Giuseppina Chianesea,
Bin-Bin Gub,
Fan Yangb,
Wei-Hua Jiaob,
Yue-Wei Guoc,
Hou-Wen Lin*b and
Orazio Taglialatela-Scafati*a
aDipartimento, di Farmacia, Università di Napoli Federico II, Via D. Montesano 49, 80131 Napoli, Italy. E-mail: scatagli@unina.it
bKey Laboratory for Marine Drugs, Department of Pharmacy, State Key Laboratory of Oncogenes and Related Genes, Renji Hospital, School of Medicine, Shanghai 200127, China
cState Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Zu Chong Zhi Road 555, Shanghai 201203, China
First published on 16th July 2015
A new polyketide-based metabolite, spiroplakortone (1), characterized as an unprecedented γ-spiroketal-γ-lactone, was obtained from the Chinese sponge Plakortis simplex. Structural characterization of spiroplakortone (1) was based on extensive spectroscopic analysis and its configuration was partly established by GIAO 13C-NMR, supported by DP4 probability analysis, and ECD calculations. A plausible pathway for the biosynthesis of spiroplakortone (1), envisaging the formation of a carbon–carbon linkage between polyketide and aminoacid (leucine)-derived moieties, has been proposed.
Our research groups have long been involved in the investigation of Plakortis metabolites, leading to the discovery of new classes of polyketides, e.g. plakortethers8 and simplextones.9 In addition, we have disclosed the antimalarial potential of plakortin,10 for which we have postulated a likely mechanism of action,11 basing on the information coming from natural12 and synthetically prepared analogues.13
In the course of our continuing joint analysis of a Chinese specimen of Plakortis simplex, aimed at characterizing its antimalarial endoperoxides,14 we have obtained a new polyketide-based metabolite, which we named spiroplakortone (1), featuring a spiroketal lactone group (Fig. 1). Herein we describe isolation, stereostructural characterization and possible biogenesis of this new compound.
Spiroplakortone (1) was isolated as an optically active amorphous solid with the molecular formula C22H36O3 (deduced by HR-ESIMS), suggesting the presence of five unsaturation degrees. The IR absorption at νmax 1763 cm−1 was in agreement with the presence of a γ-lactone moiety. Inspection of the 1H NMR spectrum (C6D6, Table 1) aided by the 2D HSQC NMR revealed the presence of six methyl groups (three doublets and three triplets), seven sp3 methylenes, two sp3 methines and two sp2 methines (δH 5.35 and 6.20, both singlets), the latter likely belonging to a conjugated double bond. Additionally, the 13C NMR spectrum of 1 (Table 1) included resonances of five unprotonated carbon atoms, namely a lactone carbonyl (δC 171.0), two additional sp2 carbons (δC 137.0 and 139.5), an oxygenated sp3 carbon (δC 94.5), and a deshielded sp3 carbon resonating at δC 116.5. The 2D COSY spectrum of 1 was instrumental to arrange the proton multiplets within four spin systems (in bold in Fig. 2): the methyl-branched chain going from H2-8 to H3-13, two not further coupled ethyl groups and an isobutyl group.
| Position | δH, mult, J in Hz | δC, mult, J in Hz |
|---|---|---|
| a 1H NMR: 700 MHz; 13C NMR: 175 MHz. | ||
| 1 | 171.0, C | |
| 2 | 137.0, C | |
| 3 | 6.20, s | 144.1, CH |
| 4 | 116.5, C | |
| 5 | 139.5, C | |
| 6 | 5.35, s | 132.5, CH |
| 7 | 94.5, C | |
| 8 | 1.64, overlapped | 46.4, CH2 |
| 1.50, m | ||
| 9 | 1.38, m | 28.4, CH |
| 10 | 1.33, m | 37.9, CH2 |
| 1.07, m | ||
| 11 | 1.20, overlapped | 29.0, CH2 |
| 12 | 1.24, overlapped | 22.9, CH2 |
| 13 | 0.87, t, 7.3 | 14.0, CH3 |
| 14 | 0.93, d, 6.8 | 21.7, CH3 |
| 15 | 1.64, overlapped | 32.2, CH2 |
| 1.55, overlapped | ||
| 16 | 0.90, t, 7.2 | 8.5, CH3 |
| 17 | 1.74, m | 18.5, CH2 |
| 1.58, overlapped | ||
| 18 | 0.82, t, 7.3 | 11.7, CH3 |
| 19 | 2.01, dd, 12.5, 6.5 | 33.9, CH2 |
| 1.93, dd, 12.5, 6.9 | ||
| 20 | 1.76, m | 26.7, CH |
| 21 | 0.71, d, 6.7 | 21.7, CH3 |
| 22 | 0.71, d, 6.7 | 21.7, CH3 |
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| Fig. 2 COSY (boldened line) and key HMBC (colored arrows) detected for spiroplakortone (1). On the right structure, the arrow indicates the ROESY cross-peak between H3-16 and H-3. | ||
Accurate inspection of the HMBC spectrum revealed that the above four saturated chains must be attached at different positions of a bicyclic spiroketal lactone core. The network of HMBC correlations represented as red arrows in Fig. 2 were instrumental to define the structure of this highly substituted bicyclic system. H-6 showed HMBC correlations with C-7, C-5 and C-4, while H-3 correlated with C-4, C-5, C-1, and C-2. Among these, the H-3/C-5 HMBC cross-peak supported the hypothesis that C-4 (δC 116.5) is a ketal carbon joining two ring systems, a dihydrofuran and a lactone ring, thus completing the unsaturation degrees implied by the molecular formula. The four saturated side chains could be linked at this spiroketal lactone core on the basis of key HMBC correlations, represented as blue arrows in Fig. 2. Thus, both H3-16 and H2-8 showed HMBC cross-peaks with the oxygenated C-7; H3-18 showed cross-peak with C-5; the isobutyl methylene protons (H2-19) showed cross-peaks with the sp2 unprotonated C-2, with C-3 and with the lactone carbonyl C-1. These correlations completed the assignment of the planar structure of spiroplakortone (1) as depicted.
The structure of spiroplakortone (1) includes three stereogenic centers, namely the unprotonated carbons C-4 and C-7 and the non-functionalized side chain methine C-9. The ROESY spectrum of 1 revealed the presence of a weak cross-peak between H3-16 and H-3 (Fig. 2), as the single diagnostic correlation. We decided to support this stereochemical indication by using a computational approach, through the comparison between experimental and quantum-mechanically calculated 13C NMR chemical shifts.15 To this aim, compounds showing the two possible relative orientations around the dihydrofuran ring were subjected to the initial Merck Molecular Force Field (MMFF) conformational analysis. Since the conformational arrangements of the alkyl side-chains, especially the long side chain attached at C-7, are likely to have negligible impact on the calculated 13C NMR chemical shifts, our calculations were simplified by restricting the torsions around the alkyl side-chains during the conformational search. In this way, the originally resultant conformers (2615 for 4R*7R* and 2259 for 4R*7S*) were reduced to a single conformer for each of the two epimers (Fig. 3). These conformers were re-optimized at the B3LYP/6-31G(d) level in vacuo and at the B3LYP/6-31G(d,p) level with polarizable continuum model (PCM) solvent model for benzene, which, to balance the computational accuracy and computing time, were then used in the GIAO NMR shielding constants calculations at the same level.
The computationally calculated 13C NMR data of the bicyclic core of the two diastereomers (see Tables S2 and S3 of ESI†) were compared to the experimental data for 1. The two diastereomers gave relatively similar values, however, on the basis of values of CMADs (4R*7R* 1.3 vs. 4R*7S* 1.1) and deviations for outliers (4R*7R* 2.4 vs. 4R*7S* 1.9), the diastereomer 4R*7S* was found to display better overall agreement with the experimental data. The DP4 probability analyses,16,17 using t distribution and DP4-database 2, also identified this diastereomer as the more likely, with a probability of 67.5% (the remaining 32.5% probability was assigned to the diastereomer 4R*7R*). Since we only evaluated the 13C NMR chemical shifts of the bicyclic core of compound 1 for comparison, this value can be considered acceptable. Thus, on the basis of the concurrence of experimental (ROESY) and computational evidences, we confidently assigned the 4R*7S* relative configuration to 1.
To upgrade this relative configuration to the absolute one, the optimized geometry of the 4R*7S* stereoisomer at the B3LYP/6-31G(d) level with PCM solvent model for CH3OH was used to perform time-dependent DFT (TDDFT) calculation. With all four functionals (B3LYP, CAM-B3LYP, BH&HLYP, PBE0) combined with TZVP basis set, the ECD spectrum was calculated (in CH3OH) and compared with the experimental one (Fig. 4).18 This powerful and reliable computational approach is becoming increasingly important in the assignment of the absolute configuration of natural products.19 The ECD spectrum calculated for (4R,7S)-1 showed the same sign and almost the same magnitude of the CEs for 222 nm and 237 nm transitions. Thus, on the basis of this comparison, the 4R,7S absolute configuration was confidently assigned to compound 1.
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| Fig. 4 Experimental ECD spectrum of compound 1 (in CH3OH) compared with PBE0/TZVP spectrum calculated in CH3OH (PCM model) for 4R,7S-1 and its enantiomer. | ||
Unfortunately, due to the free-rotating nature of the C-7/C-8 single bond, it was not possible to establish any correlation between the configuration at C-7 and that at C-9. As expected, both experimental (ROESY, 1H/1H and 1H/13C coupling constants) and computational (calculation of 13C or 1H NMR chemical shifts of the side chain resonances) data were not helpful in this task. Although not experimentally demonstrated, we would propose to assign the 9S configuration to 1 on the basis of biogenetic considerations. Indeed, all the Plakortis polyketides isolated to date, including the polyketide endoperoxides previously obtained by us from the same organism,14 have invariably shown a S configuration at the methyl- or ethyl-branched carbons of the “western” side chain.
The unprecedented spiroketal lactone skeleton of spiroplakortone (1) could biosynthetically result from a mixed biogenesis envisaging the formation of a carbon–carbon linkage between polyketide and aminoacid-derived moieties, as outlined in Scheme 1. A plausible polyketide precursor could be the β-ketoacid 2 (the likely ketide units are boldened), strictly related to the postulated precursor of another class of Plakortis metabolites, the furanylidene derivatives gracilioethers.20 Compound 2 would undergo aldolic addition by α-ketoisocaproate (3), deriving from transamination of leucine and, after decarboxylation of the obtained product, a double cyclization could directly afford the target compound 1.
Spiroplakortone (1) was evaluated for cytotoxicity against L5178Y (mouse lymphoma) cell line using the MTT assay21 and it exhibited a moderate activity (IC50 = 37.5 μM).
:
1 were further fractionated by HPLC (n-hexane/EtOAc 95
:
5, flow 0.7 mL min−1) and R-HPLC (MeOH/H2O 8
:
2) affording compounds 1 (1.3 mg) in the pure state.
ε): 228 (0.39), 245 (0.26) nm; ECD (CH3CN, c = 1.00 × 10−3) Δε (nm) −0.42 (222), +0.80 (237), +0.27 (266), +0.23 (283); 1H and 13C NMR data in C6D6: Table 1; ESIMS m/z 371.2 [M + Na]+; 1H NMR assignment of 1 in CDCl3 (700 MHz) δH 6.55 (1H, bs, H-3), 5.79 (1H, bs, H-6), 2.21 (1H, dd, J = 14.4, 6.8 Hz, H-19a), 2.17 (1H, dd, J = 14.4, 6.8 Hz, H-19b), 1.96 (1H, dd, overlapped, H-17a), 1.84 (1H, dd, J = 16.8, 9.7 Hz, H-17b), 1.93 (1H, m, H-20), 1.68 (2H, m, H-15), 1.60 (1H, m, H-8a), 1.51 (1H, m, H-8b), 1.27 (1H, m, H-10a), 1.25 (2H, m, H-12), 1.24 (2H, m, H-11), 1.09 (3H, t, J = 7.2 Hz), 0.93 (3H, d, overlapped, H-21), 0.93 (3H, d, overlapped, H-22), 0.93 (3H, d, overlapped, H-14), 0.90 (3H, t, J = 7.1 Hz, H-16), 0.87 (3H, t, J = 7.0 Hz, H-13)). 13C NMR assignment of 1 in CDCl3 (125 MHz): δC 171.9 (C-1), 144.5 (C-3), 138.9 (C-5), 136.7 (C-2), 133.0 (C-6), 116.7 (C-4), 95.2 (C-7), 44.9 (C-8), 37.8 (C-10), 34.0 (C-19), 32.5 (C-15), 29.1 (C-11), 28.0 (C-9), 26.8 (C-20), 22.9 (C-12), 22.1 (C-21; C-22), 22.1 (C-14), 18.3 (C-17), 14.0 (C-13), 12.1 (C-18), 8.60 (C-16). HRESIMS m/z 371.2569 ([M + Na]+, calcd for C22H36O3Na 371.2562).
Computed chemical shifts were scaled empirically25 according to the equation δscaledx = (δcalcx − intercept)/slope where δcalcx is the calculated chemical shift x (in ppm) relative to tetramethylsilane (TMS), which is calculated at the same level of theory, and slope and intercept are the slope and intercept resulting from a regression calculation on a plot of δcalc against δexp.
Footnote |
| † Electronic supplementary information (ESI) available: Copies of 1D and 2D NMR spectra, tables and figures relative to computational calculations. See DOI: 10.1039/c5ra09840h |
| This journal is © The Royal Society of Chemistry 2015 |