F.
Lundvall
*a,
D. S.
Wragg
ab,
P. D. C.
Dietzel
c and
H.
Fjellvåg
ab
aSMN – Centre for Materials Science and Nanotechnology, Department of Chemistry, University of Oslo, P.O. Box 1126, N-0318 Oslo, Norway. E-mail: fredrik.lundvall@smn.uio.no
binGAP – Innovative Natural Gas Processes and Products, Department of Chemistry, University of Oslo, P.O. Box 1033, N-0315 Oslo, Norway
cDepartment of Chemistry, University of Bergen, P.O. Box 7803, N-5020 Bergen, Norway
First published on 25th July 2016
Two new coordination polymers were synthesized solvothermally using 4,4′-dimethoxy-3,3′-biphenyldicarboxylic acid (H2dmbpdc), and di- and trivalent metal salts (Cu(NO3)2·2.5H2O and La(NO3)3·6H2O). Their structures were determined by single-crystal X-ray diffraction analysis, and their thermal stability was evaluated by thermogravimetric analysis. The copper compound Cu(dmbpdc)(DMF; N,N-dimethylformamide), CPO-71-Cu, is based on the well known copper acetate paddlewheel secondary building unit. The asymmetric unit comprises one copper cation with one DMF molecule and one linker molecule coordinated. The lanthanum compound La2(dmbpdc)3(DMF)(H2O)3, CPO-72-La, is formed from a dimer of nine-coordinate, edge sharing lanthanum cations. To this dimer, three water molecules and one DMF molecule are coordinated in an ordered fashion. In addition, the asymmetric unit contains three crystallographically unique linker molecules. Both CPO-71-Cu and CPO-72-La form two-dimensional layered structures, and topological analyses reveal sql topologies with point symbol 44·62 and vertex symbol 4·4·4·4·6(2)·6(2). The thermal behavior of CPO-71-Cu was investigated in an in situ structural analysis by variable temperature powder- and single-crystal X-ray diffraction.
Investigating the properties of known MOFs and coordination polymers is a highly active research field. Improving existing knowledge and discovering new details is of great importance to drive the field forward. Equally important are the numerous reports on completely new structures that can inspire and set off new investigations. Notably, the search for new structures has frequently been limited to linkers available from commercial suppliers. As a consequence, many well known MOFs such as MOF-5, HKUST-1, CPO-27/MOF-74 and MIL-53 have in common that they are based on relatively simple commercially available linkers.8–12 Recently, the trend in coordination polymer chemistry is moving towards more specialized linkers, often designed and produced in-house with a specific property in mind.13 A linker can for instance be intended for post-synthetic modification, have a built in photoactive center, or be designed with catalytic properties in mind.
Recently, we reported two series of 3D coordination polymers based on 4,4′-dimethoxy-3,3′-biphenyldicarboxylic acid (H2dmbpdc), a relatively simple yet unexplored linker.14 Here we present the synthesis and characterization of two new coordination polymers based on the same linker. The new coordination polymers are layered 2D structures based on dinuclear metal SBUs, not previously reported in combination with H2dmbpdc. Furthermore this is the first report of a coordination polymer combining H2dmbpdc and a trivalent rare-earth cation.
Thermogravimetric analysis and Differential Scanning Calorimetry (TGA/DSC) was performed on a Netzsch STA 449F1 under a flow of N2-gas. The samples were heated from 30 to 800 °C in alumina or platinum crucibles, with a ramp rate of 2 or 5 °C min−1. The TGA/DSC results are displayed in Fig. S2 and S3 of the ESI.†
Single-crystal X-ray diffraction (S-XRD) data were recorded on a Bruker D8 Venture instrument fitted with a PHOTON CCD area-detector, and using monochromatic MoKα1 radiation (λ = 0.7093 Å) from a fine-focus sealed tube source. Data reduction was done using SAINT,15 and absorption correction by SADABS.15 The structures were solved by direct methods using SIR92,16 and refined using SHELX-2014/617 as implemented in the WinGX18 and OLEX219 program suites. Where necessary for the refinement of the structure, the SQUEEZE protocol of PLATON20 was used to remove residual electron density from the solvent accessible voids (SAV).
Variable temperature (VT) S-XRD was recorded on the Swiss-Norwegian Beamline (BM01A, SNBL) at the European Synchrotron Radiation Facility (ESRF) using monochromatic synchrotron radiation (λ = 0.69396 Å) and a Dectris Pilatus 2 M photon counting pixel area detector.21 Data reduction, absorption correction and structure solution was done using CrysAlis,22 and the structures were refined using SHELX-2014/617 as implemented in the WinGX18 and OLEX219 program suites. Hydrogen atoms were positioned geometrically at distances of 0.95 (CH) and 0.98 Å (CH3), and refined using a riding model with Uiso(H) = 1.2Ueq(CH) and Uiso(H) = 1.5Ueq(CH3).
Powder X-ray diffraction (P-XRD) data were recorded at ambient atmosphere and temperature on a Bruker D8-A25 instrument using monochromatic CuKα1 radiation (λ = 1.5406 Å) from a fine-focus sealed tube source and a LynxEye XE position sensitive detector operated in transmission geometry. Crystals of CPO-71-Cu and CPO-72-La were ground to a powder in a mortar and sealed in glass capillaries for measurement. A Pawley fit was performed on the recorded patterns using the TOPAS23 software with the unit cell parameters determined by S-XRD to confirm the absence of other crystalline phases in the samples (see Fig. S6 and S7 in the ESI†).
VT P-XRD was recorded on the SNBL at the ESRF using monochromatic synchrotron radiation (λ = 0.69396 Å). The experimental setup uses a Huber goniometer and Dectris Pilatus 2 M photon counting pixel area detector. The patterns were analyzed by parametric refinement24 using TOPAS to extract the unit cell parameters as a function of temperature. The patterns were visualized as 2D films using Powder3D25 (see Fig. S1 in the ESI†).
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Fig. 2 The six carboxylate to lanthanum coordination modes in CPO-72-La. The two bottom cartoons represent the two different edges that connect the nodes in the sql network. |
Name | CPO-71-Cu | CPO-72-La |
---|---|---|
Formula | C19H19NO7Cu | C54H64N2O27La2 |
Formula weight | 436.89 | 1450.89 |
T (K) | 105 (2) | 105 (2) |
Crystal system | Monoclinic | Triclinic |
Space group (#) | C2/c (15) |
P![]() |
Z | 8 | 2 |
a (Å) | 18.0477 (7) | 13.4844 (5) |
b (Å) | 10.3801 (4) | 14.1740 (6) |
c (Å) | 23.4227 (9) | 16.6448 (6) |
α (°) | 90 | 90.4630 (10) |
β (°) | 96.7430 (10) | 105.8700 (10) |
γ (°) | 90 | 99.8160 (10) |
V (Å3) | 4357.6 (3) | 2829.36 (19) |
D c (g cm−3) | 1.332 | 1.703 |
μ (mm−1) | 1.039 | 1.582 |
Reflections collected | 34![]() |
90![]() |
Reflections unique | 5023 | 14![]() |
Parameters | 257 | 837 |
Restraints | 0 | 55 |
R int | 0.0531 | 0.0348 |
Crystal size (mm3) | 0.26 × 0.14 × 0.14 | 0.75 × 0.30 × 0.22 |
Crystal color | Green | Pale brown |
Crystal shape | Needle | Needle |
F(000) | 1800 | 1464 |
Residual density max/min (e Å−3) | 0.594/−0.335 | 2.989/−1.316 |
GOF | 1.059 | 1.103 |
Final R indices [I > 2σ(I)] | R1 = 0.0405 | R1 = 0.0316 |
wR2 = 0.0792 | wR2 = 0.0683 | |
R indices (all data) | R1 = 0.0589 | R1 = 0.0425 |
wR2 = 0.0841 | wR2 = 0.0720 |
We recently reported two new series of CPs, CPO-68-M and CPO-69-M, that are based on the same linker as CPO-71-Cu and CPO-72-La.14 Although they are based on the same linker, CPO-68-M and CPO-69-M feature a completely different topology (sra). CPO-68-M and CPO-69-M are formed from 1D metal–carboxylate chain SBUs that are separated by linker molecules. This results in 3D structures differing significantly from the layered structures of CPO-71-Cu and CPO-72-La. The synthesis procedures of all four CPs have similarities with regards to synthesis solvent and temperature range. Thus, it is evident that other factors than these determine which SBU is more favourable in the different CPs.
CPO-71-Cu | |
---|---|
(i) −x + 0.5, y − 0.5, −z + 0.5; (ii) x, −y + 1, z + 0.5; (iii) −x + 0.5, −y + 0.5, −z + 1; (iv) phenyl–phenyl torsion; (v) phenyl–carboxylate torsion. | |
Cu1–O1i | 1.9655 (15) |
Cu1–O2ii | 1.9620 (15) |
Cu1–O4 | 1.9477 (15) |
Cu1–O5iii | 1.9639 (16) |
Cu1–O1C | 2.1430 (16) |
(C1–C6)–(C7–C12)iv | 35.85 (12) |
(C1–C6)–(O1–C13–O2)v | 40.09 (15) |
(C7–C12)–(O4–C15–O5)v | 31.92 (18) |
Indeed, the stability of the copper paddlewheel SBU provides a possible explanation as to why CPO-71-Cu is not iso-structural to either CPO-68-M or CPO-69-M. One can draw some parallels to the case of Cu2(dhtp),32 a late addition to the CPO-27/MOF-74 family of metal–organic frameworks.10,11 Like CPO-68-M and CPO-69-M, the structure of CPO-27/MOF-74 is based on 1D metal–carboxylate chains. Similarly, the structure also supports a range of divalent metal cations (e.g. Zn2+, Co2+, Ni2+, Mg2+, Fe2+ and Cu2+). However, divalent copper ions have a strong tendency to form the paddlewheel motif in the presence of carboxylates. Hence, the synthesis of the copper analogue of CPO-27/MOF-74 was only recently achieved through careful tuning of the synthesis conditions. Currently there is no reported copper analogue of CPO-68-M or CPO-69-M, but the possibility of synthesizing such a material should not be ruled out.
The structure of CPO-71-Cu includes solvent accessible interlayers. Although the crystallographic data set is of high quality and the coordinated DMF molecules can be refined with high precision, this is not the case for the solvent located in the interlayers. The interlayers contain a disordered mixture of the synthesis solvents DMF and H2O in the as synthesized compound. The electron density originating from the disordered solvent was removed from the structure using SQUEEZE before the final refinement. The calculation from PLATON gives a solvent accessible volume of 856 Å3 in the unit cell (19.6% of total volume) for the dataset collected at 105 K.
Contrary to CPO-71-Cu, the solvent in the interlayers of CPO-72-La is ordered, and one DMF molecule as well as four H2O molecules can be refined in the structure. The single-crystals of CPO-72-La also differ from CPO-71-Cu by being highly sensitive to solvent loss. Treatment in vacuum, thermal treatment or even just exposure to ambient conditions rapidly results in cracking of the single-crystals into smaller crystallites. Polycrystalline P-XRD samples are slightly more resilient, and P-XRD patterns of decent quality can be recorded up to 100 °C. Above this temperature however, the patterns rapidly deteriorate to the point that unit cell parameters can no longer be refined with satisfactory accuracy above 140 °C. This indicates that the solvent molecules in the interlayer stabilize the structure, and that the ordering of the solvent is likely due to interactions between the solvent and the framework. The O–O distances between oxygen atoms in the framework and the interlayer solvent range from 2.848 (3) Å to 2.887 (3) Å. This is consistent with hydrogen bonding interaction (see Table S3 in the ESI†). There also appears to be a hydrogen bonding network between the individual solvent molecules, with O–O distances ranging from 2.737 (4) Å to 2.886 (4) Å. This could be a contributing factor to the ordering. The TGA data indicates some degree of thermal stability until about 300 °C (see Fig. S2 in the ESI†). Unfortunately, the material lacks the long range order necessary for XRD analysis at this temperature, possibly due to turbostratic disorder.33
In the structure, there are a total of 18 La–O bonds, ranging from 2.419 (2) Å to 2.868 (2) Å. These bond lengths are in accordance with the expected values for La3+/O2− in a nine-coordinate environment when applying the bond valence method.34 Selected bond lengths are presented in Table 3, and the full list is available in the ESI (Table S2†). Note that the La–O(DMF) bond is slightly shorter than the La–O(H2O) bonds. Similar to CPO-71-Cu, there is some distortion of the linkers in CPO-72-La. This distortion is however less pronounced, and mainly limited to four of the six carboxylate groups as noted in Table 3. The two remaining carboxylate groups deviate less than 10 degrees from the benzene ring plane.
CPO-72-La | |
---|---|
(i) H2O; (ii) DMF; (iii) phenyl–carboxylate torsion. | |
La1–O3Ci | 2.504 (2) |
La1–O4Ci | 2.677 (2) |
La2–O1Cii | 2.481 (2) |
La2–O2Ci | 2.641 (3) |
(C1–C6)–(O1–C7–O2)iii | 59.77 (16) |
(C9–C14)–(O4–C15–O5)iii | 23.27 (26) |
(C17–C22)–(O7–C23–O8)iii | 62.23 (17) |
(C25–C30)–(O10–C31–O11)iii | 26.47 (27) |
In the synthesis procedure, the solvent mixture of DMF and H2O was pre-treated at 80 °C for 72 hours. This step is crucial in the synthesis procedure, although the exact reason and mechanism is currently unknown. What is known is that DMF hydrolyses in the presence of water at elevated temperatures, forming formic acid and dimethyl amine. There are reports in the literature where the in situ formed dimethylammonium and/or formate is incorporated in the resulting structure.35–37 Although no such incorporation is observed for CPO-72-La, it is possible that one or both of these hydrolysis products may have a form of templating effect on the structure during synthesis.38 Another possibility one could imagine is that the formic acid takes on the role as a modulator, regulating the crystal growth.39–41 However, the concentration of formic acid present during synthesis is much lower than common modulator concentrations (e.g. 5–30 mole equivalents).41,42 Further insight into the role of such in situ formed species in low concentration is needed.
Firstly, the changes in the b- and c-axis parameters are tightly linked, indicating a concerted movement within the layers of the structure upon heating. Secondly, the a-axis initially lengthens, before it starts to contract around 130 °C. Lastly, there are subtle changes to the β-angle throughout the experiment, but most pronounced from 130 °C. The changes in the β-angle seem linked to the changes in the a-axis. The sum of the cell parameter changes is plotted as cell volume as function of temperature (Fig. 5). These observations are interpreted as a thermal expansion followed by contraction of the framework due to solvent evaporation.
A change in the a-axis was expected since the layers of the structure are oriented parallel to the bc-plane. However, the changes in the b- and c-axis were more surprising, and are attributed to a slight reorientation of the linker molecules as the solvent evaporates. The sum of these changes is evident as shifts in certain reflections, and is particularly noticeable in reflections with a high h- and l-Miller index component (Fig. 6).
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Fig. 6 Excerpt of the VT measurement of CPO-71-Cu displayed as a 2D film, y-axis = scan number (increasing temperature), x-axis = reflection angle in degrees 2Θ (λ = 0.69396 Å). Selected temperatures and reflections are indicated in red. The full 2D film is available in the ESI.† |
To further elucidate on the structural changes, a VT S-XRD experiment was set up to collect full datasets of the crystal structure every 10 °C from 70 to 280 °C. The S-XRD results are consistent with the findings from the P-XRD analysis (see also Table S1 and Fig. S5 in the ESI†). On large scale there are only subtle changes in the main structure upon heating. Furthermore, the electron density in the interlayers that originates from the disordered solvent molecules remains fairly constant up to around 130 °C (Fig. 7). From 130 °C onwards, the electron density decreases steadily until the structure is fully evacuated at around 230 °C.
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Fig. 7 Electrons removed from the solvent accessible voids (SAV) in the unit cell by the SQUEEZE protocol of PLATON, plotted against temperature. |
Interestingly, the DMF molecule coordinated to the copper paddlewheel SBU remains in place even at 250 °C, demonstrating that this coordination is very stable. As indicated in Table 2, the Cu–O(DMF) bond length in the structure is 2.1430 (16) Å. This is comparable to Cu–O(H2O/DMF/DEF/MeOH) bonds lengths that are reported in the literature for coordination polymers based on the same copper paddlewheel SBU.9,43,44 In other words, the stability of the coordination can not simply be explained by an unusually short or strong bond. By comparison, the coordinated H2O solvent molecules found in the SBU of the Cu(BTC) MOF (HKUST-1) are very labile. The Cu–O(H2O) bond length is here 2.165 (8) Å, thus only marginally longer than in CPO-71-Cu. Yet the coordinated solvent can easily be removed by heating the MOF to 100 °C in air.9 It is thus likely that other structural factors than the Cu–O(DMF) bond length dictates the stability of this bond.
Once the structure is fully evacuated at 230 to 250 °C, the S-XRD patterns deteriorate rapidly, indicating that the structure only supports partial solvent removal. Additional experiments on ex situ activated samples support this hypothesis. Samples of CPO-71-Cu were activated at 130 and 160 °C under dynamic vacuum, as well as one sample activated at 180 °C under atmospheric conditions. By applying the SQUEEZE protocol to the S-XRD data collected on these samples, we could determine residual electron density comparable to the in situ S-XRD data (169, 80 and 30 electrons per unit cell for the three respective datasets). Note that the crystal quality was slightly diminished in the sample activated at 180 °C when compared to the samples activated at 130 and 160 °C. Solvent exchange does not seem to aid the activation process. A sample exchanged with methanol for 48 hours became visually opaque and non-diffracting in X-rays (see also Fig. S8 in the ESI†). From these experiments it seems that partial activation of CPO-71-Cu is possible. However some residual solvent, probably DMF, is necessary to provide a form of cohesion between the layers in the structure.
Footnote |
† Electronic supplementary information (ESI) available: 2D representation of the VT experiment of CPO-71-Ca, TGA/DSC, unit cell parameters from the VT P-XRD and S-XRD experiments performed on CPO-71-Cu, P-XRD of the structures and the full table of La–O bond lengths for CPO-72-La. CCDC 1483001 and 1483002. For ESI and crystallographic data in CIF or other electronic format see DOI: 10.1039/c6dt02195f |
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