Robert C.
Dickson
a,
Troy D.
Manning
a,
Edwin S.
Raj
b,
Jonathan C. S.
Booth
b,
Matthew J.
Rosseinsky
a and
Matthew S.
Dyer
*a
aDepartment of Chemistry, University of Liverpool, Crown Street, L69 7ZD Liverpool, UK. E-mail: msd30@liverpool.ac.uk
bJohnson Matthey Technology Centre, Sonning Common, Reading RG4 9NH, UK
First published on 14th June 2022
Exploration of chemical composition and structural configuration space is the central problem in crystal structure prediction. Even in limiting structure space to a single structure type, many different compositions and configurations are possible. In this work, we attempt to address this problem using an extension to the existing ChemDASH code in which variable compositions can be explored. We show that ChemDASH is an efficient method for exploring a fixed-composition space of spinel structures and build upon this to include variable compositions in the Mn–Fe–Zn–O spinel phase field. This work presents the first basin-hopping crystal structure prediction method that can explore variable compositions.
The problem of predicting stable solid solutions can be reduced to finding structures which lie on the energetic convex hull. Structures that lie on the convex hull are predicted to be stable at 0 K. Structures that lie above the convex hull are denoted as metastable and may be thermally accessible above 0 K. However, testing all compositions and configurations along a solid solution line can be a computationally intensive task involving many structures. Different approaches to this problem including genetic algorithms,26,27 basin-hopping,28 meta-dynamics,29,30 simulated annealing31 and particle-swarm optimisation.32
One approach to reduce the massive phase space may be to restrict the search to a single crystal structure type such as the spinel group which has been studied in great detail. The spinel structure (shown in Fig. 1) consists of a close-packed system of anions (X = O, S, Se) with one-half of octahedral and one-eighth of tetrahedral sites occupied by cations giving a reduced formula of AB2X4 where A is a divalent cation and B trivalent.
Spinels can be disordered over cationic sites by having some of the B3+ cations in tetrahedral rather that octahedral sites. The degree of inversion of a spinel describes the extent to which A2+ and B3+ cations occupy octahedral and tetrahedral sites respectively with the two extremities shown in Fig. 2. A fully normal structure has all occupied tetrahedral sites consisting of A2+ cations and all occupied octahedral sites consisting of B3+ cations. A fully inverse spinel structure has one-half of occupied octahedral sites filled with A2+ cations while the other half is filled with B3+ cations and all occupied tetrahedral sites are filled with B3+. It is of note that due to the two different species across the octahedral sites in the inverse spinel structure, that there are many possible cation configurations for a fully inverse spinel whereas there is only a single normal configuration. The inversion in spinels results in a very large number of possible configurations.
For a full cubic unit cell with formula A8B16O32, 24 cations are distributed across 16 octahedral and 8 tetrahedral sites. Using combinatorics there are total of possible cationic configurations. Although this calculation does not include symmetry, assumes unique elements and disregards the distribution of atoms over the tetrahedral sites, the result gives a sense of scale of the number of configurations that need to be considered to fully capture all possible configurations for a simple binary spinel. Table 1 shows the distribution of inversion for structures of a generic A8B16O32 unit cell generated by random swapping of cations and represents an upper bound of the number of structures. These many possible configurations are possible due to inversion of cations in the structure.
B3+tet atoms | Structure count | Percentage of structures |
---|---|---|
0 | 1 | 0.00173 |
1 | 7 | 0.0121 |
2 | 265 | 0.458 |
3 | 2462 | 4.26 |
4 | 10![]() |
17.4 |
5 | 19![]() |
33.5 |
6 | 17![]() |
30.5 |
7 | 7027 | 12.2 |
8 | 1005 | 1.73 |
Total | 57![]() |
100 |
Pilania and coworkers explore nearly 160000 spinel configurations in the Mg–Al–Ga–In–O phase field using a cluster-expansion based effective Hamiltonian. Of these, only 350 configurations are explored using DFT methods.33 This work gives an idea of the scale of DFT calculations that can reasonably be conducted for a given system.
Using DFT methods provides an accurate way to assess the stability of spinel materials but these calculations are computationally intensive and the number than can reasonably be conducted is limited. Therefore, an efficient method for choosing which structures to sample in the composition space is vital to keep the computational cost to a minimum.
One method for searching through configuration space is the ChemDASH methodology presented in the work of Sharp et al.28 ChemDASH uses a basin hopping algorithm to swap atoms in a structure in order to evolve the structure to lower energy configurations. One success using this methodology is presented by Gamon and coworkers as they explore the Li–Al–O–S phase field using ChemDASH, finding the new sulfide Li3AlS3.34 Vasylenko and coworkers also use ChemDASH to explore the Li–Sn–S–Cl phase space.35 These works require many runs at different compositions in order to thoroughly explore the phase space which comes with a sizeable computational cost. In the work presented herein, we advance the ChemDASH methodology to allow for multiple variable compositions to be explored in a single run and use this adapted methodology to explore the Zn–Mn–Fe–O spinel phase space.
The ChemDASH work cycle is summarised in Fig. 3. The processes that form this cycle can be reduced to the stages of initialisation, energy minimisation, local environment ranking, atom swapping and structure acceptance. A discussion of each of these stages is given in Note S1 (ESI†).
![]() | ||
Fig. 3 ChemDASH cycle flowchart showing start/end points (red), algorithm actions (orange), decision points (blue) and acceptance/rejection points (green). Figure adapted from Sharp et al.28 |
The end members in the Zn–Mn–Fe–O system have varying magnetic structures due to the nonmagnetic d10 Zn atoms. MnFe2O4 has the ferrimagnetic (FiM) Néel magnetic ordering (shown in Fig. 4a) whereas ZnFe2O4 and ZnMn2O4 are both antiferromagnetic (AFM) as shown in Fig. 4b. Mn3O4 as been shown to have a ferromagnetic ordering below 43 K.37
ΔEss = E(MnxZn1−x)Fe2O4 − (xEMnFe2O4 + (1 − x)EZnFe2O4) | (1) |
The variable composition is limited to the ZnFe2O4–MnFe2O4 (Mn2+) phase line as a test case although there is the possibility of Mn3+ replacing Fe3+ in the structure. This solid solution is shown to be stable in experimental works.44,45
For the benchmark, ChemDASH runs (without substitution) are performed on all compositions along the Mn2+ line (a total of 9 runs). Substitution runs are then compared against these pure swapping runs to analyse how effectively the substitution runs can explore both composition and configuration space. Starting at each end member in their fully normal (ground state) structure and their fully inverse configurations, ChemDASH substitution runs are performed with a maximum of 100 structures sampled where the substitution probability at a given step is set to 0.25, 0.5 and 0.75. This array of probabilities allows us to investigate how the modified algorithm explores the composition and configuration space. The vc-ChemDASH code has been released under the terms of the GNU General Public Licence, and the source code is available at: https://github.com/lrcfmd/vc-ChemDASH. Computational data is available at the University of Liverpool research data catalogue: https://datacat.liverpool.ac.uk.
More than 90% of structures shown in Fig. 6 have a low ΔEss not exceeding 40 meV atom−1. This shows that in general, compositions along this phase line are stable and at each composition there should be some degree of inversion at finite temperature. Although the magnetic structures of the intermediate compositions may not be the same as the true ground state solutions, the distribution implies that mixing of the two end members is a favourable reaction as the ΔEss is small across all compositions. Any magnetic structure that is lower in energy than those assumed here will only make this a more favourable reaction.
There is an obvious energy gap between the lowest energy structure at each composition and all other structures as shown in Fig. 6. From this figure it can be seen that this lowest energy structure for each composition is the fully normal spinel structure (as there are no tetrahedral Fe3+ atoms in each lowest energy structure). The small ΔEss predicted by ChemDASH for all normal spinel structures shows that these structures are predicted to be thermodynamically stable.
To confirm that the lowest energy structure at each composition does indeed correspond to a stable structure on the convex hull, we calculate the full Mn–Fe–Zn–O convex hull and show all energies in the ESI† (Table S1). The maximum energy difference between ΔEss and the convex hull energy is 1.8 meV atom−1. Although some compositions in the solid solution lie above the convex hull at 0 K, these structures are stabilised by the mixing entropy gained by having multiple elements present on the tetrahedral site. The temperature at which the mixing entropy term (ΔSmixT) is equal to the convex hull energy (Ehull) is shown in Fig. 7 and shows that each structure is stable at 298 K.
Two clear trends across compositions are evident in Fig. 6. The first is that in general, as the degree of inversion increases, the total energy of the system increases for all compositions. As the two end members are known to be most stable in their normal configurations, it is unsurprising that intermediate compositions follow the same trend. The second trend is that, as the proportion of Zn is increased, higher inversion structures become more stable than similar configurations at other compositions. This is most clearly visible when Fetet = 2 and 3 where there is a general decrease in energy going from left to right.
We can also for a set of randomly generated spinel structures, calculate a Boltzmann-weighted average degree of inversion as another way of modelling the thermally averaged degree of inversion. We calculate the energies of 100 randomly generated cationic configurations of the MnFe2O4 and ZnFe2O4 end members along with the intermediate composition Mn0.5Zn0.5Fe2O4. To get a thermally averaged degree of inversion for the three random sets of structures, we calculate a Boltzmann-weighted average inversion using eqn (2):
![]() | (2) |
The average degree of inversion for MnFe2O4 calculated from the directed swapping ChemDASH run (from Fig. 5) is calculated to be 24.6%. This is close to the widely accepted bulk experimental value of 20%48,49 and a much better estimate than that of the randomly generated structures with thermal averaging. The degree of inversion for ZnFe2O4 is calculated to be 50.5% which matches very well with a value of 50% reported by multiple studies50,51 when the inversion is calculated from the directed-swapping run. The ability to predict physically measurable experimental degrees of inversion with a relatively small sample of structures shows the strength of the combination of directed swapping with the Metropolis acceptance criterion in ChemDASH as applied to spinel materials.
The increasing inversion with Zn addition is corroborated by the experimental results of Sakuri et al. where it is found that in a mixed ZnFe2O4–MnFe2O4 spinel system, 44% of Zn atoms are in octahedral sites in contrast to the 11% of Mn atoms.52 We therefore show here that ChemDASH can be used to predict the degree of inversion for a single spinel composition that can be related to experimental results.
These results from the swapping only ChemDASH show that stable structures for each composition (restricted to those possible in the full unit cell) are readily accessible. For the relatively simple restricted system studied here nine ChemDASH runs are possible with reasonable computational resources, for more complex systems where both A and B cations can be doped out, running ChemDASH at every composition becomes unfeasible. Using a single ChemDASH run at each composition also neglects any relationship between compositions that are similar. The aim of the vc-ChemDASH methodology therefore aims to address both these points by using the relationship between compositions to study the phase space without having to study each composition separately.
For all runs, the energies of the structures do not exceed 35 meV atom−1 above the end members. This energy as compared with the thermal energy kBT corresponds to T = 406 K which is readily achievable with experimental set-ups. Our calculations use a temperature T = 298 K for the acceptance criteria (kT ≈ 25 meV atom−1). The probability of accepting a structure that is 25 meV atom−1 higher in energy that the previous structure is therefore e−1 ≈ 36.8%.
The low energy structure bias and the small average absolute differences in energies show that the algorithm is able to direct the searching of structures towards plausible low energy structures.
The high substitution regimes (Mn-0.75/Zn-0.75) in Fig. 8 a and b tend to find the ground state structure more often than the lower substitution regimes (Mn-0.25/Zn-0.25) when starting from the normal spinel configuration. This is understood from the normal spinel starting structure being the ground state for all compositions. The higher substitution regime is much more likely to attempt a substitution event at a given step, and therefore the high substitution runs accept many steps in a row finding the normal ground state structures at each composition. The consistent high acceptance rates of swapping (Table 2) implies that, in general, directed swaps either decrease the energy of the structure or increase the energy by only a small amount.
Substitution rate (%) | A Total (%) | A Sub (%) | A Swap (%) | |
---|---|---|---|---|
MnFe2O4 | 25 | 81.2 | 53.3 | 94.3 |
50 | 75.0 | 58.0 | 90.0 | |
75 | 59.2 | 50.7 | 92.6 | |
ZnFe2O4 | 25 | 84.2 | 52.0 | 98.7 |
50 | 71.6 | 41.5 | 91.5 | |
75 | 63.3 | 62.2 | 73.1 |
The drawback of using higher levels of substitution is clearly shown in Table 2 where the total acceptance rates quickly deteriorate as the substitution level is increased. The individual substitution and swapping acceptance rates are quite stable across different starting structures and substitution levels with substitution steps being much less likely to be accepted than swapping steps.
From the coloured trajectories in Fig. 8c and d it can be seen that the ground state structures are not only found at the start of the ChemDASH run. This is instructive as it shows that due to the bias towards lower energy structures, ground state structures for other compositions can be found after exploration of higher energy composition and configuration space. For each run it is clear that at the start of the run structures of higher energy tend to be sampled before the exploration settles to lower energy, middle composition structures.
Fig. 8e and f shows the number of Fe3+ ions in tetrahedral sites and serves as a direct measure of the total degree of inversion for each structure. The structures sampled tend to have low levels of tetrahedral Fe3+ with no structure sampled with more than half the tetrahedral sites occupied by Fe3+. There is an obvious trend of structures with higher degrees of inversion having high energies relative to the end members. When looking at the structures in the context of octahedral Mn and Zn, there is a preference for having octahedral Zn over octahedral Mn as structures tend to have lower energies (Fig. S1–S6, ESI†). Calculations starting from an intermediate composition (Mn4Zn4Fe16O32) yielded results that agree well with those presented in Fig. 8 and are shown in the ESI† (Fig. S7).
The structures with less than 5 Fe3+ in tetrahedral sites make up only 19% of all possible structures as shown previously in Table 1. The vc-ChemDASH runs only sample such low inversion configurations, excluding all others. This shows the real strength of the methodology where the structures sampled are focused on low energy regions of space and exclude any structures that are outside this. In the search for stable configurations, being able to exclude a vast region of high energy configuration space is of great use.
The advantage of allowing the composition to change throughout the ChemDASH run is that the feasibility of solid solutions to form between end members can be evaluated. The acceptance of a substitution event shows that in theory a solid solution of that composition should be synthesisable. The more readily substitution events are accepted, the more likely it is that a solid solution will form between the two compositions.
The samples of structures derived from the vc-ChemDASH runs can be mapped to the sample of structures generated from the standard ChemDASH runs where the same regions of configuration space are explored. Given we have already shown the power of ChemDASH in finding low energy structures relative to random swapping, we can conclude that the vc-ChemDASH methodology is a useful extension to ChemDASH for allowing the exploration of both compositional and configurational space. Although the phase space here is relatively simple in that there are only nine different compositions to consider, many chemical spaces are not as simple and could require many more compositions to be tested before adequately sampling the composition space. This extension to ChemDASH allows us to explore the compositional space adequately without resorting to individual ChemDASH runs for all compositions.
Comparison of the energies of the AFM and FiM runs are presented in Fig. 9c with relative energies defined relative to FiM normal MnFe2O4 and AFM normal ZnFe2O4. For all compositions except NZn = 7 or 8 the ground state structure is most stable in the FiM runs than the AFM runs. This shows a collapse of the AFM magnetic structure upon addition of a small amount of Mn to the unit cell. Looking at the whole collection of sampled structures shows that when any inversion is introduced, even for NZn = 7 or 8, structures have a lower energy in the FiM state than the AFM state.
Even with the higher and wider range of energies for the AFM runs, the sample of structures obtained from the AFM runs are similar to those of the FiM runs and the swapping-only runs. The acceptance rates for AFM runs are also very similar to those of FiM runs (Table S1, ESI†). Although the algorithm is robust to using different magnetic structures, it seems that for this system that the FiM set-up is a more appropriate choice to use for finding new spinel configurations and compositions.
An interesting observation is that due to the change in magnetic symmetry, the normal spinel configuration no longer has only one unique magnetic structure for any of the mixed composition spinels (i.e. excluding MnFe2O4 and ZnFe2O4). This is due to the two unique layers of tetrahedral sites that can either be between FM aligned octahedral layers or AFM aligned octahedral layers (see Fig. 4b). As mixing of the two end members reaches an equimolar mix of Mn and Zn, many unique normal structures are possible. When the magnetic structure is changed to the FiM structure, these unique structures collapse to the same equivalent structure. This is most clearly observed in Fig. 9a where multiple different normal spinels are observed for NZn = 2–5. An extensive discussion of magnetism in spinels is presented by Tsurkan and coworkers.53
The inverse structures at the start of each set of runs have much higher energies than the ground state (38.7 meV atom−1 for MnFe2O4 and 45.2 meV atom−1 for ZnFe2O4). As the run progresses, the energy of the structure decreases quite rapidly until only the lowest energy structures are sampled. In Fig. 10a and b, the trajectory clearly shows that for each run the energy of the system decreases as the run progresses and after 20 steps does not increase to an energy above 30 meV atom−1 with structures where Fetet > 4 no longer sampled. Across all 6 runs conducted starting from inverse structures, no substitution events are accepted directly from the initial structure. For MnFe2O4 and ZnFe2O4 starting runs, substitution steps are not accepted until cations are swapped to lower the energy to below 20 and 30 meV atom−1 respectively (relative to the ground state end members).
Across all substitution levels the energy of the system decreases as the run progresses. The Mn-0.25 and Mn-0.50 runs find the normal ground state structures for NZn = 4, 5. By finding the ground state, it is shown that the algorithm can start from the highest energy structure possible and evolve the system to find the lowest energy structure. The ground state is not found for the Mn-0.75, most probably due to the small number of swapping steps attempted in the 100 structure run. The true ground state is also not found starting from the inverse ZnFe2O4 structure although many structures with 1 tetrahedral Fe atom are found (Fig. 10). This suggests that more than 100 structures may need to be sampled in order to find the true ground state structure.
In Fig. 10c and d, the degree of inversion decreases very quickly with very few high inversion structures sampled. This shows the benefit of using the BVS method in ChemDASH to direct swaps away from high energy, high inversion structures to lower energy, low inversion structures. It is also informative that the majority of structures sampled starting from the inverse structures are in the same composition and configuration space as those of the normal-start runs. This shows that the structures sampled throughout the run are independent of the starting ionic configuration given sufficient steps for the run to equilibrate. The ability of the algorithm to operate well even when starting from high energy structures is essential for use in new and unknown phase spaces.
The radial distribution function (RDF) in Fig. 11 for metal–metal and metal–oxygen distances of all accepted structures starting from the normal FiM structures (as presented in Section 4.2) are shown in Fig. 11a and b. Fig. 11a shows the intermetallic distances for octahedral–octahedral (3.05 Å), octahedral–tetrahedral (3.55 Å) and tetrahedral–tetrahedral (3.70 Å) sites. The peaks at 3.05 Å and 3.55 Å highlight the abundance of Fe in octahedral sites while the peak at 3.70 Å highlights the abundance of Mn and Zn in tetrahedral sites. Fig. 11b shows a clear distinction between Zn atoms in octahedral (2.01 Å) and tetrahedral (2.14 Å) sites. The same observation can be made for the Fe–O bond lengths in tetrahedral (1.93 Å) and octahedral sites (2.05 Å). The octahedral site peak (2.05 Å) is dominant for Mn and the tetrahedral peak at 2.19 Å is barely resolvable.
A comparison of average bond lengths of each metal in octahedral and tetrahedral sites is shown in Fig. 11c and d. In general, the trend of M–O bond lengths holds where Mn–O > Zn–O > Fe–O for both octahedral and tetrahedral sites. There are however some clear outliers for the average octahedral and tetrahedral bond lengths. These outliers have smaller average Mn–O octahedral and larger Fe–O tetrahedral bond lengths than the majority of Mn and Fe sites and make up 4.3% of all structures sampled. To further investigate the origin of these outliers, the data was split into the majority of structures and the subset of outliers for subsequent analysis.
Looking at the magnetic moments of the minority subset shows deviations from the expected d5 Mn2+ and Fe3+ configurations. For each structure in the subset there is a coupling between an octahedral Mn and tetrahedral Fe resulting in a lowering of the overall magnetic moment of both the Mn and Fe. For all structures these sites are direct neighbours as shown in Fig. 13. The average magnitude of the magnetic moment for octahedral and tetrahedral Fe sites is 4.2 μB in the non-coupled sites. The average magnetic moment decreases significantly to 3.7 μB in the coupled subset. For Mn, the average magnitude of magnetic moments are 4.6 μB for octahedral and tetrahedral sites of the non-coupled structures. The average magnetic moment is again decreased for the coupled subset to 3.9 μB. The origin of this can be attributed to an oxidation of Mn2+ to Mn3+ and a reduction of Fe3+ to Fe2+.
The projected density of states for a representative coupled and non-coupled structure are presented in Fig. 12. Each structure has four Mn atoms and four Zn atoms and each has one Mn in an octahedral site. The octahedral Mn states in Fig. 12a show a single unoccupied low energy unoccupied state in the spin-up channel as would be expected in a d4 Mn3+ cation. The two high energy occupied states in the spin-up channel of the non-coupled structures (Fig. 12b) correspond to the two higher energy filled states in the high-spin d5 electronic configuration of Mn2+.
Fig. 12c distinguishes Fe2+ and Fe3+ in different tetrahedral sites and shows the difference in electronic density of states between the two sites. The Fe2+ site has a single high-energy occupied state as would be expected for a high-spin Fe2+ d6 cation. The Fe3+ tetrahedral site density of states in the coupled structure matched that of the tetrahedral Fe in the non-coupled structure (Fig. 12c) with no high-energy filled states in the spin-up channel. The distortion of the minority subset is therefore attributed to Jahn–Teller distortion of the Fe2+ and Mn3+ metal cations. This confirms the coupling nature of the subset of distorted structures allowing for some Mn3+ and Fe2+ to be present in the system.
Experimentally, there are various reports of the presence of Mn3+ and Fe2+ in the Mn–Fe–Zn–O spinel phase field. Harrison and coworkers54 determine for a sample of MnFe2O4 that approximately 7% of Fe is in the Fe2+ state and 17% of Mn is in the Mn3+ state. Ji and coworkers55 find a Zn-doped MnFe2O4 with a slight excess of Fe resulting in approximately 3% of Fe in the Fe2+ state with Ti4+ doping increasing the amount of Fe2+ up to 6%. Bonsdorf and coworkers56 find a temperature dependence for the Mn2+/Mn3+ ratio where high temperature processing forms Mn2+ exclusively. Their work however finds no existence of Fe2+ using Mössbauer spectroscopy. Carta and coworkers47 argue that in a pure sample of MnFe2O4, a highly inverted structure (≈70% inversion) is attributed to partial oxidation of Mn2+ to Mn3+. Antic and coworkers45 on the other hand show cation deficit Zn–Mn ferrites where they observe no Mn3+ but claim the presence of Mn4+. They also find Fe2+ in small quantities. These experimental reports suggest that the presence of Mn3+ and Fe2+ in Zn–Mn ferrite spinels is certainly possible but that this is strongly dependent on synthesis methods and conditions. It is noted that the orbital occupancies and magnetic moments calculated by the DFT+U approach used in our study will depend on the value of U used.57 Nevertheless, our results are consistent with experimental reports of the presence of Fe2+ and Mn3+ in members of this solid solution.
This section highlights the physical properties that can be obtained across an entire spinel phase space using the new vc-ChemDASH methodology. From this trends and properties such as inversion degree, cation charges, etc. can be determined before more refined ChemDASH calculations on specific compositions can be conducted. This new methodology therefore allows for broad properties of the spinel phase space to be predicted in a single ChemDASH calculation.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d2cp02180c |
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