Mahmoud A. A. Ibrahim*a,
Ossama A. M. Ahmedab,
Nayra A. M. Moussaa,
Sabry El-Taherb and
Hussien Moustafab
aChemistry Department, Faculty of Science, Minia University, Minia 61519, Egypt. E-mail: m.ibrahim@compchem.net
bDepartment of Chemistry, Faculty of Science, Cairo University, Giza, Egypt
First published on 15th October 2019
Recently, noncovalent interactions in complexes and crystals have attracted considerable interest. The current study was thus designed to gain a better understanding of three seminal types of noncovalent interactions, namely: hydrogen, halogen and tetrel interactions with π-systems. This study was performed on three models of Lewis acids: X3–C–H, F3–C–X and F–T–F3 (where X = F, Cl, Br and I; and T = C, Si, Ge and Sn) and three π-systems as Lewis bases: benzene (BZN), 1,3,5-trifluorobenzene (TFB) and hexafluorobenzene (HFB). Quantum mechanical calculations, including geometrical optimization, molecular electrostatic potential (MEP), maximum positive electrostatic potential (Vs,max), Point-of-Charge (PoC), potential energy surface (PES), quantum theory of atoms in molecules (QTAIM) and noncovalent interaction (NCI) calculations, were carried out at the MP2/aug cc-pVDZ level of theory. The binding energies were additionally benchmarked at the CCSD(T)/CBS level. The results showed that: (i) the binding energies of the X3–C–H⋯π-system complexes were unexpectedly inversely correlated with the Vs,max values on the hydrogen atom but directly correlated with the X atomic sizes; (ii) the binding energies for the F3–C–X⋯π-system and F–T–F3⋯π-system complexes were correlated with the σ-hole magnitudes of the X and T atoms, respectively; and (iii) for the F3–C–F⋯π-system complexes, the binding energy was as strong as the π-system was electron-deficient, indicating the dominating nucleophilic character of the fluorine atom. NCI analysis showed that the unexpected trend of X3–C–H⋯π-system binding energies could be attributed to additional attractive interactions between the X atoms in the X3–C–H molecule and the carbon atoms of the π-system. Furthermore, the I3–Sn–H molecule was employed as a case study of hydrogen, halogen and tetrel interactions with π-systems. It was found that hydrogen and halogen interactions of the I3–Sn–H molecule correlated with the electron-richness of the π-system. In contrast, tetrel interactions correlated with the electron deficiency of the π-system.
Estabilization = Emolecule⋯PoC − Emolecule | (1) |
For X3–C–H⋯, F3–C–X⋯ and F–T–F3⋯π-system complexes, the optimized monomers were positioned in a specific orientation to give the desired interactions as shown in Fig. 1. For complexes, potential energy surface (PES) scans were performed in H/σ-atom⋯π-system bond in the range of 2.0 Å to 6.0 Å far from the π-system centroid and with a step size of 0.1 Å (see Fig. 1). The binding energies were estimated at MP2/aug-cc-pVDZ (with PP functions for Br, I, Ge and Sn) level of theory and the basis set superposition error (BSSE) was eliminated via the counterpoise correction method.38 The binding energies of the studied complexes were also computed at CCSD(T)/CBS level of theory according to the following equations:39
ECCSD(T)/CBS = ΔEMP2/CBS + ΔECCSD(T) | (2) |
ΔEMP2/CBS = (64EMP2/aug-cc-pVQZ − 27EMP2/aug-cc-pVTZ)/37 | (3) |
ΔECCSD(T) = ECCSD(T)/aug-cc-pVDZ − EMP2/aug-cc-pVDZ | (4) |
Furthermore, the nature of noncovalent interactions in the studied complexes was investigated in terms of the electron density and its derivatives using the quantum theory of atoms in molecules (QTAIM).40 Bond critical points (BCPs) and bond paths were extracted and depicted. Topological parameters including electron density, Laplacian and total electron energy density were calculated. Noncovalent interaction (NCI) indices41 were also computed and NCI plots for the studied complexes were generated. The colouring scale of ρ was from −0.035 to 0.020 au. The QTAIM and NCI calculations were performed at MP2/aug-cc-pVDZ level of theory (with PP functions for Br, I, Ge and Sn). Finally, the interplay of hydrogen, halogen and tetrel bonds in I3–Sn–H⋯π-system complex as case study was investigated. All the quantum mechanical calculations were carried out using Gaussian 09 software;42 while QTAIM and NCI analyses were performed using Multiwfn 3.5 software.37 QTAIM and NCI diagrams were visualized using Visual Molecular Dynamics (VMD) software.43
As seen in Fig. 2, the MEP maps and Vs,max values of hydrogen atoms in X3–C–H molecules increased as the electron withdrawing power of the attached X atoms increased in the order I3–C–H < Br3–C–H < Cl3–C–H < F3–C–H. Moreover, the sizes and magnitudes of σ-holes for the F3–C–X and F–T–F3 molecules were found to be directly correlated with the atomic sizes of the σ-atoms (i.e., halogen and tetrel atoms). For the studied π-systems, the electrostatic potentials above the benzene carbon ring were negative and became more positive with increasing number of fluorine substituents in the order BZN < TFB < HFB.
With the Point-of-Charge (PoC) approach, the molecular stabilization energies of the studied monomers towards the approaching charges were assessed and compared. In this approach, the H/σ-atom⋯/π-system⋯PoC distances were taken in the range 2.5 Å to 7.5 Å with a step size of 0.1 Å (see computational methodology section for details). Molecular stabilization energy curves were generated for all studied monomers and are depicted in Fig. 3. The molecular energies calculated at H/σ-atom⋯/π-system⋯PoC distance of 2.5 Å are summarized in Table 1.
H bond donor | Estab. | X bond donor | Estab. | T bond donor | Estab. | π system | Estab. |
---|---|---|---|---|---|---|---|
PoC value = −0.50 au | |||||||
F3–C–H | −7.97 | F3–C–F | −0.53 | F–C–F3 | −5.88 | BZN | 3.87 |
Cl3–C–H | −7.09 | F3–C–Cl | −8.24 | F–Si–F3 | −12.31 | TFB | −3.48 |
Br3–C–H | −6.74 | F3–C–Br | −11.70 | F–Ge–F3 | −14.52 | HFB | −10.1 |
I3–C–H | −6.47 | F3–C–I | −17.54 | F–Sn–F3 | −21.06 | ||
PoC value = +0.50 au | |||||||
F3–C–H | 6.36 | F3–C–F | −1.41 | F–C–F3 | 1.58 | BZN | −12.29 |
Cl3–C–H | 4.62 | F3–C–Cl | 2.78 | F–Si–F3 | 7.20 | TFB | −4.65 |
Br3–C–H | 3.91 | F3–C–Br | 4.29 | F–Ge–F3 | 9.19 | HFB | 2.12 |
I3–C–H | 3.06 | F3–C–I | 6.64 | F–Sn–F3 | 15.19 |
As seen in Fig. 3, X3–C–H⋯PoC systems showed an expected electrophilic character of hydrogen atom with significant stabilization energies in the presence of negative PoC and destabilization energies with positive PoC. For negative PoC, molecular stabilization energies decreased (i.e., less negative) in the order F3–C–H > Cl3–C–H > Br3–C–H > I3–C–H. This trend was expected as Vs,max was largest in F3–C–H and lowest in I3–C–H (see Fig. 2). When positive PoC was incorporated, molecular destabilization energies were observed to decrease (i.e., less positive) in the same order of F3–C–H > Cl3–C–H > Br3–C–H > I3–C–H. For F3–C–X and F–T–F3 molecules, molecular stabilization energies were observed in the presence of negative PoC and increased as the σ-hole size of X and T atoms increased. For positive PoC, molecular destabilization energies were observed for all the investigated molecules except F3–C–F. From Table 1, molecular stabilization energies of F3–C–F⋯PoC at 2.5 Å were observed with values of −0.53 and −1.41 kcal mol−1 in the presence of PoC of −0.50 and +0.50 au, respectively. This unexpected molecular stabilization energy for F3–C–F in presence of ± 0.50 au PoCs may be attributed to very weak electrophilic character and relatively higher nucleophilic character of the fluorine atom.
From the molecular stabilization energy curves, the π-systems under study exhibited diverse attitudes towards the incorporated PoCs. According to Fig. 3, the nucleophilic character of BZN was apparent in the destabilization and stabilization energy of BZN in the presence of negative and positive PoCs, respectively. For instance, the molecular energies for BZN were 3.87 and −12.29 kcal mol−1 at 2.5 Å with −0.50 and +0.50 au PoCs, respectively.
Contrary to BZN, HFB showed an electrophilic character of the π-system. At HFB⋯PoC distance of 2.5 Å, molecular energies were −10.10 and 2.12 kcal mol−1 in the presence of −0.50 and +0.50 au PoCs, respectively.
Interestingly, TFB revealed both electrophilic and nucleophilic characters with stabilization energies in case of both negative and positive PoCs. For instance, the molecular stabilization energies at TFB⋯PoC distance of 2.5 Å were found to be −3.48 and −4.65 kcal mol−1 in the presence of −0.50 and +0.50 au PoCs, respectively. This might be explained by the inductive polarization effect of negative/positive PoC (i.e. Lewis base/acid) on the π-system (i.e. TFB).33,45–47
Noncovalent interaction | π-system | Bond donors | Distancea (Å) | EMP2/aug-cc-pVDZb (kcal mol−1) | ECCSD(T)/CBS (kcal mol−1) |
---|---|---|---|---|---|
a The most favourable at H/σ-atom⋯π-system distance based on the depicted curves in Fig. 4.b PP functions were implemented for Br, I, Ge and Sn atoms. | |||||
Hydrogen-bond | BZN | F3–C–H | 2.39 | −4.03 | −4.28 |
Cl3–C–H | 2.23 | −6.29 | −5.87 | ||
Br3–C–H | 2.22 | −6.91 | −6.39 | ||
I3–C–H | 2.24 | −7.69 | −7.18 | ||
TFB | F3–C–H | 2.51 | −2.00 | −2.08 | |
Cl3–C–H | 2.30 | −4.25 | −3.80 | ||
Br3–C–H | 2.28 | −5.00 | −4.46 | ||
I3–C–H | 2.29 | −5.88 | −5.41 | ||
HFB | F3–C–H | 2.63 | −0.43 | −0.35 | |
Cl3–C–H | 2.31 | −2.97 | −2.46 | ||
Br3–C–H | 2.28 | −3.93 | −3.35 | ||
I3–C–H | 2.29 | −4.98 | −4.53 | ||
Halogen-bond | BZN | F3–C–F | 3.19 | −0.95 | −0.97 |
F3–C–Cl | 3.35 | −2.75 | −2.61 | ||
F3–C–Br | 3.41 | −3.45 | −3.27 | ||
F3–C–I | 3.55 | −4.19 | −4.19 | ||
TFB | F3–C–F | 3.15 | −1.05 | −1.11 | |
F3–C–Cl | 3.36 | −2.18 | −1.95 | ||
F3–C–Br | 3.43 | −2.59 | −2.37 | ||
F3–C–I | 3.57 | −2.98 | −2.93 | ||
HFB | F3–C–F | 3.11 | −1.20 | −1.30 | |
F3–C–Cl | 3.34 | −1.85 | −1.55 | ||
F3–C–Br | 3.42 | −2.06 | −1.78 | ||
F3–C–I | 3.57 | −2.20 | −2.11 | ||
Tetrel-bond | BZN | F–C–F3 | 3.95 | −1.50 | −1.60 |
F–Si–F3 | 3.99 | −1.97 | −2.28 | ||
F–Ge–F3 | 3.97 | −2.26 | −2.69 | ||
F–Sn–F3 | 3.91 | −3.08 | −4.03 | ||
TFB | F–C–F3 | 3.91 | −1.49 | −1.59 | |
F–Si–F3 | 3.97 | −1.68 | −1.92 | ||
F–Ge–F3 | 3.96 | −1.88 | −2.24 | ||
F–Sn–F3 | 3.94 | −2.30 | −2.95 | ||
HFB | F–C–F3 | 3.78 | −1.79 | −1.91 | |
F–Si–F3 | 3.84 | −1.76 | −1.93 | ||
F–Ge–F3 | 3.83 | −1.93 | −2.21 | ||
F–Sn–F3 | 3.83 | −2.02 | −2.61 |
From data presented in Fig. 4, it is generally noticeable that all investigated complexes had significant negative binding energies. This reveals that hydrogen, halogen and tetrel bond donors have capability to favourably interact with both electron-rich and electron-deficient π-systems.
Contrary to expectations, the binding energies of X3–C–H⋯π-system complexes increased (i.e., more negative) with increasing X atomic size in order F3–C–H < Cl3–C–H < Br3–C–H < I3–C–H. For instance, the binding energies of F3–C–H⋯, Cl3–C–H⋯, Br3–C–H⋯ and I3–C–H⋯BZN complexes were found to be −4.28, −5.87, −6.39 and −7.18 kcal mol−1, respectively.
Interestingly, this is inversely correlated to Vs,max values of the hydrogen atoms in X3–C–H molecules. The same trend was also observed for X3–C–H⋯TFB and ⋯HFB complexes. This indicates that X3–C–H⋯π-system binding energy is ruled by other noncovalent interactions rather than C–H⋯π-system interactions. Therefore, further investigation on the nature of X3–C–H⋯π-system interaction is required (see NCI analysis section).
A comparison of the X3–C–H⋯BZN, ⋯TFB and ⋯HFB complexes revealed that binding energy decreased as positivity of the electrostatic potential of π-system increased. For instance, the binding energies for the Br3–C–H⋯π-system complexes were found to be −6.39, −4.46 and −3.35 kcal mol−1 for Br3–C–H⋯BZN, ⋯TFB and ⋯HFB, respectively. This binding energy pattern is in agreement with previous results.27,48
For the halogen bond donors, binding energies of the F3–C–X⋯π-system complexes increased as the σ-hole size on halogen atom increased (i.e., atomic size). For instance, the following binding energy trend was observed in F3–C–X⋯BZN complexes: F3–C–I⋯BZN > F3–C–Br⋯BZN > F3–C–Cl⋯BZN > F3–C–F⋯BZN with binding energies of −4.19, −3.27, −2.61 and −0.97 kcal mol−1, respectively. Moreover, binding energy decreased as positivity of the electrostatic potential of π-system increased. For instance, binding energy was found to decrease according to the order F3–C–Br⋯BZN > F3–C–Br⋯TFB > F3–C–Br⋯HFB with values of −3.27, −2.37 and −1.78 kcal mol−1, respectively. This trend may be understood in light of the nature of the interaction between the positive σ-hole and the negative sites of the π-system. For the F3–C–F⋯π-system, the binding energy trend was found to be reversed in the order F3–C–F⋯HFB > F3–C–F⋯TFB > F3–C–F⋯BZN with relatively low binding energies of −1.30, −1.11 and −0.97 kcal mol−1, respectively. This unexpected trend is consistent with PoCs results which may be explained in terms of the nucleophilic character of the fluorine atom being dominant over its electrophilic nature (i.e. fluorine atom prefers to act as a Lewis base rather than as a Lewis acid).
Similar to halogen bond donors, the F–T–F3⋯π-system binding energies were found to increase with increasing atomic size of the tetrel atom (i.e. σ-hole size). For instance, binding energies in F–T–F3⋯BZN complexes were found to be −1.60, −2.28, −2.69 and −4.03 kcal mol−1 for T = C, Si, Ge and Sn, respectively. The trend of F–T–F3⋯π-system interactions through BZN, TFB and HFB with same F–T–F3 molecule was rather irregular (see Table 2). This may be indicative of the role of F3 atoms from the F–T–F3 molecule in F–T–F3⋯π-system interactions.29 In the next section, a well-informed insight into the F–T–F3⋯π-system interactions will be gained through noncovalent interaction (NCI) index.
Noncovalent interaction | π-system | Bond donors | Hb (au) | ∇2ρb (au) | ρb (au) |
---|---|---|---|---|---|
Hydrogen-bond | BZN | F3–C–H | 0.00073 | 0.02420 | 0.00729 |
Cl3–C–H | 0.00076 | 0.03085 | 0.00955 | ||
Br3–C–H | 0.00079 | 0.03145 | 0.00971 | ||
I3–C–H | 0.00080 | 0.03065 | 0.00947 | ||
TFB | F3–C–H | 0.00067 | 0.02085 | 0.00618 | |
Cl3–C–H | 0.00072 | 0.02855 | 0.00882 | ||
Br3–C–H | 0.00075 | 0.02960 | 0.00912 | ||
I3–C–H | 0.00076 | 0.01225 | 0.01144 | ||
HFB | F3–C–H | 0.00058 | 0.01770 | 0.00519 | |
Cl3–C–H | 0.00067 | 0.02855 | 0.00891 | ||
Br3–C–H | 0.00070 | 0.03005 | 0.00936 | ||
I3–C–H | 0.00072 | 0.02980 | 0.00926 | ||
Halogen-bond | BZN | F3–C–F | 0.00066 | 0.01370 | 0.00312 |
F3–C–Cl | 0.00050 | 0.01430 | 0.00464 | ||
F3–C–Br | 0.00054 | 0.01480 | 0.00497 | ||
F3–C–I | 0.00043 | 0.01380 | 0.00521 | ||
TFB | F3–C–F | 0.00068 | 0.01500 | 0.00345 | |
F3–C–Cl | 0.00047 | 0.01440 | 0.00470 | ||
F3–C–Br | 0.00049 | 0.01460 | 0.00497 | ||
F3–C–I | 0.00039 | 0.01360 | 0.00522 | ||
HFB | F3–C–F | 0.00068 | 0.01630 | 0.00378 | |
F3–C–Cl | 0.00045 | 0.01530 | 0.00495 | ||
F3–C–Br | 0.00046 | 0.01520 | 0.00515 | ||
F3–C–I | 0.00035 | 0.01390 | 0.00533 | ||
Tetrel-bond | BZN | F–C–F3 | 0.00063 | 0.01200 | 0.00313 |
F–Si–F3 | 0.00068 | 0.01320 | 0.00352 | ||
F–Ge–F3 | 0.00071 | 0.01430 | 0.00393 | ||
F–Sn–F3 | 0.00079 | 0.01740 | 0.00493 | ||
TFB | F–C–F3 | 0.00065 | 0.01300 | 0.00345 | |
F–Si–F3 | 0.00069 | 0.01380 | 0.00373 | ||
F–Ge–F3 | 0.00071 | 0.01480 | 0.00408 | ||
F–Sn–F3 | 0.00076 | 0.01670 | 0.00476 | ||
HFB | F–C–F3 | 0.00074 | 0.01600 | 0.00422 | |
F–Si–F3 | 0.00082 | 0.01700 | 0.00447 | ||
F–Ge–F3 | 0.00086 | 0.01820 | 0.00485 | ||
F–Sn–F3 | 0.00092 | 0.01980 | 0.00536 |
According to data presented in Fig. S1,† noncovalent BCPs and bond paths were observed in all the studied complexes. The numbers of BCPs and bond paths were dependent on the nature of studied complex. For X3–C–H⋯π-system complexes, six BCPs between the hydrogen atom and the six carbon atoms of the π-system were identified whereas for tetrel bond-containing complexes three BCPs between the three coplanar fluorine atoms in F–T–F3 and the three carbon atoms in the π-system were observed. This indicates the intriguing role of F3 atoms in the F3–T–F⋯π-system interaction that was reported in our previous work.29 For halogen bond-containing complexes, six BCPs and three BCPs were identified in F3–C–X⋯BZN/HFB and TFB complexes, respectively.
For all the studied complexes, Hb at the BCP had positive values from 0.00035 au (in F3–C–I⋯HFB) to 0.00092 au (in F–Sn–F3⋯HFB) indicating the closed-shell nature of X3–C–H⋯π-system interactions. Generally, there was a correlation between Hb values and corresponding binding energies. For instance, Hb values for X3–C–H⋯TFB complexes for X = F, Cl, Br and I were observed to be 0.00067, 0.00072, 0.00075 and 0.00076 au with binding energies of −2.08, −3.80, −4.46 and −5.41 kcal mol−1, respectively.
The closed-shell nature of interaction was also pronounced in the relatively low values of ρb and the positivity of ∇2ρb indicating electronic charge depletions along the bond path (see Table 3). Generally, values of ρb were observed to increase as binding energies increased. For instance, ρb values in F3–C–X⋯TFB complexes were 0.00345, 0.00470, 0.00497 and 0.00522 au with binding energies of −1.11, −1.95, −2.37 and −2.93 kcal mol−1 for X = F, Cl, Br and I, respectively.
As seen in Fig. 6, NCI analysis revealed the occurrence of noncovalent interactions between hydrogen, halogen and tetrel bond donors with electron-rich and electron-deficient π-systems. Regarding the unanticipated finding of the binding energy order in X3–C–H⋯π-system complexes, NCI plots presented evidence of other noncovalent interactions between the three X atoms and the carbon ring of BZN, TFB and HFB. This noncovalent interaction was largest in the case X = I and lowest in the case X = Cl, while it was absent in the case X = F. Consequently, it resulted in the largest and lowest binding energy in I3–C–H⋯ and F3–C–H⋯π-system complexes, respectively (see Fig. 6).
For all halogen bond containing complexes, noncovalent interaction was observed between the halogen atom and the carbon ring. This is despite the various nucleophilic and electrophilic characters of the π-systems (see Fig. 6).
For F–T–F3⋯π-system complexes, the RDG isosurfaces were shaped as “fan-like” patterns. These patterns indicated interaction between the T atom and the π-system. Three additional disc-like isosurfaces emerged to indicate interaction between the coplanar F atoms in F–T–F3 monomer and the opposing carbon atoms of the π-system. This confirms the contribution of F3 atoms to F–T–F3⋯π-system binding energies.
Noncovalent interaction | π-system | Bond donors | Distancea (Å) | EBinding (kcal mol−1) |
---|---|---|---|---|
a The most favorable at H/I/Sn⋯π-system distance based on the depicted curves in Fig. 7. | ||||
H/I/Sn⋯π-system | BZN | I3–Sn–H | 2.40 | −5.01 |
I2H–Sn–I | 3.60 | −3.65 | ||
H–Sn–I3 | 4.80 | −3.65 | ||
TFB | I3–Sn–H | 2.50 | −3.52 | |
I2H–Sn–I | 3.60 | −3.06 | ||
H–Sn–I3 | 4.70 | −4.01 | ||
HFB | I3–Sn–H | 2.60 | −2.55 | |
I2H–Sn–I | 3.60 | −2.91 | ||
H–Sn–I3 | 4.60 | −5.84 |
Considering binding energies with BZN, it was found that the I3–Sn–H⋯BZN interaction was strongest followed by the H–Sn–I3⋯BZN and the HI2–Sn–I⋯BZN with values −5.01, −3.65 and −3.65 kcal mol−1, respectively. In the case of π-system = HFB, binding energies of hydrogen and halogen bond donors with the π-system were reduced to −2.55 and −2.91 kcal mol−1 while the binding energy of the tetrel bond donor with HFB increased to −5.84 kcal mol−1. Generally, it was observed that, with the exception of the H–Sn–I3⋯π-system interactions, binding energy decreased as the π-system became more electron-deficient. This reversed trend of H–Sn–I3⋯π-system binding energies is interpretable in light of the large contribution of I3 interactions to the total binding energy. Based on chemical rationale, the interactions of I3 atoms with carbon atoms of the π-system are greater as more electron-withdrawing groups are attached to the carbons of the π-system.
From Table 4, the binding energies of I3–Sn–H/HI2–Sn–I/H–Sn–I3⋯TFB are in rather close proximity to each other. Binding energy had the order H–Sn–I3⋯TFB > I3–Sn–H⋯TFB > HI2–Sn–I⋯TFB with values of −4.01, −3.52 and −3.06 kcal mol−1, respectively. The mixed nucleophilic/electrophilic character of TFB, deduced previously from PoC results, may be the reason for this comparable outcome of binding energies.
Footnote |
† Electronic supplementary information (ESI) available. See DOI: 10.1039/c9ra08007d |
This journal is © The Royal Society of Chemistry 2019 |