DOI:
10.1039/C6RA23006G
(Paper)
RSC Adv., 2016,
6, 109485-109494
4-Thiazolidinone derivatives: synthesis, antimicrobial, anticancer evaluation and QSAR studies
Received
15th September 2016
, Accepted 8th November 2016
First published on 9th November 2016
Abstract
A series of 4-thiazolidinone derivatives (1–18) was synthesized and tested in vitro for its antimicrobial and anticancer potential. Synthesized compounds were found to be 5 more potent antimicrobial agents than anticancer agents. Anticancer screening results indicated that compound 13 (IC50 = 15.18 μM) was the most active anticancer agent and was more potent than the standard drug, carboplatin (IC50 > 100 μM). Antimicrobial activity results indicated that 14 was the most active antimicrobial agent (pMICec = 2.14 μM) and may serve as an important lead for the discovery of novel antimicrobial agents. The QSAR studies indicated that the antibacterial and antifungal activities of the synthesized derivatives against different microbial strains were governed by lipophilic parameter, log
P, topological parameter, κα3 and electronic parameters cos
E and Nu. E.
1. Introduction
Cancer encompasses many disease states generally characterized by abnormally proliferating cells and is a major and often fatal disease. However, the effect of anticancer drugs on solid tumors has been poor. Because the response of solid tumors to available anticancer chemotherapy has been reduced, new drugs with improved efficacy are desired.1
Infectious diseases are responsible for a great number of deaths in the world population. The reduction of sensibility to antimicrobial agents in current use has been increasing for a great variety of pathogens and the resistance to multiple drugs is common for several microorganisms, especially for Gram positive bacteria. Infection by methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant Enterococci (VRE) presents a difficult problem for medicine. Given the evidence for the rapid global spread of resistance, the need for discovery or optimization of antimicrobial agents active against these resistant strains is of paramount importance.2
Quantitative structure–activity relationships (QSARs) are among the most widely used techniques in rational drug design, which finds the mathematical relationship between physicochemical properties of compounds and their experimentally determined biological activities. Thus, the derived QSAR model can be subsequently used to predict the biological activities of new derivatives. A good QSAR model both enhances our understanding of the specifics of drug action and provides a theoretical foundation for lead optimization. Moreover, QSAR techniques increase the probability of success with reduced time and cost in drug discovery.3
Thiazolidin-4-one derivatives are known to exhibit diverse biological activities such as anticancer4,5 antimicrobial,6–8 antiviral,9 antimycobacterial,10 analgesic and anti-inflammatory11,12 activities.
In the light of abovementioned facts and in continuation of our research in the field of antimicrobial, anticancer agents and previously synthesized novel derivatives of 4-thiazolidinones,13–16 we hereby report synthesis, antimicrobial, anticancer evaluation of 4-thiazolidinone derivatives and their QSAR study.
2. Experimental
Melting points were determined in open capillary tubes on a sonar melting point apparatus and were uncorrected. Reaction progress was monitored by thin layer chromatography on silica gel sheets (Merck silica gel-G). 1H nuclear magnetic resonance (1H NMR) and 13C NMR spectra were recorded on Bruker Avance II 400 NMR spectrometer using appropriate deuterated solvents and are expressed in parts per million (d, ppm) downfield from tetramethylsilane (internal standard). Infrared (IR) spectra were recorded on Perkin Elmer FTIR spectrometer using KBr pellets. Mass spectra were taken on Bruker Compass Data Analysis 4.0 Mass spectrometer.
2.1 General procedure for synthesis of 2-disubstituted-4-thiazolidinone derivatives
A mixture of (0.25 M) hipuric acid and excess of methanol (250 ml) with 1 ml of sulphuric acid was refluxed for 3–4 h in Round Bottom Flask (RBF). The mixture was cooled; the precipitated solid was separated by filtration and recrystallized from methanol to yield the methyl 2-benzamidoacetate. A mixture of methyl 2-benzamidoacetate (0.2 M) and excess of hydrazine hydrate (0.3 M), ethanol (250 ml) was refluxed for about 3 h and allowed to cool. The resultant solid was separated by filtration and recrystallized from ethanol to afford 2-benzamidoacetohydrazide. A mixture of 2-benzamido acetohydrazide (0.025 M) and required aromatic aldehydes (0.025 M) was refluxed in methanol (50 ml) in the presence of catalytic amount of glacial acetic acid for about 2 h. The reaction mixture was then cooled and the precipitated solid was separated by filtration and recrystallized from methanol to give the corresponding hydrazones of hippuric acid. A mixture of corresponding hydrazone of hippuric acid (0.015 M) and required amount of thioglycolic acid (0.015 M) in DMF (50 ml) containing a pinch of anhydrous zinc chloride was refluxed for about 6 h to yield 4-thiazolidinones (1–18). The reaction mixture was then cooled and poured onto the crushed ice. The solid thus obtained was filtered, washed with water, and the product was recrystallized from rectified spirit.12
2.1.1. N-(2-(2-(3-Ethoxy-4-hydroxyphenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (1). IR (KBr pellets, cm−1): 3610 (OH), 3317 (NH), 3034 (C–H aromatic), 1638 (C
C aromatic), 1679 (C
O), 1279 (C–N), 748 (C–S), 1178 (C–O–C str.,–OC2H5); 1H NMR (DMSO-d6, 400 MHz): 7.25–7.91 (m, 8H, ArH), 8.10 (s, 1H, NH), 4.03 (s, 1H, OH), 4.09 (d, 2H, CH2), 3.34 (s, 2H, CH2 of thiazolidinone), 1.36 (t, 3H, CH3 of –OC2H5), 3.94 (m, 2H, CH2 of –OC2H5).
2.1.2. N-(2-(2-(4-Chlorophenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (2). IR (KBr pellets, cm−1): 3322 (NH), 2971 (C–H aromatic), 1633 (C
C aromatic), 1689 (C
O), 1289 (C–N), 729 (C–S), 709 (C–Cl); 1H NMR (DMSO-d6, 400 MHz): 7.56–8.69 (m, 9H, ArH), 8.01 (s, 1H, NH), 4.43 (d, 2H, CH2), 3.50 (s, 2H, CH2 of thiazolidinone).
2.1.3. N-(2-(2-(4-(Dimethylamino)phenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (3). IR (KBr pellets, cm−1): 3214 (NH), 3048 (C–H aromatic), 1601 (C
C aromatic), 1673 (C
O), 1227 (C–N), 738 (C–S), 1367 (C–N str., aryl tertiary amine), 2928 (C–H str., CH3).; 1H NMR (DMSO-d6, 400 MHz): 7.54–8.64 (m, 9H, ArH), 8.08 (s, 1H, NH), 4.38 (d, 2H, CH2), 3.41 (s, 2H, CH2 of thiazolidinone), 2.87 (s, 6H, N(CH3)2).
2.1.4. N-(2-(2-(2-Chlorophenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (4). IR (KBr pellets, cm−1): 3361 (NH), 2891 (C–H aromatic), 1619 (C
C aromatic), 1688 (C
O), 1270 (C–N), 750 (C–S), 700 (C–Cl); 1H NMR (DMSO-d6, 400 MHz): 7.54–8.01 (m, 9H, ArH), 8.03 (s, 1H, NH), 4.01 (d, 2H, CH2), 3.42 (s, 2H, CH2 of thiazolidinone).
2.1.5. N-(2-(2-(4-Formylphenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (5). IR (KBr pellets, cm−1): 2892 (C–H str., CHO), 3312 (NH), 3060 (C–H aromatic), 1633 (C
C aromatic), 1672 (C
O), 1288 (C–N), 758 (C–S);1H NMR (DMSO-d6, 400 MHz): 7.77–8.77 (m, 9H, ArH), 8.03 (s, 1H, NH), 4.00 (d, 2H, CH2), 3.50 (s, 2H, CH2 of thiazolidinone), 8.88 (s, 1H, CHO).
2.1.6. N-(2-(2-(2-Methoxyphenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (6). Mp (°C); yield%; IR (KBr pellets, cm−1): 3339 (NH), 3037 (C–H aromatic), 1636 (C
C aromatic), 1665 (C
O), 1246 (C–N), 780 (C–S), 1167 (C–O–C str.,–OCH3); 1H NMR (DMSO-d6, 400 MHz): 7.54–7.96 (m, 9H, ArH), 8.18 (s, 1H, NH), 4.41 (d, 2H, CH2), 3.36 (s, 2H, CH2 of thiazolidinone), 3.83 (s, 3H, OCH3).
2.1.7. N-(2-Oxo-2-(4-oxo-2-(3,4,5-trimethoxyphenyl)thiazolidin-3-ylamino)ethyl)benzamide (7). IR (KBr pellets, cm−1): 3382 (NH), 3006 (C–H aromatic), 1647 (C
C aromatic), 1697 (C
O), 1295 (C–N), 718 (C–S), 1184 (C–O–C str., –OCH3); 1H NMR (DMSO-d6, 400 MHz): 7.50–8.87 (m, 7H, ArH), 7.93 (s, 1H, NH), 4.42 (d, 2H, CH2), 3.43 (s, 2H, CH2 of thiazolidinone), 3.74 (s, 9H, (OCH3)3).
2.1.8. N-(2-(2-(4-Methoxyphenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (8). IR (KBr pellets, cm−1): 3383 (NH), 2838 (C–H aromatic), 1645 (C
C aromatic), 1691 (C
O), 1299 (C–N), 756 (C–S), 1162 (C–O–C str., –OCH3); 1H NMR (DMSO-d6, 400 MHz): 7.51–7.98 (m, 9H, ArH), 7.99 (s, 1H, NH), 4.41 (d, 2H, CH2), 3.51 (s, 2H, CH2 of thiazolidinone), 3.85 (s, 3H, (OCH3).
2.1.9. N-(2-(2-(4-Bromophenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (9). IR (KBr pellets, cm−1): 3316 (NH), 3094 (C–H aromatic), 1631 (C
C aromatic), 1690 (C
O), 1286 (C–N), 709 (C–S), 613 (C–Br); 1H NMR (DMSO-d6, 400 MHz): 7.51–7.99 (m, 9H, ArH), 8.05 (s, 1H, NH), 4.42 (d, 2H, CH2), 3.37 (s, 2H, CH2 of thiazolidinone).
2.1.10. N-(2-(2-(3-Nitrophenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (10). Mp; IR (KBr pellets, cm−1): 3341 (NH), 3044 (C–H aromatic), 1629 (C
C aromatic), 1686 (C
O), 1246 (C–N), 712 (C–S), 1347 (C–NO2); 1H NMR (DMSO-d6, 400 MHz): 7.72–8.26 (m, 9H, ArH), 8.14 (s, 1H, NH), 4.01 (d, 2H, CH2), 3.38 (s, 2H, CH2 of thiazolidinone).
2.1.11. N-(2-Oxo-2-(4-oxo-2-phenylthiazolidin-3-ylamino)ethyl)benzamide (11). IR (KBr pellets, cm−1): 3316 (NH), 3071 (C–H aromatic), 1634 (C
C aromatic), 1688 (C
O), 1280 (C–N), 756 (C–S); 1H NMR (DMSO-d6, 400 MHz): 7.49–8.68 (m, 10H, ArH), 8.02 (s, 1H, NH), 4.14 (d, 2H, CH2), 3.47 (s, 2H, CH2 of thiazolidinone).
2.1.12. N-(2-(2-(4-Hydroxy-3-methoxyphenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (12). IR (KBr pellets, cm−1): 3603 (OH), 3435 (NH), 3027 (C–H aromatic), 1636 (C
C aromatic), 1676 (C
O), 1270 (C–N), 710 (C–S), 1168 (C–O–C str., –OCH3); 1H NMR (DMSO-d6, 400 MHz): 7.25–8.12 (m, 8H, ArH), 7.91 (s, 1H, NH), 4.14 (d, 2H, CH2), 3.51 (s, 2H, CH2 of thiazolidinone), 3.83 (s, 3H, (OCH3), 4.41 (s, 1H, OH).
2.1.13. N-(2-(2-(2-Hydroxynaphthalen-1-yl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (13). IR (KBr pellets, cm−1): 3624 (OH), 3416 (NH), 3060 (C–H aromatic), 1634 (C
C aromatic), 1697 (C
O), 1283 (C–N), 747 (C–S); 1H NMR (DMSO-d6, 400 MHz): 7.50–8.05 (m, 11H, ArH), 8.03 (s, 1H, NH), 4.07 (d, 2H, CH2), 3.53 (s, 2H, CH2 of thiazolidinone), 4.46 (s, 1H, OH).
2.1.14. N-(2-(2-(4-(Diethylamino)phenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (14). IR (KBr pellets, cm−1): 3399 (NH), 3050 (C–H aromatic), 1639 (C
C aromatic), 1702 (C
O), 1266 (C–N), 712 (C–S), 1353 (C–N str., aryl tertiary amine), 2895 (C–H str., CH3); 1H NMR (DMSO-d6, 400 MHz): 7.43–7.91 (m, 9H, ArH), 8.06 (s, 1H, NH), 3.96 (d, 2H, CH2), 3.36 (s, 2H, CH2 of thiazolidinone), 2.89 (m, 4H, (CH2)2), 1.14 (t, 6H, (CH3)2).
2.1.15. N-(2-Oxo-2-(4-oxo-2-p-tolylthiazolidin-3-ylamino)ethyl)benzamide (15). IR (KBr pellets, cm−1): 3327 (NH), 3069 (C–H aromatic), 1640 (C
C aromatic), 1688 (C
O), 1295 (C–N), 713 (C–S), 2931 (C–CH3); 1H NMR (DMSO-d6, 400 MHz): 7.48–7.91 (m, 9H, ArH), 7.98 (s, 1H, NH), 3.99 (d, 2H, CH2), 3.47 (s, 2H, CH2 of thiazolidinone), 2.38 (s, 3H, CH3).
2.1.16. N-(2-(2-(4-Hydroxyphenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (16). IR (KBr pellets, cm−1): 3613 (OH), 3367 (NH), 3036 (C–H aromatic), 1639 (C
C aromatic), 1671 (C
O), 1238 (C–N), 708 (C–S); 1H NMR (DMSO-d6, 400 MHz): 7.51–8.12 (m, 9H, ArH), 7.95 (s, 1H, NH), 3.97 (d, 2H, CH2), 3.48 (s, 2H, CH2 of thiazolidinone), 4.38 (s, 1H, OH).
2.1.17. (E)-N-(2-Oxo-2-(4-oxo-2-styrylthiazolidin-3-ylamino)ethyl)benzamide (17). IR (KBr pellets, cm1): 3032 (C–H aromatic), 1567 (C
C aromatic), 1655 (C
O), 1223 (C–N), 2777 (C–H str.,–CH
CH–), 777 (C–S); 1H NMR (DMSO-d6, 400 MHz): 7.34–7.47 (m, 10H, ArH), 7.96 (s, 1H, NH), 3.95 (d, 2H, CH2), 3.34 (s, 2H, CH2 of thiazolidinone), 7.88 (d, 1H, CH).
2.1.18. N-(2-(2-(3-Methoxyphenyl)-4-oxothiazolidin-3-ylamino)-2-oxoethyl)benzamide (18). Mp (°C); yield%; IR (KBr pellets, cm−1): 3316 (NH), 3050 (C–H aromatic), 1635 (C
C aromatic), 1680 (C
O), 1260 (C–N), 711 (C–S), 1193 (C–O–C str., –OCH3); 1H NMR (DMSO-d6, 400 MHz): 7.38–8.70 (m, 9H, ArH), 7.98 (s, 1H, NH), 3.97 (d, 2H, CH2), 3.38 (s, 2H, CH2 of thiazolidinone), 3.80 (s, 3H, OCH3).
3. Results and discussion
3.1 Antimicrobial assay
3.1.1. Determination of MIC. The antimicrobial activity of synthesized compounds was performed against Gram-positive bacteria: Staphylococcus aureus MTCC 3160, Bacillus subtilis MTCC 441, Gram-negative bacterium: Escherichia coli MTCC 443 and fungal strains: Candida albicans MTCC 227 and Aspergillus niger MTCC 281 using tube dilution method.17 Dilutions of test and standard compounds were prepared in double strength nutrient broth – I.P. (bacteria) or Sabouraud dextrose broth I.P. (fungi).18 The samples were incubated at 37 °C for 24 h (bacteria), at 25 °C for 7 d (A. niger) and at 37 °C for 48 h (C. albicans) and the results were recorded in terms of MIC.
3.1.2. Determination of MBC/MFC. The minimum bactericidal concentration (MBC) and fungicidal concentration (MFC) were determined by subculturing 100 μL of culture from each tube (which remained clear in the MIC determination) on fresh medium. MBC and MFC values represent the lowest concentration of compound that produces a 99.9% end point reduction.19
3.2 Evaluation of anticancer activity
The anticancer activity of synthesized compounds (1–18) was determined against an oestrogen receptor positive human breast adenocarcinoma, MCF-7 (ATCC HTB-22) cancer cell line. The cell line was cultured in RPMI 1640 (Sigma) supplemented with 10% heat inactivated foetal bovine serum (FBS) (PAA Laboratories) and 1% penicillin/streptomycin (PAA Laboratories). Culture was maintained in a humidified incubator at 37 °C in an atmosphere of 5% CO2. Anticancer activity of synthesized compounds at various concentrations was assessed using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) (Sigma) assay, as described by Mosmann, but with minor modification, following 72 h of incubation. Assay plates were read using a spectrophotometer at 520 nm. Data generated were used to plot a dose–response curve of which the concentration of test compounds required to kill 50% of cell population (IC50) was determined. Anticancer activity was expressed as the mean IC50 of three independent experiments.20
3.3 QSAR studies
The structures of synthesized compounds (1–18) were first pre-optimized with the molecular mechanics force field (MM+) procedure included in Hyperchem 6.03 (ref. 21) and the resulting geometries were further refined by means of the semiempirical method PM3 (Parametric Method-3). We chose a gradient norm limit of 0.04 kJ Å−1 for the geometry optimization. The lowest energy structure was used for each molecule to calculate physicochemical properties using TSAR 3.3 software for Windows.22 Further, the regression analysis was performed using the SPSS software package.23
3.4 Results and discussion
3.4.1. Chemistry. Thiazolidin-4-one derivatives (1–18) were synthesized using the synthetic procedure given in Scheme 1. The synthesized compounds were characterized by physicochemical as well as spectral means. Physicochemical properties and anticancer activity results of the synthesized compounds are presented in Table 1.
 |
| Scheme 1 Scheme for the synthesis of 4-thiazolidinone derivatives (1–18). | |
Table 1 Physicochemical properties and anticancer activity of the synthesized 4-thiazolidinone derivatives (1–18)
Comp. |
M. formula |
M. Pt. (°C) |
M. Wt. |
Rf valuea |
% yield |
IC50 (μM) (MCF-7) |
TLC mobile phase: benzene. |
1 |
C20H21N3O5S |
195–197 |
415.12 |
0.61 |
68 |
180.67 |
2 |
C18H16ClN3O3S |
201–203 |
389.86 |
0.59 |
75 |
48.75 |
3 |
C20H22N4O3S |
178–180 |
398.48 |
0.68 |
82 |
>250.95 |
4 |
C18H16ClN3O3S |
166–168 |
389.86 |
0.72 |
74 |
225.72 |
5 |
C19H17N3O4S |
186–188 |
383.42 |
0.60 |
77 |
>260.81 |
6 |
C19H19N3O4S |
182–184 |
385.44 |
0.75 |
83 |
207.56 |
7 |
C21H23N3O6S |
155–157 |
445.49 |
0.67 |
78 |
>224.47 |
8 |
C19H19N3O4S |
161–163 |
385.44 |
0.68 |
72 |
67.456 |
9 |
C18H16BrN3O3S |
150–152 |
434.31 |
0.59 |
69 |
66.77 |
10 |
C18H16N4O5S |
191–193 |
400.41 |
0.71 |
80 |
62.44 |
11 |
C18H17N3O3S |
222–224 |
355.41 |
0.58 |
71 |
>281.37 |
12 |
C19H19N3O5S |
174–176 |
401.44 |
0.59 |
76 |
234.16 |
13 |
C22H19N3O4S |
209–211 |
421.47 |
0.72 |
83 |
15.18 |
14 |
C22H26N4O3S |
181–183 |
426.53 |
0.66 |
65 |
112.54 |
15 |
C19H19N3O3S |
157–159 |
369.44 |
0.55 |
63 |
35.19 |
16 |
C18H17N3O4S |
170–172 |
371.41 |
0.50 |
76 |
>269.24 |
17 |
C20H19N3O3S |
144–146 |
381.45 |
0.54 |
79 |
83.89 |
18 |
C19H19N3O4S |
234–236 |
385.44 |
0.62 |
81 |
179.02 |
5-FU |
|
|
|
0.0052 |
Carboplatin |
|
|
|
>100 |
3.4.3. Anticancer activity. Anticancer activity results (Table 1) indicated that besides having excellent antimicrobial activity, the synthesized compounds were also having good anticancer activity against MCF 7 cancer cell line and compounds 2, 8, 9, 10, 13, 15 and 17 showed more potent anticancer activity than carboplatin (IC50 > 100 μM). Compounds 13 (IC50 = 15.18 μM) was found to be most potent anticancer agent.
3.5 SAR (structure activity relationship) studies
The antimicrobial and anticancer results revealed that the nature of the substituents has a considerable impact on the biological activities of thiazolidin-4-one derivatives and the following structure activity relationship (SAR) can be deduced:
(1) Presence of electron withdrawing groups (–Cl, –NO2, –Br, Compounds 4, 9 and 10) on moiety improved the antimicrobial activity of the synthesized compounds against C. albicans, A. niger, S. aureus and B. subtilis.
(2) Presence of electron releasing groups (compounds 14 and 15) on moiety improved the antibacterial and anticancer activity of the synthesized compound against E. coli and MCF-7 (ATCC HTB-22) cancer cell line.
(3) The presence of fused aromatic ring substitution (2-OH naphthaldehyde, compound 13) in moiety improves anticancer activity of synthesized compounds against an oestrogen receptor positive human breast adenocarcinoma, MCF-7 (ATCC HTB-22) cancer cell line.
(4) From these result we may conclude that different structural requirements are required for a compound to be effective against different targets.25
The above mentioned findings are summarized in Fig. 1.
 |
| Fig. 1 Structural requirements for the antimicrobial and anticancer activities of 4-thiazolidinone derivatives (1–18). | |
3.6 QSAR study
In order to identify the substituent effect on the antimicrobial activity, quantitative structure activity relationship (QSAR) studies were undertaken, using the linear free energy relationship (LFER) model described by Hansch and Fujita (1964).26 Biological activity data determined as MIC values were first transformed into pMIC values (i.e. −log
MIC) and used as dependent variables in QSAR study (Table 2). The different molecular descriptors selected for the present study and the values of selected descriptors are presented in Table 3.
Table 3 Values of selected descriptors calculated for QSAR studies
Comp. |
cos E |
log P |
MR |
0χ |
κα3 |
W |
Ne |
LUMO |
HOMO |
μ |
1 |
−2.12 |
1.58 |
108.12 |
20.80 |
5.36 |
2514.00 |
34 431.60 |
−0.29 |
−8.75 |
3.78 |
2 |
−1.39 |
2.29 |
100.02 |
18.52 |
4.79 |
1877.00 |
27 578.20 |
−0.48 |
−9.09 |
2.49 |
3 |
1.94 |
1.56 |
108.92 |
20.10 |
5.13 |
2333.00 |
32 503.40 |
−0.27 |
−8.44 |
1.70 |
4 |
−0.50 |
2.29 |
100.02 |
18.52 |
4.59 |
1839.00 |
28 029.90 |
−0.42 |
−9.00 |
1.88 |
5 |
7.17 |
1.45 |
101.81 |
19.23 |
4.75 |
2104.00 |
30 277.40 |
−0.88 |
−9.21 |
2.59 |
6 |
0.69 |
1.52 |
101.68 |
19.23 |
4.68 |
2028.00 |
31 216.10 |
−0.30 |
−8.80 |
3.38 |
7 |
12.95 |
1.01 |
114.60 |
22.38 |
5.43 |
2936.00 |
39 949.90 |
−0.39 |
−8.95 |
3.69 |
8 |
−0.18 |
1.52 |
101.68 |
19.23 |
4.88 |
2104.00 |
29 594.20 |
−0.24 |
−8.91 |
1.76 |
9 |
−0.51 |
2.56 |
102.84 |
18.52 |
4.88 |
1877.00 |
28 154.20 |
−0.56 |
−9.04 |
2.76 |
10 |
8.69 |
1.72 |
102.54 |
20.10 |
4.95 |
2276.00 |
31 868.50 |
−1.12 |
−9.34 |
4.42 |
11 |
0.94 |
1.77 |
95.21 |
17.65 |
4.40 |
1676.00 |
25 929.80 |
−0.26 |
−8.99 |
2.71 |
12 |
2.31 |
1.23 |
103.37 |
20.10 |
4.92 |
2274.00 |
32 848.10 |
−0.36 |
−8.84 |
4.09 |
13 |
−4.28 |
2.49 |
113.36 |
21.09 |
4.35 |
2609.00 |
35 959.30 |
−0.78 |
−8.85 |
3.61 |
14 |
9.39 |
2.25 |
118.42 |
21.51 |
5.63 |
2851.00 |
38 341.30 |
−0.24 |
−8.44 |
5.38 |
15 |
−5.30 |
2.24 |
100.26 |
18.52 |
4.66 |
1877.00 |
28 296.20 |
−0.30 |
−8.90 |
2.94 |
16 |
−5.83 |
1.49 |
96.91 |
18.52 |
4.64 |
1877.00 |
27 759.40 |
−0.26 |
−8.95 |
1.22 |
17 |
5.20 |
3.99 |
130.67 |
23.05 |
6.12 |
3898.00 |
37 017.60 |
−0.69 |
−8.65 |
2.74 |
18 |
−0.55 |
1.52 |
101.68 |
19.23 |
4.88 |
2066.00 |
30 022.10 |
−0.24 |
−8.93 |
1.21 |
In the present study, a dataset of 18 thiazolidinone derivatives (1–18) was used for linear regression model generation. The standard drugs norfloxacin and fluconazole were not included in model generation because of dissimilarity in structure with synthesized compounds. Different outliers are identified against different microorganisms, and the models have been developed after removal of the outliers (compound numbers in brackets) B. subtilis (2, 4, 6, 7, 9 and 17), E. coli (4, 7, 8, 10, 14 and 16), C. albicans (1, 6, 7, 9, 10, 15 and 18) and A. niger (4, 6, 9, 10, 11, 16 and 18). In multivariate statistics, it is common to define three types of outliers.27
As there was no difference in the activity (Table 2) as well as the molecular descriptor range (Table 3) of these outliers when compared to other synthesized compounds, these outliers belong to the category of Y outliers (substances for which the reference value of response is invalid).
Preliminary analysis was carried out in terms of correlation analysis. A correlation matrix constructed for antibacterial activity against B. subtilis is presented in Table 4. The correlation of molecular descriptors with their antimicrobial activity against different strains is given in Table 5. In general, high colinearity (r > 0.5) was observed between different parameters. The high interrelationship was observed between Ne and W (r = 0.995) and low interrelationship was observed between cos
E and HOMO (r = −0.087, Table 4).
Table 4 Correlation matrix for the antibacterial activity of the synthesized compounds against B. subtilis
|
pMICbs |
cos E |
log P |
0χ |
κα3 |
W |
Ne |
LUMO |
HOMO |
μ |
pMICbs |
1.000 |
|
|
|
|
|
|
|
|
|
cos E |
0.199 |
1.000 |
|
|
|
|
|
|
|
|
log P |
0.849 |
−0.124 |
1.000 |
|
|
|
|
|
|
|
0χ |
0.233 |
0.340 |
0.307 |
1.000 |
|
|
|
|
|
|
κα3 |
−0.098 |
0.508 |
−0.115 |
0.621 |
1.000 |
|
|
|
|
|
W |
0.268 |
0.372 |
0.358 |
0.991 |
0.647 |
1.000 |
|
|
|
|
Ne |
0.296 |
0.358 |
0.380 |
0.987 |
0.618 |
0.995 |
1.000 |
|
|
|
LUMO |
−0.337 |
−0.422 |
−0.125 |
−0.216 |
0.234 |
−0.164 |
−0.160 |
1.000 |
|
|
HOMO |
−0.030 |
−0.087 |
0.226 |
0.456 |
0.542 |
0.510 |
0.515 |
0.667 |
1.000 |
|
μ |
0.657 |
0.520 |
0.422 |
0.643 |
0.423 |
0.652 |
0.683 |
−0.337 |
0.103 |
1.000 |
Table 5 Correlation of antibacterial, antifungal and antimicrobial activities of synthesized compounds with their molecular descriptors
Descriptors |
pMICbs |
pMICec |
pMICan |
pMICca |
cos E |
0.199 |
0.289 |
0.291 |
0.789 |
log P |
0.849 |
0.386 |
−0.056 |
0.195 |
MR |
0.346 |
0.495 |
0.480 |
0.666 |
0χ |
0.233 |
0.466 |
0.650 |
0.718 |
0χv |
0.233 |
0.522 |
0.633 |
0.696 |
1χ |
0.287 |
0.442 |
0.588 |
0.656 |
1χv |
0.359 |
0.515 |
0.581 |
0.633 |
2χ |
0.309 |
0.425 |
0.539 |
0.612 |
2χv |
0.366 |
0.430 |
0.436 |
0.600 |
3χ |
0.138 |
0.291 |
0.504 |
0.524 |
3χv |
0.156 |
0.199 |
0.070 |
0.464 |
κ1 |
0.179 |
0.528 |
0.642 |
0.768 |
κ2 |
0.116 |
0.624 |
0.512 |
0.763 |
κ3 |
−0.065 |
0.791 |
0.197 |
0.748 |
κα1 |
0.135 |
0.563 |
0.684 |
0.775 |
κα2 |
0.064 |
0.682 |
0.564 |
0.767 |
κα3 |
−0.098 |
0.838 |
0.257 |
0.745 |
R |
0.287 |
0.442 |
0.588 |
0.656 |
J |
−0.413 |
−0.246 |
−0.001 |
−0.195 |
W |
0.268 |
0.550 |
0.443 |
0.676 |
Te |
−0.097 |
−0.440 |
−0.730 |
−0.687 |
Ee |
−0.283 |
−0.306 |
−0.805 |
−0.722 |
Ne |
0.296 |
0.292 |
0.807 |
0.721 |
SA |
0.189 |
0.592 |
0.591 |
0.755 |
IP |
0.030 |
−0.227 |
−0.281 |
−0.566 |
LUMO |
−0.337 |
−0.013 |
0.045 |
−0.241 |
HOMO |
−0.030 |
0.227 |
0.281 |
0.566 |
μ |
0.657 |
−0.043 |
0.701 |
0.482 |
From the correlation Table 4, it was observed that lipophilic parameter, log
P was found to be the dominating descriptor for antibacterial activity of the synthesized compounds against B. subtilis (eqn (1)).
3.6.1. QSAR model for antibacterial activity against B. subtilis.
|
pMICbs = 0.348 log P + 0.719, n = 12 r = 0.849 q2 = 0.632 s = 0.087 F = 25.85
| (1) |
Here and thereafter, n – number of data points, r – correlation coefficient, q2 – cross validated r2 obtained by leave one out method, s – standard error of the estimate and F – Fischer statistics.The developed QSAR model for antibacterial activity (eqn (1)) indicated that there is a positive correlation between log
P and antibacterial activity of the synthesized compounds against B. subtilis. This is indicated by low antibacterial activity value of compound 7 (pMICbs = 0.95 μM ml−1) having low log
P value (1.01).
log
P is the logarithm of the ratio of the concentrations of the un-ionized solute in two solvents, which is calculated according to following equation, where o is octanol and w is un-ionized water
log Po/w = log([soluteo]/[solutew]) |
The hydrophobic effect is the major driving force for the binding of drugs to their receptor targets in pharmacodynamics, and is based on the log
P contribution of each atom. Each atom in a molecule contributes to the log
P by the amount of its atomic parameter multiplied by the degree of exposure to the surrounding solvent.28
The developed QSAR model (eqn (1)) was cross validated by q2 value (q2 = 0.632) obtained by leave one out (LOO) method. The value of q2 more than 0.5 indicated that the model developed is a valid one. As the observed and predicted values are close to each other (Table 6), the QSAR model for antibacterial activity against B. subtilis (eqn (1)) is a valid one.29 The plot of predicted pMICbs against observed pMICbs (Fig. 2) also favors the developed model expressed by eqn (2). Further, the plot of observed pMICbs vs. residual pMICbs (Fig. 3) indicated that there was no systemic error in model development as the propagation of error was observed on both sides of zero.30
Table 6 Observed, predicted and residual antimicrobial activities of the synthesized compounds obtained by developed QSAR models
Comp. |
pMICbs |
pMICec |
pMICan |
pMICca |
Obs. |
Pre. |
Res. |
Obs. |
Pre. |
Res. |
Obs. |
Pre. |
Res. |
Obs. |
Pre. |
Res. |
1 |
1.22 |
1.27 |
−0.05 |
1.82 |
1.65 |
0.17 |
1.52 |
1.37 |
0.15 |
0.92 |
1.23 |
−0.31 |
2 |
1.80 |
1.52 |
0.28 |
1.49 |
1.46 |
0.03 |
1.19 |
1.14 |
0.05 |
1.19 |
1.26 |
−0.06 |
3 |
1.20 |
1.26 |
−0.06 |
1.50 |
1.58 |
−0.08 |
1.20 |
1.30 |
−0.10 |
1.50 |
1.36 |
0.15 |
4 |
1.80 |
1.52 |
0.28 |
1.80 |
1.39 |
0.40 |
1.80 |
1.16 |
0.64 |
1.19 |
1.28 |
−0.09 |
5 |
1.19 |
1.22 |
−0.04 |
1.49 |
1.45 |
0.04 |
1.19 |
1.23 |
−0.05 |
1.49 |
1.51 |
−0.03 |
6 |
1.49 |
1.25 |
0.24 |
1.19 |
1.42 |
−0.24 |
1.79 |
1.26 |
0.53 |
1.79 |
1.32 |
0.47 |
7 |
0.95 |
1.07 |
−0.12 |
1.25 |
1.68 |
−0.43 |
1.55 |
1.55 |
0.00 |
1.55 |
1.69 |
−0.13 |
8 |
1.19 |
1.25 |
−0.06 |
1.19 |
1.49 |
−0.30 |
1.19 |
1.21 |
−0.02 |
1.19 |
1.29 |
−0.10 |
9 |
0.94 |
1.61 |
−0.67 |
1.54 |
1.49 |
0.05 |
1.54 |
1.16 |
0.38 |
1.84 |
1.28 |
0.56 |
10 |
1.51 |
1.32 |
0.19 |
1.20 |
1.52 |
−0.31 |
1.81 |
1.28 |
0.52 |
2.11 |
1.56 |
0.55 |
11 |
1.45 |
1.34 |
0.12 |
1.45 |
1.33 |
0.13 |
0.85 |
1.09 |
−0.24 |
1.15 |
1.33 |
−0.17 |
12 |
1.21 |
1.15 |
0.06 |
1.51 |
1.50 |
0.00 |
1.21 |
1.32 |
−0.11 |
1.51 |
1.37 |
0.14 |
13 |
1.53 |
1.59 |
−0.06 |
1.23 |
1.31 |
−0.09 |
1.53 |
1.42 |
0.11 |
1.23 |
1.17 |
0.06 |
14 |
1.53 |
1.50 |
0.03 |
2.14 |
1.75 |
0.39 |
1.53 |
1.50 |
0.04 |
1.53 |
1.58 |
−0.05 |
15 |
1.47 |
1.50 |
−0.03 |
1.47 |
1.42 |
0.05 |
1.17 |
1.17 |
0.00 |
0.87 |
1.14 |
−0.27 |
16 |
1.17 |
1.24 |
−0.06 |
1.17 |
1.41 |
−0.24 |
1.77 |
1.15 |
0.63 |
1.17 |
1.12 |
0.05 |
17 |
1.56 |
2.11 |
−0.54 |
1.86 |
1.92 |
−0.05 |
1.26 |
1.45 |
−0.19 |
1.56 |
1.45 |
0.11 |
18 |
1.19 |
1.25 |
−0.06 |
1.49 |
1.49 |
0.00 |
1.79 |
1.22 |
0.57 |
2.09 |
1.28 |
0.81 |
 |
| Fig. 2 Plot of observed pMICbs against predicted pMICbs by eqn (1). | |
 |
| Fig. 3 Plot of observed pMICbs against residual pMICbs by eqn (1). | |
In case of antibacterial activity against E. coli, topological parameter, Kier's alpha third order shape index (κα3, Table 5) was found most dominant in expressing antibacterial activity of the synthesized compounds against E. coli. So, QSAR model for antibacterial activity against E. coli (E 2) was developed using κα3.
3.6.2. QSAR model for antibacterial activity against E. coli.
|
pMICec = 0.342κα3 − 0.177, n = 12 r = 0.838 q2 = 0.531 s = 0.109 F = 23.62
| (2) |
As in case of antibacterial activity against B. Subtilis, antibacterial activity of the synthesized compounds against E. coli is also positively correlated with their κα3 values which means that antibacterial activity of the synthesized compounds against E. coli will increase with increase in their κα3 values (Tables 2 and 3).Electronic parameter, cosmic total energy (cos
E) was found to be effective in describing the antifungal activity of the synthesized compounds against C. albicans (eqn (3), Table 5).
3.6.3. QSAR model for antifungal activity against C. albicans.
|
pMICca = 0.0300 cos E + 1.297, n = 11 r = 0.789 q2 = 0.503 s = 0.113 F = 14.82
| (3) |
In case of antifungal activity of the synthesized compounds against A. niger, electronic parameter, nuclear energy (Nu. E) was found to be the most dominating descriptor for describing the antifungal activity of the synthesized compounds against A. niger (eqn (4), Table 5).
3.6.4. QSAR model for antifungal activity against A. niger.
|
pMICan = 0.000033Nu. E + 0.232, n = 11 r = 0.807 q2 = 0.529 s = 0.105 F = 16.78
| (4) |
The validity and predictability of the QSAR models for antimicrobial activity of the synthesized compounds against E. coli, C. albicans and A. niger (eqn (2)–(4)) was cross validated by their high q2 values (q2 = 0.531, 0.503 and 0.529 respectively) obtained by leave one out (LOO) method. Further, as the observed and predicted values are close to each other (Table 4), the QSAR model for antimicrobial activity of the synthesized compounds against E. coli, C. albicans and A. niger (eqn (2)–(4)) are valid ones.29 The high residual values observed in case of outliers justify their removal while developing QSAR models. It is important to mention a fact here that no significant correlation was observed between antibacterial activity of synthesized compounds against S. aureus and their calculated molecular descriptors.It was observed from developed QSAR models [eqn (1)–(4)] that the antibacterial and antifungal activities of the synthesized 4-thiazolidinone derivatives against different microbial strains were governed by lipophilic parameter, log
P, topological parameter, κα3 and electronic parameters cos
E and Nu. E.
When biological activity data lies in the narrow range, the presence of minimum standard deviation of the biological activity justifies its use in QSAR studies.31 The minimum standard deviation (Table 2) observed in the antimicrobial activity data justifies its use in QSAR studies.
3.7 QSAR studies of anticancer activity
Biological activity data determined as IC50 values were first transformed into pIC50 values (i.e. −log
IC50) and used as dependent variables in QSAR study. From the correlation Table 4, it was observed that lipophilic parameter, log
P was found to be the dominating descriptor for anticancer activity of the synthesized compounds (eqn (5)).
QSAR model for anticancer activity.
|
pIC50 = 0.469 log P − 0.257, n = 10 r = 0.726 q2 = 0.295 s = 0.211 F = 8.91
| (5) |
The inclusion of the electronic parameter, the energy of highest occupied molecular orbital (HOMO), as well as log P improved correlation coefficient r to 0.836 (eqn (6))
QSAR model for anticancer activity.
|
pIC50 = 0.458 log P − 0.510 × HOMO − 4.785, n = 10 r = 0.836 q2 = 0.477 s = 0.180 F = 8.10
| (6) |
While developing the QSAR model compounds 3, 5, 7, 11 and 16 have not been included in the QSAR model development as they don’t have definite biological activity values. Similarly compounds 4, 13 and 17 have not been included as they were found to be outliers. In multivariate statistics, it is common to define three types of outliers.27i X/Y relation outliers are substances for which the relationship between the descriptors (X variables) and the dependent variables (Y variables) are not the same as in the (rest of the) training data.
ii X outliers are substances for which the molecular descriptors do not lie in the same range as the (rest of the) training data.
iii Y outliers are only defined for training or test samples. They are substances for which the reference value of the response is invalid.
The QSAR studies indicated the importance of the lipophilic parameter, log
P and the electronic parameter HOMO in describing the anticancer activity of the synthesized compounds.
4. Conclusion
A series of novel 4-thiazolidinone derivatives (1–18) was synthesized and evaluated for its antimicrobial and anticancer potential. In general, the synthesized compounds were found to be more potent antimicrobial agents than anticancer agents. Anticancer screening results indicated that compound 13 (IC50 = 15.18 μM) was the most active anticancer agent and was more potent than standard drug, carboplatin (IC50 > 100 μM). Antimicrobial activity results indicated that 14 was the most active antimicrobial agent (pMICec = 2.14 μM) and may serve as important lead for the discovery of novel antimicrobial agents. The QSAR studies indicated that the antibacterial and antifungal activities of the synthesized derivatives against different microbial strains were governed by lipophilic parameter, log
P, topological parameter, κα3 and electronic parameters cos
E and Nu. E.
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