Janne
Soetbeer
a,
Marthe
Millen
a,
Konstantin
Zouboulis
a,
Miriam
Hülsmann
b,
Adelheid
Godt
b,
Yevhen
Polyhach
a and
Gunnar
Jeschke
*a
aLaboratory of Physical Chemistry, ETH Zürich, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland. E-mail: gunnar.jeschke@phys.chem.ethz.ch; Tel: +41 44 633 4259
bBielefeld University, Department of Chemistry, Universitätsstr. 25, D-33615 Bielefeld, Germany
First published on 26th February 2021
Our previous study on nitroxides in o-terphenyl (OTP) revealed two separable decoherence processes at low temperatures, best captured by the sum of two stretched exponentials (SSE) model. Dynamical decoupling (DD) extends both associated dephasing times linearly for 1 to 5 refocusing pulses [Soetbeer et al., Phys. Chem. Chem. Phys., 2018, 20, 1615]. Here we demonstrate an analogous DD behavior of water-soluble nitroxides in water–glycerol glass by using nitroxide and/or solvent deuteration for component assignment. Compared to the conventional Hahn experiment, we show that Carr–Purcell and Uhrig DD schemes are superior in resolving and identifying active dephasing mechanisms. Thereby, we observe a partial coherence loss to intramolecular nitroxide and trityl nuclei that can be alleviated, while the zero field splitting-induced losses for gadolinium labels cannot be refocused and contribute even at the central transition of this spin-7/2 system. Independent of the studied spin system, Uhrig DD leads to a characteristic convex dephasing envelope in both protonated water–glycerol and OTP glass, thus outperforming the Carr–Purcell scheme.
Here we go beyond the model character of OTP, as a homogeneous solvent that does not induce specific solute–solvent interactions, and study water–glycerol glasses, bringing DD closer to EPR applications of chemical and biological interest. This heterogeneous solvent is potentially more complex due to its ability to form hydrogen bonds12,13 and the effect of preferential solvation,14–16 while its glass-transition temperature (Tg) of 165 K17 (for 50:
50 v
:
v water
:
glycerol ≈ 20 mol% glycerol) limits the temperature range of the glassy state relative to OTP (Tg = 243 K). For large solutes in small-molecule solvents, such as spin-labeled proteins in water–glycerol, solute dynamics can be slaved by solvent dynamics.18Vice versa it has been found by simulations that collective modes of the protein influence water dynamics.19 Mode-coupling theory of binary mixtures suggests that at the ergodic–non-ergodic transition, which corresponds to the glass transition, dynamical correlations of very dilute solutes decay to zero in spite of such slaving.20 While these phenomena are important for understanding electron spin relaxation in the vicinity of the glass transition temperature21 and above, we here focus on the non-ergodic regime well below the glass transition temperature where fast collective motion might still be expected to influence longitudinal relaxation, but proceeds on a time scale well separated from the one that influences transverse relaxation.
Moreover, we explore a wider range of paramagnetic species to match the considerable progress in spin-label development in the last ∼15 years,22,23 that addressed limitations faced when working with gem-dimethyl-nitroxide-labeled bio-molecules under physiological conditions. These being nitroxide reduction in the cellular environment to an EPR-inactive species24 and Tm values in the nanosecond range at room temperature under immobilization.25 Triarylmethyl(trityl) radicals and gadolinium(III) complexes are chemically more inert, so that the introduction of corresponding spin labels enabled in-cell measurements.26–28 Secondly, their diverse spectroscopic properties with respect to nitroxide radicals allow for orthogonal labeling schemes.29–31 The carbon-based trityl radical is by design unique in its narrow lineshape stemming from limited hyperfine (HF) couplings to intra-molecular magnetic nuclei and a small g-anisotropy due to the high symmetry of the molecular structure. In contrast to these two organic S = 1/2 systems, gadolinium(III) is an EPR active high-spin species with S = 7/2 and thus seven allowed EPR transitions that are affected by zero-field splitting (ZFS). Its characteristic powder spectrum consists of a narrow −1/2 ↔ +1/2 transition in the center, and a broad feature arising from |mS| > 1/2 transitions at Q- and W-band frequencies.
We compare the DD performance of these three different paramagnetic species in water–glycerol glass at low temperature and concentration. Under the chosen conditions, the excited electron spins (A with resonance frequency ωA) are sufficiently diluted to avoid dephasing via other pulse-flipped spins, a process called instantaneous diffusion (ID).32 Also, electron spin diffusion (SD) due to dipole–dipole interactions with the non-excited electron spin population (B with resonance frequency ωB) becomes negligible, as T1 flips are too slow and dilution scales the dipolar term required to overcome the energy difference ωA–ωB. Instead, nuclear spin diffusion (NSD) is the driving dephasing mechanism,33 leading to spectral diffusion of the electronic magnetization into the dipolar-coupled nuclear spin bath. Some nuclei close to the paramagnetic center are excluded from this mechanism as they experience a paramagnetic shift and therefore lie within the radius of the so called diffusion barrier,34 which depends on the system's spin density distribution. Beside this effect, NSD requires a difference in HF coupling to two decoherence-inducing I1 = I2 = 1/2 nuclei, such as protons, that is comparable to the dipole–dipole coupling of this nuclei pair to enable diffusion-driving nuclear flip-flop transitions. Naturally, this matching condition depends on the molecular structure of the spin system and the characteristics of the chosen solvent. We assess dephasing contributions from intra-molecular interactions for three different paramagnetic species shown in Fig. 1 and couplings to solvent nuclei by CP and Uhrig DD experiments for up to five π pulses. To this end, we introduce H-mNOPEG and D-mNOPEG as presented in Fig. 1(c), which are analogues of the stiff nitroxides H-mNOHex and D-mNOHex used in the OTP study8 and shown in Fig. 1(b), to compare matrix effects induced by OTP to those of water–glycerol mixtures.
The trityl radical OX063 and its partially deuterated version OX071, see Fig. 1(d), feature reduced inter-molecular HF couplings compared to nitroxides, and a comparison to gadolinium(III) complexes addresses contributions from ZFS. The magnitude of this strong spin–spin interaction can be tuned by ligand choice35 and/or selective excitation of the |mS| = 1/2 or |mS| > 1/2 transitions.36 As ZFS affects the former transition only to second order,37 we evaluate to what extent DD results for pure S = 1/2 system translate to the −1/2 ↔ +1/2 transition of gadolinium complexes with increasing static ZFS, using the complexes Gd-NO3Pic, Gd-DOTA-M and Gd-PCTA presented in Fig. 1(e).
Overall, this study of protonated/partially deuterated nitroxides and trityl radicals, as well as gadolinium(III) complexes in protonated/deuterated water–glycerol glass demonstrates that the presence of two distinguishable dephasing pathways is not limited to nitroxides in o-terphenyl. Under favorable conditions, these dephasing contributions can already be identified by traditional Hahn relaxation measurements, while DD experiments with n > 1 are superior in resolving them. In addition, we demonstrate that DD schemes are more than just a building block for pulsed EPR experiments, as the scaling of the stretched exponential parameters with n provides sample information beyond the conventional Hahn relaxation analysis.
Fig. 1 displays all paramagnetic species relevant for this work, including the nitroxides H-mNOHex and D-mNOHex that have been used in our previous OTP study.8 They resemble the popular spin label MTSSL and combine them with a long stiff tail. Note, that the different tail lengths of H-mNOHex and D-mNOHex do not translate into a different decoherence behavior of these nitroxides, in particular in the low temperature regime investigated here.8 The analogous water-soluble nitroxides H- and D-mNOPEG feature three poly(ethylene oxide) (PEG) chains to make the otherwise hydrophobic tail compatible with the aqueous matrix.39 This long stiff tail avoids complications from local motions in the glass voids, which may induce dephasing in case of smaller nitroxides such as H- and D-NO. This effect would make our DD results potentially less transferable to spin-labeled biomolecules. Moreover, we rely on deuteration of the geminal methyl groups attached to the pyrroline ring to assign relaxation contributions stemming from intra-molecular and solvent nuclei. The trityl radical OX063 and its partially deuterated analog OX071 were chosen for their hydrophilic properties. The recent development and characterization of OX063- and OX071-based spin labels40 showcase the advantageous properties of the OX063 core, such as a small tendency to aggregate and long Tm values at 50 K.
Our choice of gadolinium(III) complexes was determined by the relative size of their axial ZFS parameter D: Gd-NO3Pic exhibits the smallest value of 485 ± 20 MHz, Gd-DOTA/Gd-DOTA-M an intermediate value of 714 ± 43 MHz and Gd-PCTA the largest value with 1861 ± 135 MHz.35 Many used gadolinium(III) spin labels rely on the DOTA-ligand or variations thereof, though the benefits of Gd-NO3Pic-based labels for DEER experiments have also been demonstrated.41
DD experiments were run with constant-bandwidth pulses (Q band: tπ = tπ/2 = 12 ns, W band: tπ = tπ/2 = 16 ns) and full phase cycles to isolate the correct coherence pathway.8 Specifically, a two-step phase cycle on the π/2 pulse with [(+x) − (−x)] suffices for the Hahn experiment (n = 1) to cancel the receiver offset, instead sequences with n > 1 require 4n−1 steps. These phase cycles consist of the same phase variation for the π/2 pulse, while all n π pulses apart from the last two are cycled in phase by [(+x) − (−y) + (+x) − (−y)], ensuring inversion of coherence order. The last π pulse has a constant phase, while the pulse with index n − 1 is subject to a [(+x) − (−x)] cycle. The n π pulses were arranged according to DD schemes of CP and Uhrig that determine the n + 1 interpulse delays Δj with 1 ≤ j ≤ n + 1. For a total sequence length T, the CP experiment relies on equidistant interpulse delays Δ1 = Δn+1 = T/(2n) and Δj = T/n for 2 ≤ j ≤ n, while the optimized interpulse delays derived by Uhrig9 are defined by
![]() | (1) |
For n = 2 the CP and Uhrig pulse sequence are identical and for n = 1 they both reduce to the Hahn experiment. The decoherence under a given DD experiment was measured by incrementing the total sequence length, and integrating symmetrically around the maximum of the last refocused echo formed at time T. The resulting electron spin coherence decay is reported as a function of t, referring to the elapsed time after the first π/2 pulse. Note that the time resolution of the spectrometer (in our case Q band: 2 ns, W band: 4 ns) induces round-off errors to the initial interpulse delays as well as increments of the Uhrig DD experiment. We found that deviations by a few percentages with respect to the optimal delays according to eqn (1) did not affect the experimental outcome. For some slowly relaxing species, required trace length exceeded the maximum length of the TWT gate. In these cases, we assembled the total relaxation trace from two separate acquisitions, placing all pulses first in a single TWT window, and second in individual windows.
Dipolar oscillations were recorded with the 4-pulse DEER sequence60 π/2obs–τ1–πobs–(τ1 + tdip)–πpump–(τ2 − tdip)–πobs–τ2 by placing the pump pulse (πpump = 12 ns) at Bmax of the nitroxide powder spectrum and the observation pulses (π/2obs = πobs = 16 ns) at an offset of 100 MHz. The interpulse delays τ1 and τ2 were set to 200 ns and 3 μs, respectively, and the dipolar evolution time tdip was incremented by 8 ns in combination with an 8-step nuclear modulation phase cycle.
![]() | (2) |
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Fig. 2 Synthesis of the water soluble nitroxides H-mNOPEG and D-mNOPEG. The syntheses of iodide 2 and alkyne 3 are described in the ESI,† Part A. Nitroxide D-12 was not isolated. DMAP = 4-(dimethylamino)pyridine, phen = phenanthroline, THF = tetrahydrofuran, TolH = toluene, TMS = trimethylsilyl, TIPS = triisopropylsilyl, rt = room temperature. |
We adhered to the established strategy39,46,47 to attach the PEG substituents rather late in the reaction sequence in order to minimize the cases in which a highly polar and water soluble compound needs to be isolated. Both nitroxides were constructed using iodide 2. Their syntheses differ in the sequence of attaching the nitroxide moiety and installing the PEG substituents and in the reaction type used for combining the nitroxide moiety with the overall tail. The overall yield was much better for H-mNOPEG (41%; calculation included synthesis of alkyne 3 from 4-ethynylaniline and H-11) than for D-mNOPEG (17%). However, please note that none of the transformations was optimized. The route used to obtain D-mNOPEG is of advantage as the most precious part, the perdeuterated nitroxide moiety, is introduced in the very last step. In addition, it circumvents the risk of CuI-induced reduction of the nitroxide to a hydroxylamine, a side reaction that occurs occassionally during an alkynyl-aryl coupling46 which is used here to link together iodide 2 and alkyne 3. On the other hand, the route used to assemble H-mNOPEG is attractive when the rod-like moiety is very precious or is to be varied because the consecutive steps in this route are smaller in number. Furthermore, other experiments suggest that iodide 2 can be furnished with PEG substituents first and then alkyne 3 can be coupled, a sequence that would reduce the number of steps performed with molecules carrying the nitroxide moiety, to only two: synthesis of alkyne 3 and its CC cross coupling to obtain H- and D-mNOPEG. The syntheses of H- and D-mNOPEG provide blueprints for the synthesis of water soluble analogs of the dinitroxides with rod-like spacers and hexyl side chains48 soluble in o-terphenyl.
The isotropic tumbling of a small nitroxide, such as H-NO, in the viscous solvent H2O leads to equal peak-to-peak amplitudes of these three signals. The reorientation of H-mNOPEG follows an anisotropic motion instead and the tumbling is slower as evident from the relative intensities as well as width of the lines. In addition, 13C satellites are visible for the two low-field transitions, yet these are significantly broadened at a spin concentration of 200 μM. By a dilution series down to 25 μM we studied concentration dependence of the CW EPR spectrum. The results point to aggregation of H-mNOPEG as the source of the broadening. Aggregate formation can be avoided by operating below the critical concentration. The corresponding CW spectrum can be simulated using EasySpin49 in the slow-motional regime (chili) by including HF couplings to one 14N and four 13C nuclei and an axial rotational correlation time tensor in line with the linear and rigid structure of H-mNOPEG. Fig. 3(a) suggests a critical concentration somewhat above 25–45 μM in H2O and at RT, as the low concentration spectrum agrees well with the simulation.
For low-temperature EPR experiments it was crucial to understand whether addition of the cryo-protectant glycerol and/or subsequent shock-freezing affects the aggregation equilibrium. Attempts to isolate the effect of glycerol by CW spectra of H-mNOPEG in H2O:glycerol at RT failed, as glycerol addition slowed the tumbling motion, so that the additionally broadened lines masked any concentration effects. We turned to the 4-pulse DEER experiment to monitor the aggregation behavior in water–glycerol glass at low temperature. Fig. 3(b) displays the distinct dipolar oscillations observed at spin concentrations of 80 and 45 μM that reveal structurally well-defined aggregates. Fig. Sa3, ESI† show distance distributions obtained from the 80 μM sample by Tikhonov regularization. The flat background of the DEER traces implies relatively small sizes of the formed aggregates and thus a small number of molecules that form these aggregates. Decreasing the concentration leads to a reduced modulation depth corresponding to a smaller number of dipolar-coupled spins. Contributions of non-refocusable spin–spin interactions to the decoherence measurements were therefore excluded by working with nitroxide concentrations of ≤30 μM. Our combined CW and DEER results suggest that glycerol addition and rapid freezing do not shift the aggregation equilibrium significantly. However, we noted an appearance of dipolar oscillations of a 30 μM sample after EPR experiments close to the Tg of H2O:glycerol upon re-cooling to 60 K. Clearly, local re-organization takes place as soon as the glass starts to soften. We avoided complications from the thermal history12 of samples by storing the capillaries in liquid nitrogen between measurements. We have obtained analogous results as described in this Section 3.1.1 by CW and pulsed EPR measurements of D-mNOPEG.
In summary, we obtain analogous temperature-dependent transverse relaxation results in water–glycerol and OTP for temperatures between 10 and 140 K, where both solvents are in the glassy state. Three central similarities are found:
1. Distinct temperature regimes:
• A low-temperature regime between 10 and 60 K that is characterized by the prevailing SSE model.
• A borderline regime between 70 and 140 K, where the relaxation can be either described by the SE or SSE model.
2. Two separable relaxation contributions in the low-temperature regime, as can be demonstrated either by SSE parameterization or experimental pulse-length variation in combination with nitroxide and/or solvent deuteration.
3. Effect of solvent deuteration on the fit parameter values of Tm2 and ξ2 in the low-temperature regime.
Note, that the SSE model was applicable to all combinations of H-mNOHex and D-mNOHex with OTP and dOTP in the previously defined low-temperature regime. In water–glycerol glass, D-NO in protonated solvent H2O:glycerol between 10 and 40 K poses an exception, as fits to its Hahn echo decay cannot reliably separate the fast from the slow contribution. We tested whether pulse length variation could reveal the two components instead. This approach varies the pulse-length dependent ID mechanism with respect to NSD that dominates the fast and/or slow relaxation pathway if the sample features a protonated nitroxide and/or solvent.8 Only a minor pulse-length effect results for D-NO in H2O:glycerol as visible in Fig. Sa9, ESI.† In contrast to the Hahn experiment, DD schemes with n > 1 can resolve the two underlying processes as discussed in Section 3.2.2.
Upon comparing the SSE parameter values in the low-temperature regime for both solvents, it is evident that the matrix-related ξ2 is generally larger than the nitroxide-related ξ1, while ξ2 values associated with proton-driven processes are reduced upon deuteration. Overall, the stretch parameters are somewhat smaller for water–glycerol systems with ξ1 ≤ 1 and ξ2 ≥ 1.5, relative to the ones in o-terphenyl with ξ1 ≈ 1 and ξ2 ≥ 2. Specifically in H2O:glycerol the difference in dephasing time and stretch parameter between the nitroxide-related fast and the matrix-related slow process is considerably smaller relative to OTP, rendering the separation challenging, as illustrated for D-NO in H2O:glycerol. Solvent deuteration significantly prolongs Tm2, while the precise factor depends on the chosen matrix. Exchanging OTP by dOTP doubles the Tm2 value, while the corresponding substitution by D2O:glycerol-d8 causes a larger increase in the temperature range of 10 to 40 K. This observation shows that the effect of deuteration does not simply scale with the gyromagnetic ratio of 2H relative to 1H, as often argued. Instead, other factors contribute, such as the quadrupole coupling of the I = 1 nuclei in a deuterated matrix. As discussed below, different closest hydrogen–hydrogen distances in the two matrices may also play a role. Interestingly, both deuterated solvents display a strong temperature dependence of the SSE parameters Tm2 and ξ2 at 50 and 60 K, while in OTP and H2O:glycerol these parameters only decrease slightly in this temperature window.
The DD characteristics of H- and D-mNOHex in o-terphenyl and H- and D-mNOPEG in water–glycerol glass are compared by the SSE parameter value dependence on n as summarized in Table 1 and shown in Fig. Sa11, ESI† for the four samples in water–glycerol. Fig. 4(a and b) highlight the comparison for the fully protonated case, i.e. H-mNOHex in OTP and H-mNOPEG in H2O:glycerol, while Fig. 5(a and b) present their deuterated analogues D-mNOHex in dOTP and D-mNOPEG in D2O:glycerol-d8.
Paramagnetic molecule | Matrix | Temperature [K] | [μs] | [μs] | ξ 2 range | T m1/n [μs] | ξ 1 range |
---|---|---|---|---|---|---|---|
a Excluding ξ1 value of Hahn. | |||||||
H-mNOHex | OTP | 40 | 9.2 | 11.1 | 2.7–5.1 | 2.4 | 0.7–1.0 |
D-mNOHex | OTP | 40 | 11.3 | 11.1 | 2.7–5.1 | 5.0 | 0.7–2.4 |
H-mNOPEG | H2O:glycerol | 40 | 6.3 | 6.5 | 2.7–5.7 | 2.4 | 0.4–1.3 |
D-mNOPEG | H2O:glycerol | 40 | 6.2 | 6.6 | 2.6–6.3 | 4.0 | 0.5–2.9 |
OX063 | H2O:glycerol | 110 | 6.3 | 6.3 | 2.7–5.4 | 4.2 | 1.7–2.1 |
OX071 | H2O:glycerol | 110 | 6.3 | 6.4 | 2.8–5.3 | 4.0 | 1.6–2.0 |
Gd-NO3Pic | H2O:glycerol | 10 | 6.0 | 6.0 | 2.6–5.2 | 4.0 | 1.5–2.2a |
Gd-DOTA-M | H2O:glycerol | 10 | 5.6 | 5.9 | 2.6–5.0 | 3.4 | 1.3–1.8a |
Gd-PCTA | H2O:glycerol | 10 | 4.7 | 4.9 | 2.3–3.9 | 2.7 | 1.3–1.7a |
H-mNOHex | dOTP | 40 | 17.5 | 15.4 | 2.2–2.8 | 4.1 | 0.4–1.4 |
D-mNOHex | dOTP | 40 | 17.2 | 15.2 | 2.0–2.7 | 4.0 | 1.2–2.1 |
H-mNOPEG | D2O:glycerol-d8 | 40 | 14.2 | 13.6 | 1.9–3.0 | 1.9 | 0.4–1.1 |
D-mNOPEG | D2O:glycerol-d8 | 40 | 14.9 | 13.9 | 1.6–2.8 | 3.4 | 1.6–2.5 |
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Fig. 4 SSE parameterization of DD data recorded at Bmax for protonated paramagnetic molecules in protonated solvent: (a) H-mNOHex in OTP (20 μM) at 40 K, (b) H-mNOPEG in H2O:glycerol (10 μM) at 40 K, (c) OX063 in H2O:glycerol (10 μM) at 110 K, (d) Gd-DOTA-M in H2O:glycerol (25 μM) at 10 K. Each column displays the fitting parameters Tm1, ξi, A1 (top to bottom) with the associated 95% confidence intervals for a particular sample as a function of n. The color encodes the DD experiment with Hahn (●), CP/Uhrig n = 2 (![]() ![]() ![]() |
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Fig. 5 SSE and SE parameterization of DD data recorded at Bmax for partially deuterated nitroxide and trityl radicals and for protonated Gd-DOTA-M in deuterated solvent: (a) D-mNOHex in dOTP (20 μM) at 40 K, (b) D-mNOPEG in D2O:glycerol-d8 (10 μM) at 40 K, (c) OX071 in D2O:glycerol-d8 (10 μM) at 110 K, (d) Gd-DOTA-M in D2O:glycerol-d8 (25 μM) at 10 K. Each column displays the fitting parameters Tmi, ξi, A1 (top to bottom) with the associated 95% confidence intervals for a particular sample as a function of n. The color encodes the DD experiment with Hahn (●), CP/Uhrig n = 2 (![]() ![]() ![]() |
DD experiments in both o-terphenyl and water–glycerol result in a linear increase of Tmi with n along with a characteristic ξi dependence. However, the DD effect of each π pulse is generally smaller in water–glycerol than in o-terphenyl as evident from the reduced Tm2/n slopes summarized in Table 1. Specifically in protonated solvents, the slow relaxation contribution yields a Tm2 value range of 5–30 μs in H2O:glycerol relative to 9–55 μs in OTP for n = 1 to 5. The same decrease in dephasing time was reported for the X-band Hahn decay of TEMPONE at 40 K with a Tm value of 8.5 μs in OTP and 4.6 μs in H2O:glycerol.33 The study attributes this effect to the roughly two-fold higher proton concentration in H2O:glycerol, and a thus doubled flip-flop frequency relative to OTP. In fact, the (shortest) intramolecular 1H–1H distance in the respective solvent molecule may rather be the decisive structural parameter.§ You et al.50 performed cluster correlation expansion (CCE) calculations to demonstrate that distinct orientations of all closest proton pairs in single crystal malonic acid determine Tm and ξ of CPMG traces with n = 1–6. Experiments confirmed these decoherence predictions as a function of single crystal orientations and suggested that the same proton pair control persists in polycrystalline malonic acid. A CCE implementation was also used to compute the spin dynamics of TEMPO and TEMPO-d18 in H2O from their solvated structures under the Hahn experiments and allowed to deal with the large Hilbert space arising from ∼1500 nuclei required for a converged decoherence description.51 Sorting these nuclei by their individual Tm contributions, mapped the most effective NSD-driving protons at a distance of 4–8 Å from the central electron spin.51 The two protons of a water molecule show a similar contribution to the electron dephasing, forming a flip-flopped proton pair with a larger dipolar coupling than any two intramolecular OTP protons.
Also in the deuterated solvents, n = 1 to 5 achieve smaller Tm2 of 20–80 μs in D2O:glycerol-d8 relative to 25–100 μs in dOTP. It is evident that solvent deuteration suppresses the dephasing more strongly in H2O:glycerol than in OTP glass, as already observed for Hahn relaxation. Specifically, the Tm2 value on average doubles for all DD experiments in dOTP as compared to the experiments in OTP, while refocusing in D2O:glycerol-d8 leads on average to a 2.8-fold increase in Tm2 with respect to refocusing in H2O:glycerol. Additionally, the performance difference between CP and Uhrig refocusing is reduced in water–glycerol compared to o-terphenyl with Uhrig decoupling still attaining somewhat larger Tm2 and ξ2 values in H2O:glycerol relative to CP, and vice versa in D2O:glycerol-d8. Whereas, the absolute Tm2 values differ for water–glycerol and o-terphenyl, the associated ξ2 parameters are similar. In particular, protonated solvents lead to convex Uhrig DD traces, associated with large ξ2 values. Considering the fast relaxation component, the parameters Tm1 and ξ1 of H- and D-mNOPEG match the results for H- and D-mNOHex in Tm1/n increase and ξ1 range as summarized in Table 1. Nitroxide deuteration increases the dephasing time of the fast pathway in combination with somewhat larger ξ1 values. Overall, these results firstly imply that the separation of the fast from the slow relaxation contribution is more challenging for water–glycerol matrices than for the o-terphenyl matrix. Secondly, the nitroxide nuclei clearly contribute to the overall coherence loss in both matrices. The origin of the distinct time scales Tm1 < Tm2 may arise from either of the two following mechanisms: the methyl nuclei reside within the diffusion barrier,51 which does not entirely suppress NSD but instead renders the associated decoherence pathway independent from the solvent nuclei-driven process. Alternatively, the methyl nuclei have to be viewed as a rigid but hindered C3 rotor, whose rotational ground state is sufficiently populated at low temperatures. The effect of rotational tunneling can then either enhance or suppress decoherence depending on the system's tunneling splitting.52 Importantly, in both cases the methyl nuclei distinguish themselves from o-terphenyl, water or glycerol protons by this additional tunneling term that alters the effective NSD-based mechanism.52
Finally, we briefly discuss the parameter A1, which is difficult to interpret as for three out of four sample compositions its values do not exhibit a clear trend with n. Only for the two fully deuterated cases, i.e. D-mNOHex in dOTP and D-mNOPEG in D2O:glycerol-d8, the corresponding Fig. 5(a and b) show a clear increase of A1 with n. Interestingly, these A1 values are generally larger for protonated nitroxides. Each DD experiment probes an ensemble of nitroxides in a given matrix, therefore the A1 parameter indicates which radical fraction relaxes through close-by nitroxide-nuclei rather than solvent-nuclei, and therefore reports on the heterogeneity of the direct spin environment.
![]() | (3) |
For biological applications, the refocused magnetization does not arise from isolated nitroxide radicals but instead from spin labels attached to a biomolecule. To mimic this effect to some extent, we compare the DD performance of the small H-NO with the elongated H-mNOPEG, which imitates an attached spin-label, in H2O:glycerol at 40 and 60 K as shown in Fig. Sa17, ESI.† At 40 K, the respective DD traces nearly overlap with a slight increase in decoherence observed for H-mNOPEG. This difference is significantly larger at 60 K, resulting in less convex shapes for H-mNOPEG particularly visible for Uhrig experiments. Therefore, local motion of H-NO in the glass voids does not induce serious dephasing at 40 K, while already at 60 K H-mNOPEG is subject to small anisotropic reorientation that modulate the hyperfine field induced by the surrounding solvent protons. This finding can be utilized twofold. First, our DD results at 40 K are expected to translate to solvent-exposed spin-labeled biomolecules in the low temperature limit. Second, local dynamics impact the refocusing effect, so DD experiments may serve as a spectroscopic tool in itself to identify the motional fingerprint.
Therefore, OX063 and its partially deuterated analog OX071 provide ideal spin systems to assess contributions from off-resonance excitation effects on DD. Furthermore, the center of spin density is shielded from both intramolecular and solvent protons unlike in nitroxide radicals. Before comparing the decoupling performance on these two organic S = 1/2 species, we discuss the effect of temperature, concentration and oxygen on the Hahn relaxation of OX063 and OX071.
We tested the effect of solvated oxygen on the trityl Hahn relaxation at 50 K by saturating a 20 μM OX071 D2O:glycerol-d8 solution with oxygen gas prior to flash freezing the sample. In solution, trityl radicals serve as agents for oximetric imaging as their linewidth depends on the oxygen concentration.42 Under these conditions, the Heisenberg exchange mechanism dominates, so that collisions with molecular oxygen lead to broadened lines and faster relaxation rates. At low temperatures, the required translational dynamics is frozen out, yet Fig. Sa19(b), ESI† demonstrates that other oxygen-induced processes become relevant at 50 K. Saturating the solution with oxygen thereby accelerates Tm relative to the flash frozen sample under atmospheric conditions, while ID contributes equally in both cases. In addition, we observed a decrease in T1 as the permissible SRT value is reduced from 18 to 14 ms. The driving mechanism relies either on local field fluctuations induced by modulated dipole–dipole interactions between the trityl radical and the triplet state of the molecular oxygen, or T1 flips of the oxygen electrons.53 However, the effect is subtle and degassing a 10 μM solution and subsequent freezing had little to no effect on the Hahn relaxation at 110 K as shown in Fig. Sa19(c), ESI.† For this reason, all other experiments were performed without degassing the sample.
Finally, the temperature range between 50 to 120 K was screened to optimize the temperature for a reasonable SRT, rendering DD experiments feasible, while staying below Tg of water–glycerol. According to temperature-dependent X-band relaxation measurements of 200 μM OX063 in H2O:glycerol,54T1 and therefore the required SRT is continuously reduced with increasing temperature, while Tm remains nearly constant between 80 and 140 K. Fig. Sa18(a), ESI† displays temperature-dependent Hahn relaxation of 10 μM OX063 in D2O:glycerol-d8 along with the determined SRT values in brackets. We chose a temperature of 110 K, where a convenient SRT of 2 ms can be used, while accepting a loss ΔT10% ≈ −6 μs relative to the longest T10% value of 28.6 μs in our temperature series at 50 K.
In H2O:glycerol the SSE parameter values associated with the slow relaxation pathway agree well between H-mNOPEG and the trityl radical OX061 as visible from Fig. 4(b and c). Independent of the radical, decoupling the water–glycerol protons achieves an increase in Tm2 by 6.2–6.6 μs per n increment as summarized in Table 1. Secondly, the Tm2/n slope is the same for CP and Uhrig refocusing with ξUhrig2 > ξCP2. In contrast to OTP, the water–glycerol ξ2 values are somewhat larger, in combination with a visible difference in Tm2/n increase for CP and Uhrig. Therefore, the slow relaxation contribution for trityl radicals in H2O:glycerol can be certainly assigned to the solvent protons, even though solvent deuteration did not enable this identification due to the described model switching. Focusing on the fast relaxation process, Tm1/n values range from 4.0–4.2 μs for OX063 and OX071, matching D-mNOPEG with 4.0 μs. H-mNOPEG differs by a smaller Tm1 increase of 2.4 μs per n increment along with smaller ξ1 and somewhat larger A1 values. For both types of radicals, the intramolecular protons/deuterons are not strictly inside the diffusion barrier and participate in NSD.16,51 Practically, the deuteration of the nitroxide methyl groups appears equivalent to keeping all hydrogen atoms at a distance from the unpaired electron, as it was the design idea for the trityl radicals. In both cases the intramolecular HF coupling is scaled (neglecting possible effects from the quadrupole coupling of the C–2H bond) and the potential contribution from rotational tunneling is suppressed, affecting the fast relaxation pathway in a comparable way. Experimentally, this reduction in HF coupling is also evident from the diminished ESEEM for OX071 in H2O:glycerol in Fig. Sa20(c) (ESI†) compared to D-mNOPEG in H2O:glycerol in Fig. Sa10(c), ESI.†
As discussed, trityl radicals in D2O:glycerol-d8 show a distinctive DD behavior apparent from applicability of the simpler SE model with ξ values independent of n and a sub-linear Tm/n increase. Solvent deuteration combined with weak intramolecular HF couplings of OX063 and OX071, renders the intramolecular and solvent nuclei indistinguishable so that a single relaxation process is observed. In H2O:glycerol, solvent-induced NSD is the same for nitroxide and trityl radicals, implying comparable HF couplings to the matrix protons. The deuterated water–glycerol mixture strongly alters the HF field experienced by the electron spin of the trityl radicals, as apparent from the reduced linewidth (suppression of unresolved HF couplings to solvent protons) of the trityl Q-band spectrum in Fig. Sa18(b), ESI.† Further, the 2H ESEEM modulation depth of the trityl radicals (Fig. Sa20(b), ESI†) is smaller than for H-mNOPEG in the same solvent (Fig. Sa10(b), ESI†), confirming the expectation that the electron spin in trityl radicals is shielded from nearby solvent nuclei by the bulk of the molecule. OX063 differs from OX071 by 24 1H versus 24 2H atoms present in the hydroxyethyl substituents as shown in Fig. 1(d). According to Fig. Sa21, ESI† these protons induce ξOX063 > ξOX071 in D2O:glycerol-d8 along with a reduced Tm saturation behavior of OX063 (γOX071 = 0.02–0.03 compared to γOX063 = 0.4–0.5). While the Hahn relaxation of OX071 is generally slowed compared to OX063, their relaxation traces cross for n > 1, as decoupling of the additional intermolecular protons in OX063 is more efficient for the first half of the DD decays, whereas deuteration proofs superior for longer total sequence lengths T. This observation teaches an important lesson for future assessment of potential spin labels: characterizing the decoherence decay by the Hahn experiment does not necessarily transfer linearly to the spin label's behavior in a multi-pulse experiment. Firstly, DD experiments can reveal relaxation contributions that are not resolved by a single refocusing pulse. Secondly, spin label characterization by decoupling sequences allows for an educated trade-off between a spectroscopic effort, e.g. pulsed dipolar spectroscopy by 5-pulse, 7-pulse or n-DEER, and a synthetic effort. Of course, the optimal choice depends on the required signal-to-noise ratio for a given spectrometer sensitivity and available measurement time.
Finally, the characteristic trityl line reveals a systematic limitation that multi-pulse EPR experiments generally appear to face: all DD data sets recorded so far feature a progressive decrease in initial echo intensity with increasing number of refocusing pulses independent of the CP or Uhrig scheme. In case of nitroxides, we hypothesized that effects from off-resonance excitation accumulate with increasing n. However, experiments with frequency-modulated hyperbolic secant pulses (testing pulse bandwidths of 50–500 MHz) applied to H-mNOHex in OTP and dOTP could not suppress these losses. Neither do errors in the pulse amplitude account for the decrease in absolute echo intensity, as the Meiboom-Gill56 variation of the CP sequence did not suppress the observed cumulative error. Relative to the nitroxide Q-band powder spectrum, the trityl linewidth is dramatically reduced and can be entirely inverted by the π pulses employed for the DD experiments, as illustrated in Fig. 6(a). Since the same echo intensity losses are observed for nitroxide and trityl radicals, off-resonance effects can be safely disregarded. Excitation of formally forbidden electron–nuclear transitions may contribute to the observed losses. But given the ESEEM modulation depths that we detect, additional sources of currently unknown origin are likely to contribute.
The decoupling effect clearly differs between the protonated and deuterated solvent, as the refocusing pulses prolong the dephasing time in H2O:glycerol with gDD > 1 from THahn10% = 6.8 μs. Instead, in D2O:glycerol-d8 no gain (gDD ≈ 1) is achieved beyond THahn10% = 64 μs so that losses of unknown origin (as discussed in Section 3.3.3) counteract the decoupling efforts. Consequently, the Tm parameter of the well fitting SE model (Fig. Sa32, ESI† compares the fit quality of the SE and SSE model) saturate with n, yielding a power law dependence with γ = 0.01–0.02 as shown in Fig. 5(d). Raitsimring et al.36 demonstrated that the W-band Hahn relaxation rate for Gd-DOTA in D2O:glycerol-d8 at 10 K increases from Bmax to the outer field positions. Assuming that the dephasing of the central transition is driven by NSD, the study assigns the increase in relaxation rate for |mS| > 1/2 to a transition-dependent transient ZFS (tZFS) effect that arises from small ligand dynamics (displacements by ≈0.01 Å or librations by ≈0.1°), if all other mechanisms, i.e. NSD, ID, SD and T1 flips, are suppressed. We therefore did not investigate the DD effect in D2O:glycerol-d8 for other field positions B0 ≠ Bmax as the gain for each refocusing pulse will deteriorate even further for |mS| > 1/2 transitions. Instead we focus on H2O:glycerol that results in the typical DD fingerprint of proton-driven NSD for all three gadolinium complexes with a more convex relaxation trace for Uhrig relative to CP decoupling. However, an additional ZFS-based relaxation pathway contributes, as is visible from the DD traces for n > 1 in Fig. 7(a).
The SSE expression models the DD data well (as demonstrated in Fig. Sa29–Sa31, ESI,† except for the Hahn relaxation of Gd-NO3Pic) and the stretched exponential parameters quantify the ZFS effect on the fast and slow dephasing pathway as summarized in Table 1 and illustrated for Gd-DOTA-M in H2O:glycerol in Fig. 4(d) (Fig. Sa28, ESI† displays the corresponding plot for all three gadolinium complexes in H2O:glycerol). Independent of the refocusing scheme, the Tm2/n values of the gadolinium complexes are systematically smaller compared to nitroxide and trityl radicals, with similar slopes for Gd-NO3Pic and Gd-DOTA-M, while Gd-PCTA leads to a reduced Tm2 gain with n. The same observation applies for ξ2, while ξUhrig2 > ξCP2 holds. ZFS also diminishes the decoupling effect on the fast process as seen from the progressively smaller Tm1/n slope from Gd-NO3Pic to Gd-PCTA. Although ESEEM is observed for all three gadolinium complexes and likely arises from 14N nuclei present in the ligands, we cannot assign the two relaxation pathways to intramolecular and solvent nuclei, as both processes display a ZFS dependence. Overall, NSD controls the dephasing of the central transition as evident from the strong solvent deuteration effect and the characteristic decoupling behavior in H2O:glycerol. In addition, our DD results demonstrate that ZFS effects clearly contribute to the transverse relaxation probed at Bmax – independent of the solvent. In H2O:glycerol both Tm1 and Tm2 are affected, implying that the proton flip-flop transitions and the ZFS-induced fluctuations occur at a similar time scale. As a spin A-spin A interaction,10 the ZFS-driven mechanism cannot be refocused by the same DD scheme and consequently dominates the dephasing in D2O:glycerol-d8.¶
Placing the refocusing pulses at Bkink reduces the decoupling effect with respect to placing the pulses at Bmax. Fig. 7(b) compares the nearly overlapping relaxation traces of Gd-NO3Pic and Gd-DOTA-M in H2O:glycerol to the somewhat accelerated transverse relaxation of Gd-PCTA (Fig. Sa34, ESI† shows the DD data sets individually), analogous to the observations at Bmax. For all three complexes, CP n = 2 achieves a gDD of 1.4, while the effect of n > 2 pulses saturates independent of the refocusing scheme. The SE model describes the DD data at Bkink by a sub-linear increase of Tm with n as shown in Fig. Sa35, ESI† along with a stretch parameter value ξ ≈ 1.5 that is roughly constant with n. Consequently, the superposition of various |mS| > 1/2 dephases mostly via the tZFS pathway, while contributions from proton-driven NSD at lower frequencies allow for a limited refocusing effect. Note that all DD traces lack visible ESEEM as the nuclear frequencies interfere destructively at Bkink.
We also performed W-band DD experiments of Gd-NO3Pic in H2O:glycerol to evaluate whether the refocusing effect becomes more efficient at W-relative to Q-band magnetic fields, as the central transition is narrowed by D2/gB0,37i.e. by a factor of three. Due to the limited time resolution of our W-band spectrometer (4 ns), pulses with tπ = tπ/2 = 16 ns had to be used. Fig. Sa39, ESI† compares the resulting traces to Q-band data. While the Q- and W-band Hahn relaxation traces overlap, refocusing schemes with n > 1 achieve a somewhat slower dephasing in W-band, both, for Uhrig or CP decoupling, preserving ξUhrig > ξCP. This effect can be attributed to a more selective excitation of the central |mS| = 1/2 transition at W-band relative to Q-band frequencies. Instead, the contribution from NSD remains unchanged as all required interactions are field-independent. Namely, the hyperfine coupling to the protons as well as the proton–proton dipolar coupling that dominates the width of the proton NMR line both at Q- and W-band. Only the suppressed ESEEM indicate a local field change experienced by the nuclei due to the increased nuclear Zeeman term at W-band, reducing the probability for forbidden transitions. Moving away from Bmax to the W-band Bkink field position results in a saturated DD behavior as previously described for Q-band. Before discussing the implications of these DD results for both spin label characterization and DD-based PSD experiments featuring gadolinium(III) labels, we illustrate the effect of attaching a spin label to a bio-molecule of interest.
The optimal set-up and experimental conditions for Gd–Gd 4-pulse DEER experiments have been determined theoretically as well as empirically,37 while decoherence limitations have been exclusively addressed via spin label design.41 Based on our experimental DD results, gadolinium-based distance measurements are expected to benefit from application of the 5-pulse DEER sequence, in particular if the observer pulses are placed at Bmax of the gadolinium line. This set-up trades modulation depth for sensitivity relative to pumping on Bmax in an Gd–Gd experiment, while an orthogonal spin-labelling approach that pumps on a nitroxide or trityl radical may off-set this sacrifice.
Generally, multiple refocusing is most effective in decoupling NSD arising from strongly HF coupled solvent nuclei, as evident from the linear increase of phase memory time Tm2 with number n of refocusing pulses. This slope is steeper in o-terphenyl compared to water–glycerol glass, and we tentatively attribute this difference to the larger intramolecular proton–proton or deuteron-deuteron distance present in the OTP and dOTP molecule, respectively. Independent of the solvent nature and spin system, the optimized Uhrig scheme is superior in decoupling field fluctuations that arise from the solvent protons, as reflected in ξUhrig2 > ξCP2. Especially in deuterated solvents, spin A-spin A interactions reduce or even override the DD effect, since ID and/or, in case of spin systems with S > 1/2, ZFS-driven dephasing dominates decoherence and is not amenable to DD. Aside from using DD as a spectroscopic tool that characterizes the spin environment, it provides a building block for dipolar spectroscopy. So far 5-pulse, 7-pulse and n-DEER experiments have been exclusively applied to nitroxide–nitroxide distance measurements. Our results suggest comparable gains in the attainable dipolar evolution time for other spin labels, specifically if the immediate spin environment cannot be sufficiently deuterated. Apart from gadolinium(III) complexes, copper(II) or manganese(II)-based spin labels are expected to display comparable relaxation behavior under multiple refocusing if the temperature is low enough to ensure sufficiently long T1 times. With respect to chemical and biological EPR applications, the here presented DD behavior of nitroxides, trityl radicals and gadolinium(III) complexes in water–glycerol glass is representative for water-soluble spin-labeled (bio-)molecules. For solvent-exposed labeling sites our low temperature and low concentration results will be directly transferable to EPR application work under comparable experimental conditions. If the spin label is subject to additional field fluctuations, e.g. arising from a biomolecule's backbone, DD traces are likely to exhibit a fingerprint of this dynamics. In upcoming work, we plan to address the effect of repeated refocusing in a lipid environment. This milieu is highly relevant for studies of spin-labeled membrane proteins and increases the complexity of the coupled nuclear spin bath with respect to o-terphenyl or water–glycerol glass.
Footnotes |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/d1cp00055a |
‡ Note that relaxation data acquired for H-mNOPEG and D-mNOPEG at spin concentrations of 100 μM would include contributions from increased spin–spin interaction due to the described aggregate formation. |
§ Zecevic et al.33 take this parameter in their decoherence simulations into account (1H–1H of 2.5 Å for OTP and 1.8 Å for H2O:glycerol) but do not interpret this difference. |
¶ In analogy to the nuclear quadrupole term that remains unaffected under the NMR CP n = 2 experiment,10 the ZFS interaction remains unaffected, as it is characterized by an equivalent Hamiltonian. |
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