate that cocrystal design requires further investigation before becoming a reliable process, with particular emphasis on identifying the appropriate balance of synthon engineering, weak interactions, and packing dynamics.
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Fig. 1 Chemical structures of (a) theophylline(1,3-dimethylxanthine, THEO) and (b) malonic acid (MA). |
(THEO) | (MA) | (1) | |
---|---|---|---|
Formula | C7H8N4O2 | C3H4O4 | C7H8N4O2·C3H4O4 |
Molecular mass | 168.7 | 104.1 | 284.2 |
Crystal size (mm) | 0.82 × 0.43 × 0.25 | 0.36 × 0.62 × 0.74 | 0.10 × 0.09 × 0.08 |
Temperature (K) | 150(0) | 150(0) | 20(0) |
Crystal system | Orthorhombic | Triclinic | Monoclinic |
Space group | Pna21 | P![]() |
C2/c |
a (Å) | 24.36(2) | 5.16(1) | 17.15(5) |
b (Å) | 3.78(10) | 5.32(1) | 8.37(2) |
c (Å) | 8.48(10) | 8.19(1) | 17.49(5) |
α (°) | 90 | 108.09(1) | 90 |
β (°) | 90 | 101.25(1) | 106.95(8) |
γ (°) | 90 | 95.26(1) | 90 |
Volume (Å3) | 780.51 | 206.77 | 2400.99 |
Z | 4 | 2 | 2 |
Refinement method | Full-matrix least-squares on F2 | Full-matrix least-squares on F2 | Full-matrix least-squares on F2 |
No. of reflections collected | 54![]() |
103![]() |
30![]() |
No. unique | 9833 | 3476 | 9836 |
Rint | 0.045 | 0.026 | 0.0243 |
Completeness (%) | 99.6 | 100 | 97.9 |
No. reflections used | 8913 | 3472 | 9836 |
ρc (g cm−1) | 1.53 | 1.67 | 1.57 |
F(000) | 376.0 | 108.0 | 1184.0 |
μ (mm−1) | 0.117 | 0.162 | 0.006 |
sin![]() |
1.110 | 1.000 | 1.000 |
Index ranges | 0 ≤ h ≤ 54 | −10 ≤ h ≤ 9 | −34 ≤ h ≤ 32 |
0 ≤ k ≤ 8 | −10 ≤ k ≤ 10 | 0 ≤ k ≤ 16 | |
−18 ≤ l ≤ 18 | 0 ≤ l ≤ 16 | 0 ≤ l ≤ 34 | |
Thermal Diffuse Scattering (TDS) integration correction factors [a,b] | 0.05, 0.5 | −0.15, −0.05 | 0.05, 0.7 |
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IAM refinement | |||
Final R1, wR2 | 0.0530, 0.1283 | 0.0370, 0.108 | 0.036, 0.072 |
Goodness of fit | 1.298 | 1.035 | 1.683 |
Residual density (e Å−3) | −0.37, 0.62 | −0.7, 1.1 | −0.295, 0.813 |
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Multipole refinement (standard) | |||
Nobs/Nvar | 26.32 | 18.21 | 17.95 |
R(F), R(F2), all data | 0.0625, 0.0309 | 0.0242, 0.0869 | 0.0433, 0.0385 |
Residual density (e Å−3) | −0.310, 0.319 | −0.474, 0.277 | −0.323, 0.406 |
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Multipole refinement (TDS) | |||
Nobs/Nvar | 26.32 | 18.15 | 17.95 |
R(F), R(F2), all data | 0.0578, 0.0245 | 0.0239, 0.0817 | 0.0407, 0.0322 |
Residual density (e Å−3) | −0.290, 0.253 | −0.391, 0.342 | −0.234, 0.287 |
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Multipole refinement (SHADE) | |||
Nobs/Nvar | 26.93 | 18.61 | 18.36 |
R(F), R(F2), all data | 0.0621, 0.0300 | 0.0285, 0.0809 | 0.0436, 0.0392 |
Residual density (e Å−3) | −0.305, 0.343 | −0.390, 0.391 | −0.341, 0.380 |
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Multipole refinement (TDS + SHADE) | |||
Nobs/Nvar | 26.96 | 18.61 | 17.95 |
R(F), R(F2), all data | 0.0583, 0.0256 | 0.0285, 0.0761 | 0.0433, 0.0385, 0.0406 |
Residual density (e Å−3) | −0.223, 0.254 | −0.375, 0.431 | −0.323, 0.406 |
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Fig. 2 ORTEP diagrams of THEO, (a), MA, (b) and the THEO–MA cocrystal (1), (c). Thermal ellipsoids are shown at the 50% probability level.36 |
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Fig. 3 Selected bonding motifs for the asymmetric units of THEO, MA and (1), a,b,c, respectively. Asymmetric units are represented in purple, and non-bonding hydrogen atoms are not labelled for clarity. For THEO, (a), all hydrogen bonds are represented in teal. For MA, (b), the homosynthons are presented in black, and the remaining hydrogen bonds are in green. For (1), (c), the homosynthon is depicted in deep aqua, heterogeneous synthon in black, aromatic cycle stack light green (not on asymmetric unit for clarity), remaining hydrogen bonds are in aqua and hydrogen atoms of methyl groups of THEO moieties are unlabelled unless involved in a hydrogen bond.37 |
The structure and asymmetric unit with bonding arrangements of MA are shown in Fig. 2(b) and 3(b), respectively. Fig. 3(b) shows the seven hydrogen bonds that extend from the asymmetric unit of MA, with MA packing along the c-axis in an antiparallel manner, which is a result of MA having a single rotatable carbon C(02). The magnitude of the torsion angle around C(02) is maintained between MA and (1), with [O(04)–C(03)–C(02)–C(01)] of 172.34° and −172.87°, for MA and (1), respectively. This suggests that MA's rotational potential is limited in (1) and that it has limited ability to add flexibility as a CF in the cocrystal. This planar shape causes MA to act as a spacer between repeating THEO and MA molecules in the crystal lattice. This is in agreement with the recent work of Stanton et al., with the MA moiety in the triclinic THEO:MA polymorph having a near identical torsion angle (−172.18°). However, [O(01)–C(01)–C(02)–C(03)], the opposite direction torsion angle of MA's carbon chain is −167.47° in the triclinic form, compared −122.91° in (1) and −91.86° in MA, respectively.31 It is known that minor torsion angle differences can effect packing density by reducing the potential for weak hydrogen bond formation.7 This suggest that in (1) combining THEO and MA caused limited geometrical differences and limits the change in overall packing from THEO.7 It also suggests that the number of methylenes in dicarboxylic acid CFs is a crucial factor in the resultant hygroscopic stabilities between cocrystals, which has been seen previously in the caffeine glutaric acid (CAF:GLU) cocrystal.12
The structure and asymmetric unit with bonding arrangements of (1) are shown in Fig. 2(c) and 3(c), respectively. Fig. 2(c) shows that (1) contains a single molecule of THEO and MA, while Fig. 3(c) shows four hydrogen bonds that maintain the asymmetric unit of (1); two are the internal asymmetric unit intermolecular hydrogen bonds creating the heterogeneous synthon seen between the imidazole ring of THEO and MA; one hydrogen bond is O(04)–H(04)⋯N(2) and the remaining one is the C(1)–H(1)⋯O(03) bond, this synthon will be referred to as Synthon-1 for the remainder of the manuscript. A homosynthon forms between the protonated imidazole nitrogen N(1) and the oxygen of the pyrimidine moiety [N(1)–H(1A)⋯O(2) and vice versa], this will be referred to as Synthon-2. In (1), a bifurcated contact is created by the direction of the carbonyl oxygen from the carboxylic acid (O(03)⋯O(01) and O(02) ···O(01)). This is the result of the previously discussed torsional rotation of C(02) in MA giving direction to hydrogen bonds within the bifurcated hydrogen bond system; this feature is absent in the triclinic polymorph. Further details of the hydrogen bonds will be discussed in hydrogen bond topology.
The geometry indicates that the combination of THEO and MA has limited effects on lattice manipulation, particularly for crystal packing dynamics. Although MA introduces a slight level of flexibility, it predominately acts as a spacer in the crystal lattice, limiting the branching of weak hydrogen bonds and the potential to alter the overall lattice stability. To review this further, the changes in geometrical parameters that give information on water penetration are assessed below. The hydration of the crystal phase relies on the intermolecular spaces becoming filled with incoming water molecules, which then outcompete the hydrogen bonding networks. One of the geometrical parameters which is related to hydration is the Atomic Packing Factor (APF), which provides an idea of the possible free atomic space both at the surface and within a crystal lattice.32 The APF for (1) and of THEO were calculated using PLATON.32,33 The APF of (1) was slightly higher than that of THEO, 0.73 vs. 0.71, respectively, but no solvent-accessible spaces were identified within the atomic space for either (1) or THEO.32 An alternative method which can be used to quantify the porosity and potential solvent-accessible space in a crystal lattice is to compare the EDD and promolecule density simultaneously. The promolecule space is that where the EDD ≤ 0, which will be defined as void space, this is the empty space within the crystal lattice that could possibly be penetrated in the hydration process.34 For most crystals this amount of space is limited, however, it can be useful in examining differences created by CF addition in order to limit this space in the solvation process. Turner et al. highlighted that non-porous crystals require an isovalue of 0.003 au for a realistic reflection of accessible space within the crystal, however, a further calculation at 0.0003 au will identify the permanent lattice cavities for solvent infiltration.34 The void volumes were calculated using CrystalExplorer at the isovalues of 0.003 and 0.0003 au; and a simple comparison of the void volume compared to total cell volume determines the void volume percentage, i.e. the proportion of empty space inside the lattice. The results of these calculations and graphical representations are shown in Table 2 and Fig. 4.34,35 It can be seen that both THEO and THEO:MA have very similar void volume to total cell volume percentages (17.22 vs. 15.28%, respectively), indicating once again that their porosities are almost identical. This corresponds to the geometry above, where MA did not change the packing dynamics significantly. As such, the geometrical solvation potential of THEO and (1) are nearly identical, in line with the findings of Trask et al.8 For the triclinic THEO:MA, the void at 0.003 au is 15.87%, indicating that the solvation rates between the polymorphs and THEO should be similar. The near identical geometric results seen in THEO, MA, (1) and the triclinic polymorph of (1) suggest that the individual weak interactions require review to identify the best polymorph of THEO:MA compared to THEO. Overall, the geometric findings suggest that the addition of MA does not decrease any void space between the API. This varies from longer length dicarboxylic acids, THEO:GLU, and CAF:GLU where GLU has more rotational centres on the aliphatic carbon chain increasing the variability of the weak hydrogen bonds.7 However, the caffeine and oxalic acid (CAF:OA) and THEO:OA cocrystals, which are both shorter CFs reduced the hygroscopic decay of the methylxanthines better than MA and GLU due to an increase in strong hydrogen bonds.8,11 This suggests that care is required for CF selection to ensure the requisite balance of weak interaction-mediated lattice staggering, and strong synthon design.11
Isovalue/au | Volume/Å3 | Surface area/Å2 | % of cell volume | |
---|---|---|---|---|
(1) | 0.003 | 367.06 | 1136.51 | 15.28 |
THEO | 137.84 | 397.24 | 17.22 | |
(1) | 0.0003 | 0.55 | 5.49 | 0.023 |
THEO | 0.25 | 3.52 | 0.03 |
For THEO a reasonable agreement was seen between the SP and EXP models; the average difference of the ρbcp was −0.12 e Å−3 and ∇2ρbcp by 5.61 e Å−5 for all covalent bonds. The full list of the topology of covalent bonds can be found in ESI (Table S9†). The largest difference between the models was seen in the hydrogen bond donor system of N(1)–H(1A), where the EXP model underestimated the ∇2ρbcp by 25.52 e Å−5. This has been seen previously in electronegative bonding environments. A study by Hawkins et al. showed an underestimation of the EXP ∇2ρbcp compared to the theoretical value but this did not affect ρbcp of the internal covalent bond, hydrogen bond or synthon.12 As such the derived products of hydrogen bond strength were not affected in this environment.12 Similarly, the study of Wagner et al. which was at a higher level of experimental resolution found the ∇2ρbcp around the nitrogen species had near identical ρbcp but much lower ∇2ρbcp compared to the theoretical, which also did not affect the derived hydrogen bond strength.12,39
In MA, an overall good agreement was seen between the SP and EXP results. The EXP differing ρbcp by an average of −0.01 e Å−3 and ∇2ρbcp by 0.95 e Å−5 on all covalent bonds; the complete topology can be found in ESI (Table S10†). The largest difference was seen in the ∇2ρbcp of the carboxyl oxygen environments with the largest difference being 28.87 e Å−5 for O(03)–C(03) bond, which has been well reported on in the past.40
For (1), excellent agreement was found between the EXP and SP models. The EXP model subtly overestimating ρbcp by an average of 0.002 e Å−3 and ∇2ρbcp by 0.74 e Å−5 on all covalent bonds. The largest difference was observed in the O(04)–H(04) bond, where the EXP ρbcp was smaller by 0.32 e Å−3, this could be attributed to the lack of a crystal field in the SP models where the intermolecular hydrogen bonding is not considered. All other topological analyses are reported in ESI (Table S11†).
THEO(s) + MA(s) → THEO:MA(s) |
−148.1 kJ mol−1 + −106.1 kJ mol−1 → −223.1 kJ mol−1 |
In which the change in energy from reactants to product indicates the stability change through the combination of THEO and MA to form (1). There is an overall change in energy is +31.1 kJ mol−1, indicating that (1) is less stable after cocrystal formation compared to THEO following Trask et al., experimental findings.8 Applying the same methods to the triclinic form by Stanton et al., the results are:
−148.1 kJ mol−1 + −106.1 kJ mol−1 → −222.9 kJ mol−1 |
As there is also a 1:1 stoichiometry in this crystal the minimal energetic difference between THEO and the triclinic polymorph of (1) is +31.3 kJ mol−1. This is in line with the geometrical findings and previous accounts of stability differences between conformational polymorphs.12,43 For the THEO:GLU system;
THEO(s) + GLU(s) → THEO:GLU(s) |
−148.1 kJ mol−1 + −129.6 kJ mol−1 → −255.0 kJ mol−1 |
The overall change is +22.7 kJ mol−1.31 From this it can be presumed that THEO:GLU should not have improved stability from THEO, and it should have failed the humidity testing at a point in time prior to THEO. However, the energetic difference for THEO:GLU compared to THEO is less than (1), suggesting THEO:GLU is more stable than (1). This aligns with the experimental results of the humidity studies where it failed testing at day 3 compared to day 1 for THEO:MA.8 This indicates that the formation of the weak interactions, i.e. hydrogen bonding, in (1) do not slow down hydrate formation, compared to THEO and THEO:GLU from the same study.8 The topological analysis will allow the determination of the importance of each hydrogen bond and provide a better understanding of why the engineered synthons in (1) did not modify the hygroscopic profile of THEO. The topology of the hydrogen bonds in THEO, MA and (1) are discussed below and key parameters are summarised in Tables 3–5. The estimates of the hydrogen bond energies present in THEO, MA and (1) were obtained using methods established by Abramov and Espinosa, and categorised based upon the work of Hibbert et al.; hydrogen bonds classified as weak (EHB < 20 kJ mol−1), moderate (EHB = 20–40 kJ mol−1) and strong (EHB > 60 kJ mol−1).44–47
Bond | ρ (e Å−3) | ∇2ρ (e Å−5) | ε | dH···bcp (Å) | dA···bcp (Å) | G/Eh (e Å−3) | V/Eh (e Å−3) | H/Eh (e Å−3) | EHB (kJ mol−1) |
---|---|---|---|---|---|---|---|---|---|
a G/Eh = kinetic energy density, V/Eh = potential energy density, H/Eh = enthalpy energy density, EHB = hydrogen bond energy a = −x + 3/2, y − 1/2, z − 1/2, b = −x + 3/2, y − 1/2, z + 1/2, c = −x + 1, −y + 1, z − 1/2. * infers symmetrical bond of equal magnitude in opposite direction. | |||||||||
N(1)–H(1A)⋯N(2)a* | 0.40(5) | 4.48(6) | 0.08 | 0.548 | 1.232 | 0.38 | −0.46 | 0.07 | −88.54 |
C(1)–H(1)⋯O(1)b | 0.025(3) | 0.04(1) | 0.38 | 1.628 | 1.401 | 0.02 | −0.01 | 0.76 | −2.35 |
C(7)–H(7C)⋯O(2)c | 0.033(4) | 0.515(2) | 0.24 | 1.2122 | 1.5692 | 0.03 | −0.02 | 0.81 | −3.40 |
Bond | ρ (e Å−3) | ∇2ρ (e Å−5) | ε | dH···bcp (Å) | dA···bcp (Å) | G/Eh (e Å−3) | V/Eh (e Å−3) | H/Eh (e Å−3) | EHB (kJ mol−1) |
---|---|---|---|---|---|---|---|---|---|
a G/Eh = kinetic energy density, V/Eh = potential energy density, H/Eh = enthalpy energy density, EHB = hydrogen bond energy. Symmetry operators: a = 1 − x,−y,−z. b = 1 − x, 2 − y, 1 − z. c = 2 − x,1 − y,−z. d = 2 − x,1 − y,−z. e = 2 − x,−y,−z. * infers symmetrical bond of equal magnitude in opposite direction. | |||||||||
O(04)–H(04)···O(03)a* | 0.218(03) | 0.218(32) | 0.01 | 0.55 | 1.13 | 0.29 | −0.24 | 0.05 | −47.05 |
O(01)–H(01)···O(02)b* | 0.230(02) | 5.408(40) | 0.06 | 0.55 | 1.11 | 0.32 | −0.27 | 0.06 | −51.56 |
C(02)–H(02B)⋯O(04)c* | 0.023(7) | 0.570(2) | 0.74 | 1.0278 | 1.5986 | 0.03 | −0.02 | 0.01 | −3.17 |
C(02)–H(02A)···O(01)d | 0.031(5) | 0.538(2) | 0.26 | 1.09 | 1.58 | 0.03 | −0.02 | 0.01 | −3.40 |
O(04)–H(04)⋯O(04)e | 0.091(0) | 1.301(1) | 0.35 | 1.49 | 2.36 | 0.08 | −0.06 | 0.02 | −11.67 |
Bond | ρ (e Å−3) | ∇2ρ (e Å−5) | ε | dH···bcp (Å) | dA···bcp (Å) | G/Eh (e Å−3) | V/Eh (e Å−3) | H/Eh (e Å−3) | EHB (kJ mol−1) |
---|---|---|---|---|---|---|---|---|---|
a G/Eh = kinetic energy density, V/Eh = potential energy density, H/Eh = enthalpy energy density, EHB = hydrogen bond energy. Symmetry operators: a = −x + 3/2, −y − 1/2, −z + 1; b = −x + 3/2, y − 1/2, −z + 1/2; c = −x + 3/2, y + 1/2, −z + 1/2; d = −x + 1, −y + 1, −z + 1. * infers symmetrical bond of equal magnitude in opposite direction. | |||||||||
Interactions within the asymmetric unit | |||||||||
O(04)–H(04)···N(2) | 0.36(23) | 4.68(33) | 0.06 | 0.52 | 1.11 | 0.36 | 0.40 | 0.04 | −77.9 |
C(1)–H(1)⋯O(03) | 0.06(03) | 0.71(1) | 0.06 | 1.17 | 1.49 | 0.04 | −0.03 | 0.01 | −5.8 |
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Interactions outside the asymmetric unit | |||||||||
O(01)–H(01)⋯O(03)a | 0.17(23) | 4.66(29) | 0 | 0.55 | 1.18 | 0.26 | 0.19 | 0.07 | −37.2 |
O(01)–H(01)⋯O(02)a | 0.08(2) | 0.99(1) | 0.24 | 1.15 | 1.41 | 0.06 | 0.04 | 0.1 | −8.7 |
C(1)–H(1)⋯O(02)b | 0.07(12) | 1.68(3) | 0.12 | 0.81 | 1.35 | 0.09 | 0.06 | 0.03 | −11.7 |
N(1)–H(1A)⋯O(2)a* | 0.21(22) | 4.35(22) | 0.02 | 0.59 | 1.15 | 0.26 | 0.22 | 0.04 | −43.2 |
C(6)–H(6B)⋯O(04)c | 0.05(3) | 0.79(1) | 0.37 | 1.01 | 1.49 | 0.04 | −0.03 | 0.01 | −20.8 |
C(02)–H(02B)⋯O(1)c | 0.05(1) | 0.70(1) | 0.13 | 1.07 | 1.49 | 0.04 | −0.03 | 0.01 | −5.2 |
C(7)–H(7C)⋯O(01)d | 0.05(2) | 0.62(1) | 0.39 | 1.17 | 1.49 | 0.04 | −0.03 | 0.01 | −4.7 |
There are three hydrogen bonds present in THEO: two are carbon donated hydrogen bonds that are weak and ‘non-classical’ that fit the definitions of Munshi et al. and Koch et al.48,49 These bonds offer minimal packing stabilization to the system but create the curved packing arrangement, shown above in Fig. 3(a). The two carbon donated hydrogen bonds have minimal contribution to the overall stability of THEO. The remaining hydrogen bond N(1)–H(1A)⋯N(2) is ‘classical’ with a strong interaction energy (−88.54 kJ mol−1). It has previously been shown that nitrogen based hydrogen bond systems with near identical Donor-Atom–Hydrogen-atom–Acceptor-Atom-Angles (DHAA°) result in stronger hydrogen bond energies.50 To examine if this was the case in THEO, the ∇2ρ was analyzed to find the (3,−3) critical point for the N(2) lone pair of electrons (LP) and the coordinates of the critical point were then reviewed in mercury.37 It was found that the LP of N(2) are located at 177.36° from the D–H, N(1), and the bond is almost linear, with a DHAA° of 178.25°, in agreement with previous findings.12,51,52 The bond is represented below in Fig. 5, in which the −∇2ρbcp contour plot clearly shows the linear direction of the bond, with the trajectory of H(1A) aligning with the LP of N(2)*. For THEO, the summed total of the topologically-derived hydrogen bond strengths suggests that a further −34.7 kJ mol−1 of stabilisation occurs from hydrogen bonding in THEO compared to the ‘UNI’ energies.
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Fig. 5 −∇2ρ contour plot of the N(1)–H(1A)⋯N(2)* hydrogen bond, * = symmetry operator: −x + 3/2, y − 1/2, z − 1/2. Plotted along C(5)–N(1)–C(1)* plane. |
In MA, seven hydrogen bonds were identified, in agreement with previous charge density studies.40 Three hydrogen bonds are weak, two of which are the ‘non-classical’ hydrogen bonds from the methylene group, H(02A) and H(02B). These bonds introduce approximately −3.0 kJ mol−1 to the stabilisation of MA.40 The remaining hydrogen bonds stem from the carboxyl regions alone; these four hydrogen bonds consist of two homosynthons, O(01)–H(01)⋯O(02) and vice versa, and O(04)–H(04)⋯O(03), and vice versa. These homosynthon bonds are strong, corresponding to the ‘classic’ nature of the hydrogen bonds, with topologically derived strengths of −51.56 and −47.05 kJ mol−1, for O(01)–H(01)⋯O(02) and O(04)–H(04)⋯O(03), respectively. The last hydrogen bond is O(04)–H(04)⋯O(04), in the 2 − x,−y,−z plane. This bond is weak compared to the homosynthon mentioned above, as it is formed in a charge depleted region on the oxygen atom. This bond provides −11.67 kJ mol−1 of stabilisation to the MA lattice. Overall, the summated strengths of these hydrogen bonds are close to the ‘UNI’ strengths above with the summed topological values being −10.75 kJ mol−1 higher.
For (1) all previously reported 10 hydrogen bonds were identified topologically.53 A triangular bifurcated hydrogen bond system was identified between MA moieties in (1) (Fig. 6(a)). The −∇2ρ contour plot shows the carbonyl oxygen of O(02)'s LP being repulsed to 108° by the adjacent MA's O(O1). The valence shell charge concentration (VSCC) indicates that both carbonyl oxygen atoms are charge deplete, (∇2ρ < 0). This creates the trajectory for the hydrogen bonds between O(03)⋯H(01)*–O(01)* and O(02)⋯H(01)*–O(01)*, making up two sides of the triangle. The last side of the triangle is created by a contact between the carbonyl oxygens of O(02) and O(03) of MA where the −∇2ρ collide with the positive curvature of the ∇2ρ from the perpendicular O(01)*. This creates a ring critical point (RCP) with the −x + 3/2, y + 1/2, −z + 1/2 MA. The gradient vector field of ρ plot, Fig. 6(b), indicates the direction of the maximum ρ leaving the nucleus of each atom. This is a useful feature here, as it clearly shows where the atomic boundaries collide with an alternative atoms' trajectory along the zero-flux surface. Fig. 6(b) clearly reveals the critical points between atoms forming the triangle as represented by the collision lines that resemble the cross sections of the triangle. The estimated hydrogen bond strengths are −37.2 kJ mol−1 and −8.7 kJ mol−1 for O(03)⋯H(01)*–O(01)* and O(02)⋯H(01)*–O(01)*, respectively. The variation in the hydrogen bond strengths are due to the direction of the LP elections to the BCP, in this case the O(03)⋯H(01)*–O(01)* bond forms the more direct BCP as clearly indicated in the −∇2ρ contour plot.
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Fig. 6 EXP contour (a) −∇2ρ and (b) trajectory gradient of ρ contour diagrams of bifurcated triangular bond formation in (1). X7_AtomLabel = symmetry operator: −x + 3/2, y + 1/2, −z + 1/2. In (b) the X indicates the locations of bond formation.54 |
An antiparallel aromatic cycle stack was identified topologically in (1). It is formed by the symmetrical contact between C(1)⋯N(2). This creates a RCP with two linking points, ρring 0.017e Å−3, and ∇2ρring 0.2 e Å−3. Waller et al. calculated validated energies for aromatic cycle stacking systems, based on the ρring and the number of linking points.55 Using these methods the interaction energy provided by the aromatic cycle stack in (1) is estimated to be 9.7–12.9 kJ mol−1.55
There are two synthons within the hydrogen bonds present in (1). Synthon-1 (defined above in geometry) between carboxylic acid of MA and the imidazole of THEO, and Synthon-2 between the imidazole and pyrimidine of THEO (defined above in geometry).8
Synthon-1 makes a ring system that is the primary hydrogen bonding arrangement maintaining (1). The hydrogen bonds making Synthon-1 are O(04)–H(04)⋯N(2) and C(1)–H(1)⋯O(03). O(04)–H(04)⋯N(2) is shorter and more linear compared to the C(1)–H(1)⋯O(03), (2.65 Å, 171.3°, and 3.2 Å, 116.2° respectively). Synthon-1 is formed by a strong and a weak bond, with strengths of −77.9 and −5.8 kJ mol−1 for O(04)–H(04)⋯N(2) and C(1)–H(1)⋯O(03), respectively. The hydrogen bond strengths in the Synthon-1 vary significantly, this is because they are different hydrogen bond types ‘classical’ and ‘non-classical’, respectively.56 Synthon-2 is created by symmetrical N(1)-H(1A)⋯O(2) hydrogen bonds. The synthon is stabilised by a near-linear DHAA° of 171.1° and bond length of 2.70 Å of N(1)–H(1A)⋯O(2). Synthon-2's hydrogen bonds are strong, with strengths of −43.2 kJ mol−1 for N(1)–H(1A)⋯O(2). The strength of the N(1)–H(1A)⋯O(2) is caused by the relationship of N(1)–H(1A)⋯O(2) and N(1)–H(1A)⋯LP angles, which are near linear. The DHAA° and DH-LP differ by only 2° (172° vs. 174°, respectively), this creates the two strong hydrogen bonds, aligning with previous topological experiments.1,12,39,52,57 Fig. 7 shows the −∇2ρ contour plots of the Synthon-1 and Synthon-2. For Synthon-1 the contour plot show the LP of N(2) being heavily polarised towards H(04), and in Synthon-2 the LP of O(2) is clearly being directed towards the H(1A). This makes it clear that the DHAA° and DH-LP relationship is a reliable indicator of potential hydrogen bond direction and strength.50,51,58
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Fig. 7 Contour −∇2ρ diagrams of (a) Synthon-1. Symmetry operator: x, y, z and (b) Synthon-2 in (1) with X6_AtomLabel is Symmetry operator: x + 3/2, y + 1/2, −z + 1/2.54 |
For (1) the remaining hydrogen bonds are all classified as weak ‘non-classical’ hydrogen bonds, with strengths ranging from −4.7 to −11.67 kJ mol−1.44 Although individually the hydrogen bonds are weak, when summed together they provide −26.96 kJ mol−1 stabilisation to the asymmetric unit. Bernstein et al. discussed the role of ‘non-classical’ hydrogen bonds in crystal packing, highlighting the importance of these bonds to create staggering of the hydrogen bonds throughout the crystal lattice.7 In (1), 22% of the hydrogen bonds are ‘non-classical’, this is less than what was seen in CAF:GLU (∼70%, in both polymorphs).12 In the case of CAF:GLU a single weak ‘non-classical’ hydrogen bond was the cause of the stability differences seen in the polymorphs noting the importance of the weak hydrogen bonds to give depth in the packing arrangement.12 As discussed in geometry, the planar shape of MA and THEO in (1) limits the number of these staggered hydrogen bonds able to form. Hence, it results in limited packing diversity, which is why THEO:MA did not improve the hygroscopic stability of THEO in (1). It also highlights that the minimal geometric change of MA in (1) results in the equal redistribution of the EDD in hydrogen bond formation between reactant and products. Lastly, the summed topological hydrogen bond strengths found for (1) were in good agreement with the values derived from the ‘UNI’ method. The topological summed hydrogen bond strengths were a further −35.1 kJ mol−1 more stable than the ‘UNI’ method (−258.3 and −223.1 kJ mol−1, respectively). Interestingly, the summed total of THEO and MA ‘UNI’ method intermolecular potential values correlate more closely (4.1 kJ mol−1) to the experimental topological findings (−254.2 and −258.3 kJ mol−1, respectively). This correlation of the ‘UNI’ method is useful for further crystal engineering as it is a simple way to predict whether the process of combining two compounds may form a better crystal. Reviewing the chemical reaction process with the values from the topological studies;
THEO(s) + MA(s) → THEO:MA(s) |
−182.83 kJ mol−1 + −116.85 kJ mol−1 → −258.3 kJ mol−1 |
Shows a net decrease in the stability of (1) by +41.38 kJ mol−1 on experimental hydrogen bond energies. This corresponds with the ‘UNI’ method, and the findings of Trask et al.8 It is probable that the number of hydrogen bonds remaining equal between the reactants (THEO and MA) and products [(1)] forces a net equal redistribution of the EDD, with no further enhancement of stability compared to THEO as seen experimentally in the hydration studies.8
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Fig. 8 Molecular electrostatic potential maps of THEO, (a) and (1), (b) mapped on an isosurface of ρ. Plots generated at ±0.5e isoelectron density NB: in (1) H(02A) is out of plane.61 |
Another method to evaluate whether there was net equal EDD redistribution in the reaction of THEO(s) + MA(s) → THEO:MA(s) is to consider the atomic charges as fragments.62 This can be performed using the Bader charges found by integration of the zero-flux surface, and summing the charges for the atoms confined to a fragment. The fragments are defined by chemical components, i.e., a section that would have individual bonding abilities. This results in the imidazole and pyrimidine being separated for THEO, and MA remaining a single fragment due to its symmetrical structure, these fragments are summarised in Table 6.
From Table 6 it is evident that combining THEO with MA (1) results in a near identical magnitude of atomic charge in the imidazole fragment. However, it is in opposite directions, this charge shift occurs in (1) due to forming both Synthon-1 and -2. The total charges across the system follow the trend seen in the ESP plots and hydrogen bonding section indicating that overall, no net charge change occurs. This suggests two possible outcomes when water interacts with (1). (1), that both THEO and (1) have the same electronic potential to react with incoming water molecules and both hydrate at a similar rate or, (2) that upon water contact with (1) the weak interactions between THEO:MA are outcompeted causing the reverse reaction back to the reactants [THEO:MA → THEO + MA], resulting in the identical hydration rates seen experimentally as (1) is behaving as THEO.8
Method | Functional and basis set | Lattice energy (kJ mol−1) | |
---|---|---|---|
THEO | CE | B3LYP/6-31G(d,p) pair-wise corrected | −139.7 |
MA | CE | B3LYP/6-31G(d,p) pair-wise corrected | −125.4 |
(1) | CE | B3LYP/6-31G(d,p) pair-wise corrected | −267.6 |
The lattice energies show that (1) is equally stable to THEO with an energy difference of −2.5 kJ mol−1. This difference is so small it could be attributed to experimental error in the wavefunction calculation. This data like the ‘UNI’ method indicates that the MA addition did not improve the stability of THEO to THEO:MA. The near identical lattice energies also follow the findings of Taylor et al., where most API:CF combinations have limited change in overall stability (average of 8 kJ mol−1).63 However, using this process it was noted that the reported lattice energies for the Triclinic polymorph of THEO:MA may not truly reflect the crystals relative stability. In turn, the new lattice energy for the Triclinic THEO:MA is −231.7 kJ mol−1, suggesting a decrease in the stability compared to THEO of 21.1 kJ mol−1, and it is less stable compared to (1) by 35.9 kJ mol−1.31 These results may suggest the Triclinic polymorph is a metastable intermediate of (1), which has been seen previously for methylxanthines in the case of CAF:GLU.11,12,64 Another method to review stability is comparing molecular dipole moments (MDMs). The MDM is enhanced in the crystal state and indicates the likely hood of reacting with a polar solvent (water in this case), the higher the MDM the more reactive the molecule is in presence of a polar solvent. Logically, to compare THEO to THEO:MA it is important to compare the MDM across THEO alone. In this case it is 9.19 D for THEO and 3.02 D in (1) (MA is 6.5 D and MA in (1) is 4.0 D). This suggests combining THEO with MA results in a subtle lowering of the MDM. This indicates that when (1) interacts with a polar solvent i.e. water it may react less rapidly, but physical testing would be required to confirm this.
The lattice energies alongside the MDMs above indicate that THEO when combined with MA did not change the stability of (1) compared to THEO. The results follow the findings from Trask et al. experiments, where the cocrystal of (1) responded in the same way as THEO throughout humidity testing.8
Footnotes |
† Electronic supplementary information (ESI) available: Crystallographic data, topological findings, atomic charges. The CIF data for (1). CCDC 2119968–2119969 and 2106513 for THEO, MA and (1). For ESI and crystallographic data in CIF or other electronic format see https://doi.org/10.1039/d1ra08389a |
‡ Current address: Biomedicine, School of Medicine, Emory University, Atlanta, Georgia, USA. |
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