Ibon
Alkorta
*a,
John M. C.
Plane
b,
José
Elguero
a,
Juan Z.
Dávalos
c,
A. Ulises
Acuña
c and
Alfonso
Saiz-Lopez
*c
aInstituto de Química Médica (CSIC), Juan de la Cierva, 3, E-28006 Madrid, Spain. E-mail: ibon@iqm.csic.es
bSchool of Chemistry, University of Leeds, LS2 9TJ Leeds, UK
cDepartment of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Rocasolano (CSIC), Madrid E-28006, Spain. E-mail: a.saiz@csic.es
First published on 25th May 2022
The potential reaction of the nitrate radical (NO3), the main nighttime atmospheric oxidant, with five alkyl halides, halons (CH2ClBr, CH2ICl, CH2BrI, CHCl2Br, and CHClBr2) has been studied theoretically. The most favorable reaction corresponds to a hydrogen atom transfer. The stationary points on the potential energy surfaces of these reactions have been characterized. The reactions can be classified into two groups based on the number of hydrogen atoms in the halon molecules (1 or 2). The reactions with halons with only one hydrogen atom show more exothermic profiles than those with two hydrogen atoms. In addition, the kinetics of the reaction of NO3 + CH2BrI was studied in much higher detail using a multi-well Master Equation solver as a representative example of the nitrate radical reactivity against these halocarbons. These results indicate that the chemical lifetime of the alkyl halides would not be substantially affected by nitrate radical reactions, even in the case of NO3-polluted atmospheric conditions.
The emission of halogen-containing organic compounds from the ocean into the atmosphere, and their subsequent chemistry, has for decades been of interest due to the role of these species in atmospheric ozone destruction.7,8 The main atmospheric removal processes of alkyl halides include their reaction with OH and photolysis3,9 while the nighttime chemistry of many of these organohalogens is less well understood. Assessment of the atmospheric impact of these species requires knowledge of the reaction rates and mechanisms of their degradation chemistry during both the day and at night. Here, the reactivity of NO3 with five alkyl halides, halons (CH2ClBr, CH2ICl, CH2BrI, CHCl2Br, and CHClBr2), is studied using ab initio computational methods. These halons have atmospheric lifetimes ranging from hours to days. Their atmospheric degradation leads to the release of very reactive halogen atoms, which initiate catalytic ozone destruction cycles both in the troposphere and the stratosphere.
The three potential reactions indicated in Scheme 1 are considered for the five alkyl halides. In the first reaction (I), there is a hydrogen transfer from the alkyl halide towards the NO3 radical with the formation of nitric acid (HNO3). In the second reaction (II), a halogen atom is transferred with the formation of halo-nitrate derivatives. In the last equation process (III), a SN2 type reaction happens with formation of a methyl nitrate derivative and a halogen radical.
Scheme 1 Potential reactions of the halons with NO3. In this study, X and Y atoms are halogens (Cl, Br and I) and Z can be a halogen or a hydrogen atom. |
The UM08HX/6-311+G(2df,2p) computational level has been shown to provide excellent performance when compared to the balanced multicoefficient method based on coupled cluster theory with single and double excitations (BMD-CCSD) computational level in the description of TSs and radical reactions.14,15 In addition, we have compared the results obtained by Bai et al.16 at the CCSD(T)//B3LYP level of theory for the pathways yielding CH2I + HNO3 with those obtained at M08HX and DLPNO-CCSD(T)/M08HX levels used here, showing that in the last case a better agreement with the experimental data would be attained [see Table S1 of the ESI†].
The potential complexes formed by the pre-reactive molecules and the products were explored using a combination of meta-dynamics, molecular mechanism and optimizations with the CREST program.17 The unique minima provided by the CREST method were then used as a starting point for additional optimization with the UM08HX/6-311+G(2df,2p) computational level. The resulting geometries were compared in order to remove repeated minima and ranked based on their energy.
The binding energy of the complexes has been calculated as the electronic energy difference between the complexes and the isolated optimized monomers. No zero point energy correction has been taken into account for the computation of this parameter and the potential energy surfaces.
The molecular electrostatic potential (MESP) was calculated with Gaussian-16. The Multiwfn program18 has been used to locate the extreme (maxima and minima) of the MESP function on the 0.001 a.u. electron density isosurface. The MESP and the extreme values have been represented with the Jmol program.19
The electron density of the systems was analyzed within the quantum theory of atoms in molecules (QTAIM)20,21 theory with the AIMAll program.22 The analysis of the electron density shows points of null gradient that can be classified based on the sign of their curvature in nuclear attractors (3, −3), bond critical (3, −1), ring critical (3, +1) and cage critical points (3, +3). The value of the second derivative (i.e., the Laplacian), of the bond critical points provides important information regarding the nature of the interaction i.e. covalent or weak interaction.
The kinetics of each pathway and the rate coefficient of the NO3 + CH2BrI reaction were calculated using the Master Equation Solver for Multi-Energy well Reactions (MESMER) program.23 Each intermediate species formed during the reaction was assumed to dissociate back to the reactants or forward to the products, or be stabilized by collision with the N2 third body. The internal energy of each intermediate was divided into a contiguous set of grains (width = 70 cm−1) containing a bundle of rovibrational states. The density of these states was calculated using the theoretical vibrational frequencies and rotational constants, without making a correction for anharmonicity and using a classical treatment for the rotational modes.24 Reaction across the barrier between the pre- and post-reaction complexes involves an H-atom transfer, and so an Eckart tunneling correction (with an asymmetric barrier) was applied to the rate calculated using Rice–Ramsperger–Kassel–Markus (RRKM) theory.23
Each grain was then assigned a set of microcanonical rate coefficients for dissociation to reactants or products (as appropriate), which were determined using inverse Laplace transformation to link them directly to the corresponding capture rate coefficients.23 The capture rate coefficient for NO3 + CH2BrI was calculated using long-range transition state theory.25 In this case the dispersion force dominates over the dipole–dipole and dipole-induced dipole forces; the C6 coefficient was estimated using the London formula with theoretical ionization energies [IE(NO3) = 13.7 eV; IE(CH2BrI) = 9.25 eV] and volume polarizabilities [α(NO3) = 5.15 × 10−30 m3; α(CH2BrI) = 12.5 × 10−30 m3] determined in the present study. The resulting capture rate coefficient, increased by a factor of 1.3 to account for the less significant forces,25 is 8.1 × 10−10 exp(−400/T) cm3 molecule−1 s−1. The capture rate coefficient of HNO3 + CHBrI (which is required to compute the dissociation rates of the post-reaction complexes to the products) was set to 7.0 × 10−10 exp(−400/T) cm3 molecule−1 s−1.
The probability of collisional transfer between grains was estimated using the exponential down model.24 The average energy for downward transitions, 〈ΔE〉down, was set to 300 cm−1 for N2 with a slight positive temperature dependence.24 The probabilities for upward transitions were determined by detailed balance.24,26 The Master Equation, which describes the evolution with time of the adduct grain populations, was then expressed in matrix form and solved to yield the rate coefficients for bimolecular reaction to HNO3 + CHBrI, and/or recombination to the pre- or post-reaction complexes, at a specified pressure (1 bar) and temperature (230–400 K).
Reactiona | CH2ClBr:NO3 | CH2ClI:NO3 | CH2BrI:NO3 | CHCl2Br:NO3 | CHClBr2:NO3 |
---|---|---|---|---|---|
a See Scheme 1. b The X halogen that forms the NO3X molecule is the lighter of the halogens in the molecule. c The X halogen that forms the NO3X molecule is the heaviest of the halogens in the molecule. d The X (radical) formed corresponds to the lighter halogen in the molecule. e The X (radical) formed corresponds to the heaviest halogen in the molecule. | |||||
I | −58.2 | −57.1 | −53.6 | −74.0 | −73.4 |
IIb | 140.5 | 140.2 | 121.7 | 113.7 | 114.7 |
II′c | 118.5 | 60.0 | 63.7 | 91.4 | 92.4 |
IIId | −39.6 | −37.2 | −80.9 | −37.5 | −32.8 |
III′e | −84.4 | −151.6 | −150.4 | −84.9 | −84.4 |
From the values listed in Table 1 and Table S5 (ESI†), it is clear that the hydrogen transfer from the alkyl halides towards NO3 (Reaction I, Scheme 1) and the SN2 attack of NO3 to the halon (Reaction III, Scheme 1) are favorable exothermic processes while the halogen transfer (Reaction II, Scheme 1) is endothermic in all cases. These results are a consequence of the balance between the strength of the bonds that are broken and formed. It is clear that the NO3–H bond is much stronger than the C–H in the halons while the opposite is the case between the NO3–X and C–X bonds, in agreement with the available experimental bond dissociation energies (Table S3, ESI†). In the same way, the CH bond of those halons with three halogen atoms (CHCl2Br and CHClBr2) is more acid than the CH bond of those with only two halogens (CH2ClBr, CH2ClI and CH2BrI); consequently, the hydrogen transfer is more favorable in the former case than the latter one. The relative energy of the exit channel in Reaction III depends on the leaving halogen atom. Values around −37 kJ mol−1 are found when chlorine is the leaving halogen, −84 when it is bromine and −150 when it is iodine. Based on these results, the rest of the present work will be focused on the study in detail of the species involved in the hydrogen transfer and on the SN2 attack of NO3 to the halon.
The molecular electrostatic potential (MESP) results in the NO3 (radical) present positive regions above and below the nitrogen atom with a maximum value of 0.058 a.u. and negative regions corresponding to the lone pairs of the oxygen atoms (−0.014 a.u.). The halon molecules show positive values associated to the hydrogen atoms and in the extension of the C–X bonds (σ-hole).27 In all cases, the positive values associated with the hydrogen atoms are larger than those associated with the halogen σ-hole. The two systems with three halogen atoms show more positive values around the H atoms (0.053 au) than those with only two halogens (0.045 au), in agreement with previous reports indicating the increasing acidity of the C–H bond with the number of halogen atoms in the methane derivatives.28 Negative regions are found associated with the lone pairs of the halogen atoms.
The CREST method provides between 7 and 18 conformers for each of the pre-reactive complexes. The number of unique conformers is reduced to 6 when they are re-optimized using the M08-HX method. The molecular graphs of the most stable conformation for each complex are shown in Fig. 2, and all of them are listed in Table S4 (ESI†).
The pre-reactive complexes show modest binding energies, the most stable complexes for each case yield binding energies between −33 and −20 kJ mol−1 (Table 2). In the case of the relative free energies, the values obtained are positive (approximately +54 kJ mol−1 at 298 K) (Table S5, ESI†) due to the effect of the entropy. The presence of iodine enhances the capability of the systems to form complexes with NO3. Thus, the strongest complexes of CH2ClI and CH2BrI yield binding energies of −33 kJ mol−1, while for the other halocarbons they are between −21 and −20 kJ mol−1.
CH2ClBr:NO3 | CH2ClI:NO3 | CH2BrI:NO3 | CHCl2Br:NO3 | CHClBr2:NO3 | |
---|---|---|---|---|---|
a Most stable conformer in each complex. | |||||
# Conformers CREST | 18 | 9 | 7 | 7 | 8 |
# Conformers M08-HX | 6 | 6 | 6 | 6 | 6 |
E b | −21.7 | −32.6 | −32.7 | −20.3 | −20.3 |
The disposition of the molecules in the pre-reactive complex minima and the AIM analysis (Table S4, ESI†) indicate that in the most stable conformation the two molecules are mainly attracted by the interaction between the oxygen atoms of NO3 and the halogen and hydrogen atoms of the halons. In general, a large variety of interactions are observed in the minima found as tetrel bonds29–32 between the lone pair of the oxygen atoms of NO3 and the carbon atom of the halons, and pnicogen bonds33–35 between the lone pairs of the halogens and the nitrogen of NO3. It is interesting that in the complexes with iodine, all the minima show intermolecular bond critical points between the iodine atom and one of the oxygen atoms of NO3.
Fig. 3 Molecular graph of the three TS conformers of the hydrogen transfer NO3 + CH2BrI reaction. The location of the BCPs and RCPs are indicated with small green and red dots, respectively. |
The relative energies of these TSs are given in Table 3 and Table S5 (ESI†). In general, the relative electronic energies are between +12 and +17 kJ mol−1 with respect to the entrance channel. In the case of the relative free energies, the values obtained are around +55 kJ mol−1 at 298 K.
Conformer | NO3:CH2ClBr | NO3:CH2ClI | NO3:CH2BrI | NO3:CHCl2Br | NO3:CHClBr2 |
---|---|---|---|---|---|
A | 17.3 | 16.0 | 14.8 | 13.8 | 11.7 |
B | 17.2 | 15.2 | 14.2 | 13.7 | 11.7 |
C | 16.7 | 14.7 | 13.3 |
More detailed analysis shows that the relative electronic energy of the TS (Table 3) decreases as the number and size of the halogen atoms increases. Thus, in the halons with two halogen atoms the lowest barriers are 16.7 > 14.7 > 13.3 for CH2ClBr, CH2ClI and CH2BrI, respectively, compared with 13.7 and 11.7 for CHCl2Br and CHClBr2, respectively. In those cases where the halon molecule has two hydrogen atoms, the most stable TS conformer has an H-atom in anti disposition (conformation C in Fig. 3). In addition, for each system the longest C–H distance in the TS corresponds with the smallest barrier.
The number of configurations obtained with CREST and further re-optimized with the M08 DFT method is larger than in the case of the pre-reactive complexes (see Table 4). The binding energies of the most stable complex for each halon with NO3H are very similar, ranging between −22.2 to −23.5 kJ mol−1. Thus, the energy of the complexes formed is almost independent of the halogen atoms present in the halons.
The molecular graphs of the most stable configurations of each conformer are shown in Fig. 4, and their molecular parameters are listed in Table S7 (ESI†). In the two most stable minima for each complex, three common features are observed: an OH⋯X hydrogen bond, an oxygen–X interaction and a tetrel bond with the single electron hole (O⋯C interaction). In the rest of the conformations, other interactions such as weak CH⋯O hydrogen bonds, pnicogen O⋯N and OH⋯C bonds are observed.
Fig. 4 Molecular graph of the most stable conformation of each complex upon hydrogen transfer. The binding energies with respect to the isolated monomers are indicated. |
The potential and free energies of these complexes are negative with respect to the entrance channel (Table 4, Table S5 (ESI†) and Fig. 5). In general, the systems can be divided in two groups, those with a hydrogen atom in the resulting radical of the halon and those without it. In the former, the energies are smaller in absolute value than in the latter ones. Thus, the relative electronic energies of the most stable conformers of NO3H:CHClBr, NO3H:CHClI and NO3H:CHBrI complexes are between −77 and −81 kJ mol−1 while those of NO3H:CCl2Br and NO3H:CClBr2 are −96 kJ mol−1. Something similar occurs with the free energies that are around −33 and −45 kJ mol−1 at 298 K, for the two families of complexes mentioned before.
Fig. 5 Profiles of the relative electronic energy (left-hand panel) and Gibbs energy (right-hand panel) for the NO3 + CH2BrI (black) and NO3 + CHCl2Br (blue) reactions. |
Reaction/conformer | NO3:CH2ClBr | NO3:CH2ClI | NO3:CH2BrI | NO3:CHCl2Br | NO3:CHClBr2 |
---|---|---|---|---|---|
a The X (radical) formed corresponds to the lighter halogen in the molecule. b The X (radical) formed corresponds to the heaviest halogen in the molecule. | |||||
III-Aa | 170.0 | 120.3 | 96.4 | 182.2 | 185.7 |
III-Ba | 145.8 | — | — | 175.4 | 179.0 |
III′-Ab | 150.5 | 69.5 | 74.1 | 161.1 | 164.6 |
III′-Bb | 108.3 | 118.6 | 70.8 | 153.3 | 139.2 |
In all cases, the reactions where the leaving group is the largest halogen atom show smaller barriers than when it is the smaller halogen atom. In any case, the calculated barriers for these reactions are much larger than the corresponding for the hydrogen transfer previously mentioned. The smaller differences are for the NO3:CH2ClI and NO3:CH2BrI reactions where the SN2 reaction barriers that produce iodine radical atom are 55 and 58 kJ mol−1 larger than the corresponding hydrogen transfer. Thus, even though the product of these reactions (Table S9, ESI†) is more stable than in the hydrogen transfer process, the larger difference in the barrier should favor the hydrogen transfer path in kinetic conditions as those found in the atmosphere.
The hydrogen-atom transfer reaction between NO3 and CH2BrI presents three pathways associated with different transition states (A, B and C), as shown in Fig. 3. These involve the formation of a NO3–CH2BrI pre-reaction complex, H-atom transfer over a barrier to form a post-reaction complex, followed by dissociation into HNO3 and CHBrI (Fig. 5). The conformation of the pre-reactive complexes corresponds to those ranked as #1, #5 and #6 in the conformational search detailed in Section 3.2. In the same way, the post-reaction complexes associated with the three pathways are those ranked as #8, #7 and #10 in Section 3.4. The rotational constants and vibrational frequencies of the stationary points on the potential energy surface (i.e. reactants, products and intermediates) used in the MESMER calculation are listed in Table S10 (ESI†).
At a pressure of 1 bar (i.e. at the Earth's surface), recombination to the intermediate complexes does not compete with reaction, even at the lowest temperature of 230 K (−43 °C). This is because the pre-reaction complexes are relatively weakly bound with respect to the reactants (Fig. 5); furthermore, if the reaction does pass over the barrier then the post-reaction complex is unbound with respect to the products, because of the significant exothermicity of the overall reaction. Fig. 7 is an Arrhenius plot of the overall reaction. This shows that pathway C, which has the lowest barrier, contributes 48% to the total reaction rate at the lowest temperature of 230 K. However, at 400 K the contributions from the three pathways are very similar.
The overall reaction rate coefficient is given by k (230–400 K) = 1.79 × 10−13 exp(−1516/T) cm3 molecule−1 s−1. The relatively small pre-exponential factor results from the relatively tight transition states of the three pathways. At 298 K, k = 1.1 × 10−15 cm3 molecule−1 s−1. In a relatively polluted environment where the NO3 mixing ratio was 50 ppt (i.e. a concentration of 1.2 × 109 cm−3),40 the lifetime of CH2BrI due to NO3 reaction would be 209 hours. This is much longer than the annually averaged tropospheric lifetime (∼4 hours) of this alkyl halide against photolysis lifetime.9
The hydrogen transfer reaction profiles present five generic stationary points:
1. The entrance channel (isolated NO3 and halon molecule), which we use here as the reference energy level.
2. Several pre-reaction NO3:Halon complexes which have binding energies for the most stable conformer between −20 and −33 kJ mol−1. Due to the entropic factor these complexes have positive free energies (between +20 and +26 kJ mol−1 at 298 K) with respect to the reactants.
3. Two or three hydrogen transfer TS structures, depending on the substituents of the halons. The electronic barriers with respect to the entrance channel are between +12 and +17 kJ mol−1 while the relative free energies are aproximatively +55 kJ mol−1 at 298 K.
4. Between 12 and 35 conformers of the NO3H:Halon radical post reaction hydrogen transfer complexes have been characterized. Both, electronic and free energies are negative relative to the entrance channel. The electronic energies are around either −80 or −96 kJ mol−1, depending on whether the resulting halon radical molecules have one or no hydrogen atoms, respectively. The corresponding free energies are around −33 or −45 kJ mol−1 at 298 K.
5. The exit channel (isolated HNO3 and halon radical) also show negative values of electronic and free energy with respect to the entrance channel. The electronic energies are about 23 kJ mol−1 lower than the post-reaction complexes: around −57 or −74 kJ mol−1 for the halons with two or one H atoms, respectively, and the relative free energies are around −52 or −68 kJ mol−1 at 298 K.
Our results show that NO3-mediated oxidation of CH2ClBr, CH2ICl, CH2BrI, CHCl2Br, and CHClBr2 in the atmosphere will not compete with other atmospheric removal processes, predominately photolysis and reaction with OH.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d2cp00021k |
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