Ilaria Armeniaa,
Riccardo Balzarettia,
Cristina Pirronea,
Chiara Allegrettib,
Paola D'Arrigobcd,
Mattia Valentinocd,
Rosalba Gornatiac,
Giovanni Bernardini*ac and
Loredano Pollegioniac
aDipartimento di Biotecnologie e Scienze della Vita, Università degli Studi dell'Insubria, Via J.H. Dunant 3, 21100 Varese, Italy. E-mail: giovanni.bernardini@uninsubria.it
bDipartimento di Chimica, Materiali e Ingegneria Chimica “Giulio Natta”, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
cThe Protein Factory, Politecnico di Milano, ICRM CNR Milano, Università degli Studi dell'Insubria, Via Mancinelli 7, 20131 Milano, Italy
dCNR – Istituto di Chimica del Riconoscimento Molecolare (ICRM), Via Mancinelli 7, 20131 Milano, Italy
First published on 12th April 2017
The FAD-containing enzyme L-aspartate oxidase (LASPO) catalyzes the stereospecific oxidative deamination of L-aspartate and L-asparagine functioning under both aerobic and anaerobic conditions. LASPO possesses distinctive features that make it attractive for biotechnological applications. In particular, it can be used for the production of D-aspartate from a racemic mixture of D,L-aspartate, a molecule employed in the pharmaceutical industry, for parenteral nutrition, as a food additive and in sweetener manufacture. Since the industrial application of LASPO is hampered by the high cost per enzymatic unit, several attempts have been performed to improve its reusability, such as LASPO immobilization on various matrices. In this context, magnetic nanoparticles (NPs) have recently become available for the immobilization of enzymes. In this work, we have covalently immobilized LASPO from the thermophilic archaea Sulfolobus tokodaii on iron oxide NPs using 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide and hydroxysuccinimide as cross-linking agents. The NP-LASPO system showed a better stability than the free enzyme, was reused five times reaching full L-aspartate conversion and yielded a productivity (>3 μmol per h per unit) similar to that obtained with the free enzyme or with the enzyme immobilized on classical chromatographic supports. The NP-LASPO system can be easily recovered after each cycle. These results indicate that the prepared NP-LASPO system has promising industrial applications.
In past years, we focused on LASPO from the thermophilic archaea Sulfolobus tokodaii (StLASPO), a monomeric protein (comprising 472 residues, 52 kDa) which folds into three distinct domains: a FAD-binding domain, a capping domain, and a helical domain.3 StLASPO is produced as a recombinant protein in E. coli, while classical L-amino acid oxidases with a broad substrate specificity are not. It is produced as active holoenzyme (the flavin cofactor is tightly, but non-covalently, bound to the protein moiety) reaching up to 9% of the total proteins in the crude extract and 13.5 mg L−1 in the fermentation broth.3,4
We focused on this enzyme since it possesses distinctive features that make it attractive for biotechnological applications.5 Indeed, LASPO possesses high thermal stability (it is fully stable up to 80 °C), high temperature optimum, stable activity in a broad range of pH (7.0–10.0), weak inhibition by the product and by the D-isomer of aspartate, and a quite low Km for dioxygen (0.3 mM). These properties make StLASPO a potential useful novel tool in biocatalysis where it can be used in applications resembling those developed for D-amino acid oxidase of opposite enantioselectivity.6 In particular, it can be used for the production of D-aspartate, a molecule employed in the pharmaceutical industry, for parenteral nutrition, as food additive and in sweetener manufacturing.5 On this side, when applied in the free form, the resolution of a 50 mM racemic mixture of D,L-aspartate was obtained in one day using 9 U of StLASPO (final e.e. > 99.5%).4
To facilitate industrial applications by improving reusability and, hence, by reducing the costs, StLASPO was immobilized on various matrices. The best results in terms of immobilization yield and volumetric activity have been obtained through the free amino groups of the enzyme by using the supports Relizyme™ HA403/S R and SEPABEADS® EC-EP/S or when prepared as cross-linked enzyme aggregates. The Relizyme-StLASPO immobilized preparation was reused for three cycles keeping full oxidation of L-aspartate, in ≤2 hours starting from a 50 mM racemic mixture: in a semi-preparative scale reaction, 66 mg of D-aspartate per day were produced using 20 U of StLASPO.7
With the development of nanotechnology, magnetic nanoparticles (NPs) have become available for the immobilization of enzymes. Magnetic NPs, when small enough, show superparamagnetic behaviors with a fast response to applied magnetic fields and with negligible residual magnetism and coercitivity. This means that these NPs can be magnetized with an external magnetic field and immediately redispersed once the magnet is removed.8 We have recently functionalized iron oxide NPs with D-amino acid oxidase for therapeutic purposes and obtained a magnetic nano-enzymatic system capable of producing, in presence of its substrate, reactive oxygen species.9,10 This system, which possesses relatively low toxicity,11 might be driven to the target area by an external magnetic field. Magnetic nano-enzymes can be used in several other fields such as biosensors for environmental pollutants and clinical sensors for biomolecules. A caveat, when using NPs, is always a concern about their safety.12 Iron NPs, however, have been shown to exert a relatively low toxicity.11,13
The application of StLASPO has few limitations due to the high cost per enzymatic unit and inability of separation. Among the approaches useful to improve the enzyme stability, the immobilization has proven particularly valuable. On this side, significant improvement has been made by enzyme immobilization onto magnetic nanocarriers. They can be advantageously employed as industrial catalysts since they have high surface area, large surface-to-volume ratio, lower hindrance, allow to regulate the orientation of the enzyme on the support and to easily remove the enzyme by applying a magnetic field.14,15
To generate an immobilized StLASPO system differing in mechanical, physical and diffusional properties, we focused on the setup of magnetic NP-LASPO that can be easily recovered from the reaction mixture and, potentially, applied under different practical conditions as compared to classical resin-immobilized enzyme preparations. Following the optimization of the immobilization procedure, the NP-LASPO system was characterized for the main physical–chemical properties and then used to convert L-aspartate into oxaloacetate and ammonia. The flavoenzyme system can be reused for 4 cycles with no loss of activity. This result paves the way to the set-up of innovative biocatalytic processes.
To investigate the stability of NP-LASPO on temperature, the same reaction was performed at pH 10.0 in the 25–80 °C range: samples were collected at different time intervals for measurements. For the recycling of the NP-LASPO, at the end of each cycle NPs were collected with a magnet, washed several times and stored in the storage buffer. In all cases, the oxidation of L-aspartate was assayed by HPLC separation (see below).
Fig. 1 Synthetic route for StLASPO conjugation on Fe3O4NPs (not in scale). The protein structure corresponds to PDB code 2E5V. (1) Functionalization of Fe3O4NPs with APTES; (2) conjugation of StLASPO through covalent linkage via EDC/NHS. The enzyme can interact with just one NP-APTES (product A) or with amino groups of different NPs (product B) or with more than one amino groups of the same NP (product C). |
In order to identify the best conditions for the enzyme conjugation, several factors have been taken into consideration: EDC:NHS ratio, NPs: enzyme ratio, the presence of FAD (the enzyme cofactor), substrate or product (Table 1). At each condition, the immobilization yield and the enzyme activity bound to NP-APTES were determined.
NP-APTES (mg) | EDC:NHS ratio | Other components | Vf (mL) | Yield (%) | Relative activity (%) | Specific activity (U mg−1 enzyme) |
---|---|---|---|---|---|---|
a Reaction conditions: during StLASPO conjugation, 100 μM FAD 1 mM L-aspartate and/or 200 μM succinate were added.b Yield has been calculated from units present in the supernatant of the immobilization reaction relatively to the total units.c Relative activity is reported as the ratio between the activity assayed for the NP-LASPO and the activity of the free enzyme. | ||||||
4 | 1:2 | — | 1 | 75 | 4 | 0.32 |
4 | 1:2 | FAD | 1 | 100 | 14 | 0.43 |
4 | 1:2 | L-Aspartate | 1 | 100 | 15 | 0.43 |
4 | 1:2 | Succinate | 1 | 77 | 5 | 0.33 |
4 | 1:2 | L-Aspartate + FAD | 1 | 86 | 5 | 0.37 |
4 | 1:2 | Succinate + FAD | 1 | 77 | 7 | 0.33 |
8 | 1:2 | — | 2 | 84 | 4 | 0.36 |
8 | 1:2 | FAD | 2 | 100 | 15 | 0.43 |
8 | 1:2 | L-Aspartate | 2 | 100 | 12 | 0.43 |
8 | 1:2 | Succinate | 2 | 92 | 5 | 0.40 |
8 | 1:2 | L-Aspartate + FAD | 2 | 85 | 6 | 0.37 |
8 | 1:2 | Succinate + FAD | 2 | 88 | 7 | 0.38 |
8 | 1:1 | — | 2 | 91 | 8 | 0.39 |
8 | 1:2 | — | 2 | 84 | 4 | 0.36 |
8 | 2:1 | — | 2 | 85 | 8 | 0.37 |
8 | 2:2 | — | 2 | 88 | 9 | 0.38 |
8 | 2:3 | — | 2 | 75 | 10 | 0.32 |
8 | 3:2 | — | 2 | 74 | 10 | 0.32 |
8 | 5:1 | — | 2 | 67 | 13 | 0.29 |
8 | 5:5 | — | 2 | 79 | 8 | 0.34 |
8 | 10:1 | — | 2 | 86 | 11 | 0.37 |
8 | 10:5 | — | 2 | 80 | 8 | 0.34 |
4 | 5:1 | — | 2 | 39 | 6 | 0.17 |
8 | 5:1 | — | 2 | 95 | 11 | 0.41 |
16 | 5:1 | — | 2 | 100 | 15 | 0.43 |
24 | 5:1 | — | 2 | 100 | 12 | 0.43 |
4 | 5:1 | FAD | 2 | 37 | 8 | 0.16 |
8 | 5:1 | FAD | 2 | 52 | 10 | 0.22 |
16 | 5:1 | FAD | 2 | 94 | 10 | 0.41 |
24 | 5:1 | FAD | 2 | 95 | 12 | 0.41 |
The concentrations of EDC and NHS have to be carefully chosen to yield complete activation of the binding sites and, at the same time, to prevent formation of unwanted surface by-products,21 such as the N acetyl-substituted, derivative of the unstable intermediate of the EDC. Indeed, during the reaction in aqueous solution, O-acetyl urea is formed and, if it fails to react with an amine, undergoes to hydrolysis.22 Furthermore, an excess of EDC may promote unwanted polymerization due to the abundance of both amines and carboxylates on protein molecules leading to a protein-to-protein cross-linking.20 There is also the risk that the NHS esters formed on the protein molecule may then couple to other protein molecules to give poorly defined polymers.23 As a general rule, the amount of StLASPO activity bound to the NPs increases at higher EDC:NHS ratios (reaching the maximum at a 5:1 value) and using increasing NP-APTES amounts.
The presence of FAD significantly increases both the units and the amount of the enzyme bound to NPs at low (1:2) EDC:NHS ratio. The positive effect of the flavin cofactor is less evident at higher EDC:NHS ratios (e.g., its presence resulted in a 1.3 fold increase in immobilized StLASPO activity at 5:1 EDC:NHS ratio and using 4 mg of NP-APTES).
Similarly, the substrate L-aspartate also positively affects StLASPO immobilization in an active form, while the product analogue succinate does not. Notably, the use of the FAD and L-aspartate together results in an enzyme conformational change that does not favor its immobilization.
Under the best experimental conditions – i.e. 16 mg of NP-APTES in 5 mM sodium pyrophosphate buffer, pH 8.5, 65 mM EDC, 13 mM NHS, 200 μg of enzyme, final volume 2 mL – the amount of enzyme bound to NPs was approximately 100%, with an enzymatic activity of 0.026 U mg−1 of NPs and a relative activity of 15% (Table 1). Relative activity values strongly depend on the enzyme and the conditions used. Indeed, relative activities ranging from less than 10% to more than 80% in relation to the diameter of the NP, its functionalization and the immobilized enzyme are reported in the literature.24–26 Furthermore, the reduction of relative activity might be due also to the chemistry of EDC/NHS conjugation that determines non-specific bindings between NP-APTES and the enzyme molecules. Actually, when the covalent bonds are formed close to the active site, an activity loss due to conformational changes can occur.27,28 Under the best conjugation conditions, the specific activity of the immobilized enzyme for the L-aspartate is 0.43 U mg of enzyme (Table 1), comparable to the specific activity of the free enzyme. As for the relative activity, specific activity depends on the enzyme and the conditions of the immobilization process. Therefore, the conjugation can affect also the specific activity.29–31
Fig. 2 Transmission electron microscopy (TEM) and size distribution of Fe3O4NPs (A and D), NP-APTES (B and E), NP-LASPO (C and F). Bars in panel A–C indicate 100 nm. |
The immobilized NP-LASPO maintains the absolute stereo-selectivity of the free enzyme, i.e., the D-isomer of L-aspartate is not oxidized. The addition of exogenous, free FAD positively affect the activity of NP-LASPO: a 2-fold increase in the activity of the enzyme immobilized on the NPs was obtained in the presence of a large excess of exogenous cofactor in the HRP-coupled assay mixture, this indicating that half of StLASPO is immobilized in the apoprotein, inactive form.
To investigate the storage stability, the NP-LASPO system was stored in 5 mM sodium pyrophosphate buffer (pH 8.5) at 25 °C: 70% of the initial activity was maintained after 35 days.
The effect of pH on the catalytic activity of NP-LASPO was investigated in the 8.0 to 11.0 range, by following the disappearance of the L-aspartate peak by HPLC separation (Fig. 3).
Fig. 4, panel A left, displays the activity curves of the enzyme at different pH values. At pH 9, 10 and 11 the complete oxidation of L-aspartate is observed in 3 hours, while at pH 8 the reaction stops to approximately 90% of conversion. When compared to the free enzyme form, the immobilized enzyme shows a full stability at pH values 9–11 after 60 min of incubation, while for the free StLASPO the stability strongly decreases at pH > 8 (Fig. 4A, right). Similarly, earlier studies demonstrated that immobilized enzymes are frequently more stable than free enzymes in an alkaline environment.24,29
The effect of temperature on the catalytic activity of conjugated StLASPO was investigated in the 25–80 °C range (Fig. 4B). The NP-enzyme system shows a good activity in the range of 60–80 °C: the fastest L-aspartate oxidative deamination is apparent at 70 °C. Only at ≤37 °C a partial conversion of the 50 mM L-aspartate solution was obtained after 420 min. Fig. 4B right shows that the thermostability of NP-LASPO after 30 min of incubation parallel the behavior observed for the free enzyme.
The catalytic parameters of StLASPO immobilized on the Fe3O4NPs were determined by a HRP-coupled spectrophotometric assay at pH 10.0 at 25 °C. The apparent Vmax at air oxygen-saturation for the NP-LASPO system is 0.11 μmol per min per mg of protein and Km for L-aspartate is 4.3 mM. The corresponding values for the free enzyme form are 0.98 μmol per min per mg enzyme and 1.3 mM at pH 8.0 and 37 °C.4 The higher Km of NP-LASPO suggests a lower affinity for L-aspartate by the immobilized enzyme so a higher substrate concentration is needed to achieve a given enzyme activity. Diffusional limitations and steric effects may contribute to the increased apparent Km value due to a decrease in the accessibility of substrate to the enzyme active site. Similar effects are frequently reported for enzyme immobilized with EDC/NHS protocol, e.g., Tee and colleagues33 suggest that the high loading of the enzyme molecules using a zero-length crosslinker might restrict the access of the substrate to the active sites.
The NP-LASPO showed a better stability than the free enzyme at pH ≥ 9.0 and was reused five times reaching full L-aspartate conversion, similarly to that previously obtained for the Relizyme-StLASPO preparation which employed a 2.5-fold higher amount of enzyme and longer times.7 L-Aspartate conversion by NP-LASPO yielded a productivity similar to that obtained using the free enzyme (that cannot be recycled) or the enzyme bound to the amino support Relizyme™ HA403/S R (3.1 vs. 1–4 μmol per h per unit of enzyme at 50 mM L-aspartate concentration). These results indicate that the prepared NPs are favorable for immobilization of LASPO and the immobilized enzyme has promising industrial applications.
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